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Ontology featurization should support OMOP only #212

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EthanSteinberg opened this issue Apr 22, 2024 · 0 comments

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EthanSteinberg commented Apr 22, 2024

Right now FEMR supports ontology expansion in both tabular and neural network featurization (https://github.com/som-shahlab/femr/blob/main/src/femr/featurizers/featurizers.py#L178 for tabular featurization and "hierarchical" for neural network featurization).

It would be useful to enforce additional variants here in some fashion.

In particular, we want to enforce a strict vocabulary here (OMOP only ideally).

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