Dogs DBs

[mr-eyes]

10-23-2024

{
    "species_dbs": {
        "Dog": [
            {
                "scientific_name": "canis lupus familiaris",
                "tax_id": 9615,
                "genomes": {
                    "canfam31_k51_s10k": {
                        "url": "https://osf.io/97qyk/download",
                        "species": "9615",
                        "genomes": "generic",
                        "amplicons": "generic",
                        "scale": 10000,
                        "ksize": 51,
                        "file_md5sum": "e179f3e9361ba46f956ff2241ac13c04",
                        "accession": "GCF_000002285.3"
                    }
                },
                "amplicons": {
                    "canfam31_exome_k51_s10k": {
                        "url": "https://osf.io/vxg89/download",
                        "genomes": "canfam31_k51_s10k",
                        "scale": 10000,
                        "ksize": 51,
                        "accession": "GCF_000002285.3",
                        "file_md5sum": "ee1dedb4c20ecce38b482c7839529b20",
                        "description": "extracted exon coordinates from GFF, map to chrs positions by sequence report, then used the BED to write sequences."
                    }
                },
                "rna": {
                    "canfam31_rna_k51_s10k": {
                        "url": "https://osf.io/d5q8n/download",
                        "genomes": "canfam31_k51_s10k;",
                        "amplicons": "extracted_exome_k51_s10k;",
                        "scale": 10000,
                        "ksize": 51,
                        "accession": "",
                        "file_md5sum": "c5e087c4280d13deb9e02c80eb494966",
                        "description": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/285/GCF_000002285.3_CanFam3.1/GCF_000002285.3_CanFam3.1_rna.fna.gz"
                    }
                },
                "chry": {
                    "dogs_ychr_v1_k51_s10k": {
                        "url": "https://osf.io/wrsmk/download",
                        "species": "95616;",
                        "genomes": "generic",
                        "amplicons": "generic",
                        "scale": 10000,
                        "ksize": 51,
                        "file_md5sum": "a92922713881dd75346c15f99ebe973e",
                        "accession": "AF032441.1;AF107021.1;AF192268.1;AF221611.1;AY466397.1;AY466398.1;AY466399.1;CM016470.1;CM025139.1;CM061961.1;CM062040.1;DQ973626.1;DQ973627.1;DQ973628.1;DQ973629.1;DQ973630.1;DQ973631.1;DQ973632.1;DQ973633.1;DQ973634.1;DQ973635.1;DQ973636.1;DQ973637.1;DQ973638.1;DQ973639.1;DQ973640.1;DQ973641.1;DQ973642.1;DQ973643.1;DQ973644.1;DQ973645.1;DQ973646.1;DQ973647.1;DQ973648.1;DQ973649.1;DQ973650.1;DQ973651.1;DQ973652.1;DQ973653.1;DQ973654.1;DQ973655.1;DQ973656.1;DQ973657.1;DQ973658.1;DQ973659.1;DQ973660.1;DQ973661.1;DQ973662.1;DQ973663.1;DQ973664.1;DQ973665.1;DQ973666.1;DQ973667.1;DQ973668.1;DQ973669.1;DQ973670.1;DQ973671.1;DQ973672.1;DQ973673.1;DQ973674.1;DQ973675.1;DQ973676.1;DQ973677.1;DQ973678.1;DQ973679.1;DQ973680.1;DQ973681.1;DQ973682.1;DQ973683.1;DQ973684.1;DQ973685.1;DQ973686.1;DQ973687.1;DQ973688.1;DQ973689.1;DQ973690.1;DQ973691.1;DQ973692.1;DQ973693.1;DQ973694.1;DQ973695.1;DQ973696.1;DQ973697.1;DQ973698.1;DQ973699.1;DQ973700.1;DQ973701.1;DQ973702.1;DQ973703.1;DQ973704.1;DQ973705.1;DQ973706.1;DQ973707.1;DQ973708.1;DQ973709.1;DQ973710.1;DQ973711.1;DQ973712.1;DQ973713.1;DQ973714.1;DQ973715.1;DQ973716.1;DQ973717.1;DQ973718.1;DQ973719.1;DQ973720.1;DQ973721.1;DQ973722.1;DQ973723.1;DQ973724.1;DQ973725.1;DQ973726.1;DQ973727.1;DQ973728.1;DQ973729.1;DQ973730.1;DQ973731.1;DQ973732.1;DQ973733.1;DQ973734.1;DQ973735.1;DQ973736.1;DQ973737.1;DQ973738.1;DQ973739.1;DQ973740.1;DQ973741.1;DQ973742.1;DQ973743.1;DQ973744.1;DQ973745.1;DQ973746.1;DQ973747.1;DQ973748.1;DQ973749.1;DQ973750.1;DQ973751.1;DQ973752.1;DQ973753.1;DQ973754.1;DQ973755.1;DQ973756.1;DQ973757.1;DQ973758.1;DQ973759.1;DQ973760.1;DQ973761.1;DQ973762.1;DQ973763.1;DQ973764.1;DQ973765.1;DQ973766.1;DQ973767.1;DQ973768.1;DQ973769.1;DQ973770.1;DQ973771.1;DQ973772.1;DQ973773.1;DQ973774.1;DQ973775.1;DQ973776.1;DQ973777.1;DQ973778.1;DQ973779.1;DQ973780.1;DQ973781.1;DQ973782.1;DQ973783.1;DQ973784.1;DQ973785.1;DQ973786.1;DQ973787.1;DQ973788.1;DQ973789.1;DQ973790.1;DQ973791.1;DQ973792.1;DQ973793.1;DQ973794.1;DQ973795.1;DQ973796.1;DQ973797.1;DQ973798.1;DQ973799.1;DQ973800.1;DQ973801.1;DQ973802.1;DQ973803.1;DQ973804.1;DQ973805.1;GQ366706.1;GQ366707.1;GQ366708.1;GQ366709.1;GQ366710.1;GQ366711.1;GQ366712.1;GQ366713.1;GQ366714.1;GQ366715.1;GQ366716.1;GQ366717.1;GQ366718.1;GQ366719.1;GQ366720.1;GQ366721.1;GQ366722.1;GQ366723.1;GQ366724.1;GQ366725.1;GQ366726.1;GQ366727.1;GQ366728.1;GQ366729.1;GQ366730.1;GQ366731.1;GQ366741.1;GQ366742.1;GQ366743.1;GQ366744.1;GQ366745.1;GQ366746.1;GQ366747.1;GQ366748.1;GQ366749.1;GQ366750.1;GQ366751.1;GQ366752.1;GQ366753.1;GQ366754.1;GQ366755.1;GQ366756.1;GQ366757.1;GQ366758.1;GQ366759.1;GQ366760.1;GQ366761.1;GQ366762.1;GQ366763.1;GQ366764.1;GQ366765.1;GQ366766.1;GQ366767.1;GQ366768.1;GQ366769.1;GQ366770.1;GQ366790.1;GQ366791.1;GQ366792.1;GQ366793.1;HQ389365.1;HQ389367.1;HQ389368.1;HQ389369.1;HQ389370.1;HQ389372.1;HQ389373.1;HQ389375.1;HQ389376.1;HQ389377.1;HQ389378.1;HQ389379.1;HQ389380.1;HQ389381.1;HQ389384.1;HQ389385.1;HQ389386.1;HQ389387.1;HQ389390.1;HQ389391.1;HQ389393.1;HQ389394.1;HQ389395.1;HQ389397.1;HQ389398.1;HQ389399.1;HQ389401.1;HQ389402.1;HQ389403.1;HQ389404.1;HQ389405.1;HQ389407.1;HQ389408.1;HQ389409.1;HQ389410.1;HQ389411.1;HQ389412.1;HQ389413.1;HQ389414.1;HQ389416.1;HQ389417.1;HQ389418.1;HQ389419.1;HQ389420.1;HQ389421.1;HQ389423.1;HQ389424.1;HQ389425.1;HQ389426.1;HQ389427.1;HQ389428.1;HQ389430.1;HQ389432.1;HQ389433.1;HQ389434.1;JQ723489.1;JQ723490.1;KF021271.1;KP081776.1;KX065054.1;LQAT00000000.1;NC_051844.1;NW_024010442.1;NW_024010443.1;NW_024010444.1;U15160.1",
                        "description": "SRA nucleotide database with query `(\"Canis lupus familiaris\"[Primary Organism] AND \"chromosome Y\"[All Fields] AND biomol_genomic[PROP]) AND (\"0001/01/01\"[MDAT] : \"2024/10/14\"[MDAT])`"
                    }
                },
                "pangenome": {},
                "misc": {}
            }
        ]
    },

    "generic_dbs": {
        "gtdb_220_s10k_k51": {
            "url": "https://osf.io/7fgj5/download",
            "species": "generic",
            "genomes": "generic",
            "amplicons": "generic",
            "file_md5sum": "3691678e6cf079b7bab97edd553f097b",
            "scale": 10000,
            "ksize": 51
        }
    }
}