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chore: release 5.6.0 (#3599)
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🤖 I have created a release \*beep\* \*boop\*
---
##
[5.6.0](https://www.github.com/snakemake/snakemake-wrappers/compare/v5.5.2...v5.6.0)
(2025-02-03)


### Features

* add expected output checking to `test_wrapper.py` `run()` function
(fix: ensembl-reference wrapper download >1 chromosome)
([#3432](https://www.github.com/snakemake/snakemake-wrappers/issues/3432))
([53cfae1](https://www.github.com/snakemake/snakemake-wrappers/commit/53cfae1c9d95b03bab1c25c735cf84b7880b3d75))
* Add support for seqkit split2
([#3575](https://www.github.com/snakemake/snakemake-wrappers/issues/3575))
([7250679](https://www.github.com/snakemake/snakemake-wrappers/commit/7250679edd405a0f7c46e8704779d556aa870a78))
* allow snakemake object access in datavzrd config template
([#3598](https://www.github.com/snakemake/snakemake-wrappers/issues/3598))
([0018aa9](https://www.github.com/snakemake/snakemake-wrappers/commit/0018aa91eda0f99f5dd97ae51a5cdbe8b39b5b32))
* Deeptools bampefragmentsize
([#3596](https://www.github.com/snakemake/snakemake-wrappers/issues/3596))
([6e90858](https://www.github.com/snakemake/snakemake-wrappers/commit/6e90858b6410d0087f37615b9d87d138a71a9067))
* Varscan2 - SnpEff Meta wrapper
([#3501](https://www.github.com/snakemake/snakemake-wrappers/issues/3501))
([71a8434](https://www.github.com/snakemake/snakemake-wrappers/commit/71a84347e308bec660373a01f61340ec193daa4e))


### Performance Improvements

* autobump bio/deeptools/alignmentsieve
([#3604](https://www.github.com/snakemake/snakemake-wrappers/issues/3604))
([37e698b](https://www.github.com/snakemake/snakemake-wrappers/commit/37e698bd9b6484bcb64cbdc3b0f922a05e8e2344))
* autobump bio/deeptools/bamcoverage
([#3605](https://www.github.com/snakemake/snakemake-wrappers/issues/3605))
([6ae4984](https://www.github.com/snakemake/snakemake-wrappers/commit/6ae4984fc9881797fea6ca0961664502e89704d1))
* autobump bio/deeptools/bampefragmentsize
([#3620](https://www.github.com/snakemake/snakemake-wrappers/issues/3620))
([1aec315](https://www.github.com/snakemake/snakemake-wrappers/commit/1aec3157799e63491d531afbcfe62e10cac6d2b6))
* autobump bio/deeptools/computematrix
([#3610](https://www.github.com/snakemake/snakemake-wrappers/issues/3610))
([e65b8b7](https://www.github.com/snakemake/snakemake-wrappers/commit/e65b8b79a621d82681071fe2563eff5f581f4bef))
* autobump bio/deeptools/multibigwigsummary
([#3601](https://www.github.com/snakemake/snakemake-wrappers/issues/3601))
([92db3d9](https://www.github.com/snakemake/snakemake-wrappers/commit/92db3d9dbba12040847b39dc541a92432ada11b5))
* autobump bio/deeptools/plotcorrelation
([#3603](https://www.github.com/snakemake/snakemake-wrappers/issues/3603))
([d88799d](https://www.github.com/snakemake/snakemake-wrappers/commit/d88799d7f5a7e60d1969509f7f8c036657d5a1b4))
* autobump bio/deeptools/plotcoverage
([#3608](https://www.github.com/snakemake/snakemake-wrappers/issues/3608))
([71d12f8](https://www.github.com/snakemake/snakemake-wrappers/commit/71d12f8716023c18393e3a7b6b88c530de8d5e83))
* autobump bio/deeptools/plotfingerprint
([#3606](https://www.github.com/snakemake/snakemake-wrappers/issues/3606))
([d4338f7](https://www.github.com/snakemake/snakemake-wrappers/commit/d4338f743557687b6f4092088284f2a994aa59e6))
* autobump bio/deeptools/plotheatmap
([#3609](https://www.github.com/snakemake/snakemake-wrappers/issues/3609))
([37193fa](https://www.github.com/snakemake/snakemake-wrappers/commit/37193fa225a95712fb0dd59f614f3ffd8294c4c4))
* autobump bio/deeptools/plotpca
([#3607](https://www.github.com/snakemake/snakemake-wrappers/issues/3607))
([8f55536](https://www.github.com/snakemake/snakemake-wrappers/commit/8f555366312cd3c8c4733ff6112e3e5456ba14b1))
* autobump bio/deeptools/plotprofile
([#3602](https://www.github.com/snakemake/snakemake-wrappers/issues/3602))
([f8a73d7](https://www.github.com/snakemake/snakemake-wrappers/commit/f8a73d7e11b7e209a5336f8a68bcb2c3a57fcb3e))
* autobump bio/diamond/blastp
([#3621](https://www.github.com/snakemake/snakemake-wrappers/issues/3621))
([1ead3d4](https://www.github.com/snakemake/snakemake-wrappers/commit/1ead3d41dfa2369c35c735b612d84abc6c634858))
* autobump bio/diamond/blastx
([#3623](https://www.github.com/snakemake/snakemake-wrappers/issues/3623))
([0defe92](https://www.github.com/snakemake/snakemake-wrappers/commit/0defe92e18e51290700e0b0a8df1281e8a3dbd2c))
* autobump bio/diamond/makedb
([#3622](https://www.github.com/snakemake/snakemake-wrappers/issues/3622))
([6875eec](https://www.github.com/snakemake/snakemake-wrappers/commit/6875eec8185387253e66839311c13d175fc18670))
* autobump bio/emu/abundance
([#3611](https://www.github.com/snakemake/snakemake-wrappers/issues/3611))
([05184ad](https://www.github.com/snakemake/snakemake-wrappers/commit/05184ad3470baa2d2a8ea10544d458c78dffeaa3))
* autobump bio/emu/collapse-taxonomy
([#3613](https://www.github.com/snakemake/snakemake-wrappers/issues/3613))
([6da07c9](https://www.github.com/snakemake/snakemake-wrappers/commit/6da07c9034ad28df0f570c65734379ccbc00e901))
* autobump bio/emu/combine-outputs
([#3612](https://www.github.com/snakemake/snakemake-wrappers/issues/3612))
([8e3ac2b](https://www.github.com/snakemake/snakemake-wrappers/commit/8e3ac2b0b1b8b526fccabe37ff724a92ccb33399))
* autobump bio/multiqc
([#3614](https://www.github.com/snakemake/snakemake-wrappers/issues/3614))
([b4cfe2c](https://www.github.com/snakemake/snakemake-wrappers/commit/b4cfe2c127f9e01f3b01575ece27b56326767a0f))
* autobump bio/ngsbits/sampleancestry
([#3626](https://www.github.com/snakemake/snakemake-wrappers/issues/3626))
([759dc33](https://www.github.com/snakemake/snakemake-wrappers/commit/759dc33d227d6baaddf5840a5e9f7013f288d035))
* autobump bio/ngsbits/samplesimilarity
([#3625](https://www.github.com/snakemake/snakemake-wrappers/issues/3625))
([d7318e1](https://www.github.com/snakemake/snakemake-wrappers/commit/d7318e1b5c78e34f46649479434dfc91f6381844))
* autobump bio/varlociraptor/estimate-alignment-properties
([#3546](https://www.github.com/snakemake/snakemake-wrappers/issues/3546))
([2686e34](https://www.github.com/snakemake/snakemake-wrappers/commit/2686e34f86a5ae30735c22d2666caad8bf936d7a))
* autobump bio/vg/autoindex
([#3634](https://www.github.com/snakemake/snakemake-wrappers/issues/3634))
([a8f6d51](https://www.github.com/snakemake/snakemake-wrappers/commit/a8f6d51ffff69ce5c9bda9a0dfd23f4b1f818f1f))
* autobump bio/vg/construct
([#3629](https://www.github.com/snakemake/snakemake-wrappers/issues/3629))
([b138000](https://www.github.com/snakemake/snakemake-wrappers/commit/b138000abd2de1f3ee24ee448754cf19062a44cf))
* autobump bio/vg/giraffe
([#3630](https://www.github.com/snakemake/snakemake-wrappers/issues/3630))
([6755303](https://www.github.com/snakemake/snakemake-wrappers/commit/6755303f123d90e5e8a6e39fa47b370142aedc88))
* autobump bio/vg/ids
([#3628](https://www.github.com/snakemake/snakemake-wrappers/issues/3628))
([db777b6](https://www.github.com/snakemake/snakemake-wrappers/commit/db777b62beb35516f70a5b39ed266606162b2226))
* autobump bio/vg/kmers
([#3632](https://www.github.com/snakemake/snakemake-wrappers/issues/3632))
([8f82f23](https://www.github.com/snakemake/snakemake-wrappers/commit/8f82f2352777cea43b2ffbb1f74f42ed405921cc))
* autobump bio/vg/merge
([#3633](https://www.github.com/snakemake/snakemake-wrappers/issues/3633))
([a775573](https://www.github.com/snakemake/snakemake-wrappers/commit/a775573a539e366f553a281b362b47a43c6fcc6f))
* autobump bio/vg/prune
([#3627](https://www.github.com/snakemake/snakemake-wrappers/issues/3627))
([c8b6faf](https://www.github.com/snakemake/snakemake-wrappers/commit/c8b6faf319ba01e0570489effb92d570cac0d47d))
* autobump bio/vg/sim
([#3631](https://www.github.com/snakemake/snakemake-wrappers/issues/3631))
([463448a](https://www.github.com/snakemake/snakemake-wrappers/commit/463448afa402e6d74970e662cb62eb4afb4bbd65))
* autobump bio/whatshap/haplotag
([#3616](https://www.github.com/snakemake/snakemake-wrappers/issues/3616))
([33d5b76](https://www.github.com/snakemake/snakemake-wrappers/commit/33d5b7669a38be02839a8c9c2f9533bd5cca4e4d))
* autobump utils/datavzrd
([#3600](https://www.github.com/snakemake/snakemake-wrappers/issues/3600))
([3fa9fb5](https://www.github.com/snakemake/snakemake-wrappers/commit/3fa9fb5bb4245653156319eba26f8efb8b309e95))
* autobump utils/datavzrd
([#3619](https://www.github.com/snakemake/snakemake-wrappers/issues/3619))
([27f227f](https://www.github.com/snakemake/snakemake-wrappers/commit/27f227fcdf0cbce02ab581d913f4755c419fb989))
* update datavzrd to v2.48.0
([#3618](https://www.github.com/snakemake/snakemake-wrappers/issues/3618))
([04e2a56](https://www.github.com/snakemake/snakemake-wrappers/commit/04e2a56b5bf98648ec349e50e822830491a81df9))
---


This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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# Changelog

## [5.6.0](https://www.github.com/snakemake/snakemake-wrappers/compare/v5.5.2...v5.6.0) (2025-02-03)


### Features

* add expected output checking to `test_wrapper.py` `run()` function (fix: ensembl-reference wrapper download >1 chromosome) ([#3432](https://www.github.com/snakemake/snakemake-wrappers/issues/3432)) ([53cfae1](https://www.github.com/snakemake/snakemake-wrappers/commit/53cfae1c9d95b03bab1c25c735cf84b7880b3d75))
* Add support for seqkit split2 ([#3575](https://www.github.com/snakemake/snakemake-wrappers/issues/3575)) ([7250679](https://www.github.com/snakemake/snakemake-wrappers/commit/7250679edd405a0f7c46e8704779d556aa870a78))
* allow snakemake object access in datavzrd config template ([#3598](https://www.github.com/snakemake/snakemake-wrappers/issues/3598)) ([0018aa9](https://www.github.com/snakemake/snakemake-wrappers/commit/0018aa91eda0f99f5dd97ae51a5cdbe8b39b5b32))
* Deeptools bampefragmentsize ([#3596](https://www.github.com/snakemake/snakemake-wrappers/issues/3596)) ([6e90858](https://www.github.com/snakemake/snakemake-wrappers/commit/6e90858b6410d0087f37615b9d87d138a71a9067))
* Varscan2 - SnpEff Meta wrapper ([#3501](https://www.github.com/snakemake/snakemake-wrappers/issues/3501)) ([71a8434](https://www.github.com/snakemake/snakemake-wrappers/commit/71a84347e308bec660373a01f61340ec193daa4e))


### Performance Improvements

* autobump bio/deeptools/alignmentsieve ([#3604](https://www.github.com/snakemake/snakemake-wrappers/issues/3604)) ([37e698b](https://www.github.com/snakemake/snakemake-wrappers/commit/37e698bd9b6484bcb64cbdc3b0f922a05e8e2344))
* autobump bio/deeptools/bamcoverage ([#3605](https://www.github.com/snakemake/snakemake-wrappers/issues/3605)) ([6ae4984](https://www.github.com/snakemake/snakemake-wrappers/commit/6ae4984fc9881797fea6ca0961664502e89704d1))
* autobump bio/deeptools/bampefragmentsize ([#3620](https://www.github.com/snakemake/snakemake-wrappers/issues/3620)) ([1aec315](https://www.github.com/snakemake/snakemake-wrappers/commit/1aec3157799e63491d531afbcfe62e10cac6d2b6))
* autobump bio/deeptools/computematrix ([#3610](https://www.github.com/snakemake/snakemake-wrappers/issues/3610)) ([e65b8b7](https://www.github.com/snakemake/snakemake-wrappers/commit/e65b8b79a621d82681071fe2563eff5f581f4bef))
* autobump bio/deeptools/multibigwigsummary ([#3601](https://www.github.com/snakemake/snakemake-wrappers/issues/3601)) ([92db3d9](https://www.github.com/snakemake/snakemake-wrappers/commit/92db3d9dbba12040847b39dc541a92432ada11b5))
* autobump bio/deeptools/plotcorrelation ([#3603](https://www.github.com/snakemake/snakemake-wrappers/issues/3603)) ([d88799d](https://www.github.com/snakemake/snakemake-wrappers/commit/d88799d7f5a7e60d1969509f7f8c036657d5a1b4))
* autobump bio/deeptools/plotcoverage ([#3608](https://www.github.com/snakemake/snakemake-wrappers/issues/3608)) ([71d12f8](https://www.github.com/snakemake/snakemake-wrappers/commit/71d12f8716023c18393e3a7b6b88c530de8d5e83))
* autobump bio/deeptools/plotfingerprint ([#3606](https://www.github.com/snakemake/snakemake-wrappers/issues/3606)) ([d4338f7](https://www.github.com/snakemake/snakemake-wrappers/commit/d4338f743557687b6f4092088284f2a994aa59e6))
* autobump bio/deeptools/plotheatmap ([#3609](https://www.github.com/snakemake/snakemake-wrappers/issues/3609)) ([37193fa](https://www.github.com/snakemake/snakemake-wrappers/commit/37193fa225a95712fb0dd59f614f3ffd8294c4c4))
* autobump bio/deeptools/plotpca ([#3607](https://www.github.com/snakemake/snakemake-wrappers/issues/3607)) ([8f55536](https://www.github.com/snakemake/snakemake-wrappers/commit/8f555366312cd3c8c4733ff6112e3e5456ba14b1))
* autobump bio/deeptools/plotprofile ([#3602](https://www.github.com/snakemake/snakemake-wrappers/issues/3602)) ([f8a73d7](https://www.github.com/snakemake/snakemake-wrappers/commit/f8a73d7e11b7e209a5336f8a68bcb2c3a57fcb3e))
* autobump bio/diamond/blastp ([#3621](https://www.github.com/snakemake/snakemake-wrappers/issues/3621)) ([1ead3d4](https://www.github.com/snakemake/snakemake-wrappers/commit/1ead3d41dfa2369c35c735b612d84abc6c634858))
* autobump bio/diamond/blastx ([#3623](https://www.github.com/snakemake/snakemake-wrappers/issues/3623)) ([0defe92](https://www.github.com/snakemake/snakemake-wrappers/commit/0defe92e18e51290700e0b0a8df1281e8a3dbd2c))
* autobump bio/diamond/makedb ([#3622](https://www.github.com/snakemake/snakemake-wrappers/issues/3622)) ([6875eec](https://www.github.com/snakemake/snakemake-wrappers/commit/6875eec8185387253e66839311c13d175fc18670))
* autobump bio/emu/abundance ([#3611](https://www.github.com/snakemake/snakemake-wrappers/issues/3611)) ([05184ad](https://www.github.com/snakemake/snakemake-wrappers/commit/05184ad3470baa2d2a8ea10544d458c78dffeaa3))
* autobump bio/emu/collapse-taxonomy ([#3613](https://www.github.com/snakemake/snakemake-wrappers/issues/3613)) ([6da07c9](https://www.github.com/snakemake/snakemake-wrappers/commit/6da07c9034ad28df0f570c65734379ccbc00e901))
* autobump bio/emu/combine-outputs ([#3612](https://www.github.com/snakemake/snakemake-wrappers/issues/3612)) ([8e3ac2b](https://www.github.com/snakemake/snakemake-wrappers/commit/8e3ac2b0b1b8b526fccabe37ff724a92ccb33399))
* autobump bio/multiqc ([#3614](https://www.github.com/snakemake/snakemake-wrappers/issues/3614)) ([b4cfe2c](https://www.github.com/snakemake/snakemake-wrappers/commit/b4cfe2c127f9e01f3b01575ece27b56326767a0f))
* autobump bio/ngsbits/sampleancestry ([#3626](https://www.github.com/snakemake/snakemake-wrappers/issues/3626)) ([759dc33](https://www.github.com/snakemake/snakemake-wrappers/commit/759dc33d227d6baaddf5840a5e9f7013f288d035))
* autobump bio/ngsbits/samplesimilarity ([#3625](https://www.github.com/snakemake/snakemake-wrappers/issues/3625)) ([d7318e1](https://www.github.com/snakemake/snakemake-wrappers/commit/d7318e1b5c78e34f46649479434dfc91f6381844))
* autobump bio/varlociraptor/estimate-alignment-properties ([#3546](https://www.github.com/snakemake/snakemake-wrappers/issues/3546)) ([2686e34](https://www.github.com/snakemake/snakemake-wrappers/commit/2686e34f86a5ae30735c22d2666caad8bf936d7a))
* autobump bio/vg/autoindex ([#3634](https://www.github.com/snakemake/snakemake-wrappers/issues/3634)) ([a8f6d51](https://www.github.com/snakemake/snakemake-wrappers/commit/a8f6d51ffff69ce5c9bda9a0dfd23f4b1f818f1f))
* autobump bio/vg/construct ([#3629](https://www.github.com/snakemake/snakemake-wrappers/issues/3629)) ([b138000](https://www.github.com/snakemake/snakemake-wrappers/commit/b138000abd2de1f3ee24ee448754cf19062a44cf))
* autobump bio/vg/giraffe ([#3630](https://www.github.com/snakemake/snakemake-wrappers/issues/3630)) ([6755303](https://www.github.com/snakemake/snakemake-wrappers/commit/6755303f123d90e5e8a6e39fa47b370142aedc88))
* autobump bio/vg/ids ([#3628](https://www.github.com/snakemake/snakemake-wrappers/issues/3628)) ([db777b6](https://www.github.com/snakemake/snakemake-wrappers/commit/db777b62beb35516f70a5b39ed266606162b2226))
* autobump bio/vg/kmers ([#3632](https://www.github.com/snakemake/snakemake-wrappers/issues/3632)) ([8f82f23](https://www.github.com/snakemake/snakemake-wrappers/commit/8f82f2352777cea43b2ffbb1f74f42ed405921cc))
* autobump bio/vg/merge ([#3633](https://www.github.com/snakemake/snakemake-wrappers/issues/3633)) ([a775573](https://www.github.com/snakemake/snakemake-wrappers/commit/a775573a539e366f553a281b362b47a43c6fcc6f))
* autobump bio/vg/prune ([#3627](https://www.github.com/snakemake/snakemake-wrappers/issues/3627)) ([c8b6faf](https://www.github.com/snakemake/snakemake-wrappers/commit/c8b6faf319ba01e0570489effb92d570cac0d47d))
* autobump bio/vg/sim ([#3631](https://www.github.com/snakemake/snakemake-wrappers/issues/3631)) ([463448a](https://www.github.com/snakemake/snakemake-wrappers/commit/463448afa402e6d74970e662cb62eb4afb4bbd65))
* autobump bio/whatshap/haplotag ([#3616](https://www.github.com/snakemake/snakemake-wrappers/issues/3616)) ([33d5b76](https://www.github.com/snakemake/snakemake-wrappers/commit/33d5b7669a38be02839a8c9c2f9533bd5cca4e4d))
* autobump utils/datavzrd ([#3600](https://www.github.com/snakemake/snakemake-wrappers/issues/3600)) ([3fa9fb5](https://www.github.com/snakemake/snakemake-wrappers/commit/3fa9fb5bb4245653156319eba26f8efb8b309e95))
* autobump utils/datavzrd ([#3619](https://www.github.com/snakemake/snakemake-wrappers/issues/3619)) ([27f227f](https://www.github.com/snakemake/snakemake-wrappers/commit/27f227fcdf0cbce02ab581d913f4755c419fb989))
* update datavzrd to v2.48.0 ([#3618](https://www.github.com/snakemake/snakemake-wrappers/issues/3618)) ([04e2a56](https://www.github.com/snakemake/snakemake-wrappers/commit/04e2a56b5bf98648ec349e50e822830491a81df9))

### [5.5.2](https://www.github.com/snakemake/snakemake-wrappers/compare/v5.5.1...v5.5.2) (2025-01-17)


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