v3.13.6

Performance Improvements

• Update datavzrd wrapper (#3060) (567937f)

v3.13.5

Bug Fixes

• change from wget -o (log file output) to -O (proper output file output) (#3059) (a0e5045)

Performance Improvements

• autobump bio/gatk3/indelrealigner (#3053) (8fbdbd9)
• autobump bio/gatk3/printreads (#3054) (aa8a27e)
• autobump bio/nonpareil/plot (#3056) (51d97f1)
• autobump bio/reference/ensembl-regulation (#3057) (ef0caea)
• autobump bio/sourmash/compute (#3058) (aa1774f)

v3.13.4

Performance Improvements

• autobump bio/picard/markduplicates (#3047) (b4151f3)

v3.13.3

Performance Improvements

• autobump bio/bwa-mem2/mem (#3031) (2cb9dab)
• autobump bio/bwa-meme/mem (#3030) (7524d54)
• autobump bio/bwa-memx/mem (#3029) (044cf27)
• autobump bio/bwa/mem (#3027) (956e3f9)
• autobump bio/bwa/sampe (#3026) (2778a04)
• autobump bio/bwa/samse (#3032) (23cffcc)
• autobump bio/bwa/samxe (#3028) (ee202a3)
• autobump bio/multiqc (#3033) (9dc0597)
• autobump bio/nonpareil/plot (#3034) (de0b564)
• autobump bio/picard/addorreplacereadgroups (#3044) (40b2d75)
• autobump bio/picard/bedtointervallist (#3036) (34ea112)
• autobump bio/picard/collectalignmentsummarymetrics (#3040) (66a9770)
• autobump bio/picard/collectgcbiasmetrics (#3050) (df821c3)
• autobump bio/picard/collecthsmetrics (#3037) (1b8f4ea)
• autobump bio/picard/collectinsertsizemetrics (#3041) (f233cd2)
• autobump bio/picard/collectmultiplemetrics (#3049) (d255dab)
• autobump bio/picard/collectrnaseqmetrics (#3046) (6e0e22a)
• autobump bio/picard/collecttargetedpcrmetrics (#3043) (999464e)
• autobump bio/picard/createsequencedictionary (#3039) (4256664)
• autobump bio/picard/mergesamfiles (#3048) (701f770)
• autobump bio/picard/mergevcfs (#3038) (409b0d5)
• autobump bio/picard/revertsam (#3042) (dae3c3b)
• autobump bio/picard/samtofastq (#3051) (a71479f)
• autobump bio/picard/sortsam (#3045) (f8e554a)
• change version scrapping (#3022) (72e6ce9)

v3.13.2

Performance Improvements

• Update datavzrd wrapper (#3023) (a4da462)

v3.13.1

Bug Fixes

• remove unnecessary import (#3020) (504dfbb)

Performance Improvements

• autobump bio/vep/cache (#3015) (d10065d)
• Update Datavvzrd wrapper (#3021) (4330cb8)

v3.13.0

Features

• add new ensembl-regulation wrapper to systematically download Ensembl regulatory_features (#3017) (a81ced2)

v3.12.2

Performance Improvements

• autobump bio/cutadapt/pe (#3006) (6b6d07d)
• autobump bio/cutadapt/se (#3005) (4d771f5)
• autobump bio/encode_fastq_downloader (#3007) (af40616)
• autobump bio/last/lastal (#2992) (3514346)
• autobump bio/last/lastal (#3008) (85607f8)
• autobump bio/last/lastdb (#2993) (7841808)
• autobump bio/last/lastdb (#3009) (4cee18d)
• autobump bio/mapdamage2 (#2995) (fea552c)
• autobump bio/mapdamage2 (#3010) (b2bcd56)
• autobump bio/ngsderive (#2996) (e5bfa94)
• autobump bio/open-cravat/module (#3012) (2fe1756)
• autobump bio/open-cravat/run (#3011) (0bbef93)
• autobump bio/pbmm2/align (#2998) (b50e222)
• autobump bio/pbmm2/index (#2997) (fb96fe5)
• autobump bio/picard/collectinsertsizemetrics (#3013) (f93af0b)
• autobump bio/sourmash/compute (#2999) (12d87ec)
• autobump bio/spades/metaspades (#3014) (e005b6e)
• autobump bio/vep/plugins (#3016) (9861c57)
• Update Datavzrd wrapper (#3002) (8d76d60)

v3.12.1

Performance Improvements

• Update Datavzrd wrapper (#2989) (9ef3b31)
• Update Datavzrd wrapper (#2991) (387369c)

v3.12.0

Features

• Support lists in param.region, and fix typo (#2978) (1e9e511)

Performance Improvements

• autobump bio/entrez/efetch (#2980) (c3d76eb)
• autobump bio/kallisto/quant (#2247) (11dd11e)
• autobump bio/multiqc (#2981) (bf34418)
• autobump bio/ngs-disambiguate (#2982) (8cdb584)
• autobump bio/open-cravat/module (#2983) (7942f61)
• autobump bio/open-cravat/run (#2984) (099d86a)
• autobump bio/spades/metaspades (#2986) (6286c02)