v5.4.0
Features
- NGS-bits SampleAncestry (#3502) (8600d44)
- NGS-bits SampleSimilarity (#3500) (710597c)
- NGSCheckMate make pattern (#3499) (3b96cc1)
- Sex.DetERRmine (#3497) (3919f2e)
Performance Improvements
- autobump bio/bbtools (#3507) (19d027d)
- autobump bio/busco (#3506) (aad4b56)
- autobump bio/busco (#3519) (6af2e11)
- autobump bio/encode_fastq_downloader (#3521) (cbf06d2)
- autobump bio/freebayes (#3509) (12b8b3c)
- autobump bio/gatk3/baserecalibrator (#3523) (7a7518e)
- autobump bio/gatk3/indelrealigner (#3525) (a0d913c)
- autobump bio/gatk3/printreads (#3524) (67af9a6)
- autobump bio/gatk3/realignertargetcreator (#3522) (5f8ffe7)
- autobump bio/hifiasm (#3510) (2b1b9f2)
- autobump bio/mapdamage2 (#3526) (92da252)
- autobump bio/mosdepth (#3511) (762b273)
- autobump bio/mtnucratio (#3512) (7f6a3b0)
- autobump bio/ngsbits/sampleancestry (#3527) (2abf38c)
- autobump bio/ngsbits/samplesimilarity (#3529) (c91ce10)
- autobump bio/ngscheckmate/makesnvpattern (#3528) (ff9a81d)
- autobump bio/reference/ensembl-mysql-table (#3513) (6b5c545)
- autobump bio/sexdeterrmine (#3514) (2b18309)
- autobump bio/spades/metaspades (#3530) (070b9b6)
- autobump bio/varlociraptor/call-variants (#3533) (8c563f1)
- autobump bio/varlociraptor/control-fdr (#3532) (ce7d1b0)
- autobump bio/varlociraptor/estimate-alignment-properties (#3531) (0b5ac04)
- autobump bio/varlociraptor/preprocess-variants (#3534) (56a8933)
- autobump bio/vep/annotate (#3515) (2609900)
- autobump bio/vep/cache (#3516) (f46427c)
- autobump bio/vep/plugins (#3535) (9a6ccc3)
- autobump bio/vg/giraffe (#3517) (6fffdd6)
- autobump utils/csvtk (#3508) (41e8545)
- autobump utils/csvtk (#3520) (d4a52e5)