CHANGES.rst

2.1.1 (2024-09-26)

New Features

• Add function to jwst.Level1bModel which fills moving target tables with missing columns (#329)

2.1.0 (2024-09-17)

Bug Fixes

• Fix invalid abvegaoffset and coords schemas. (#327)

Documentation

• use towncrier to handle change log entries (#326)

New Features

• Add mt_v2 and mt_v3 keywords to moving_target schema (#263)
• Added MEDIUMDEEP2 and MEDIUMDEEP8 to allowed readout patterns in JWST core schema, READPATT, and PREADPATT. (#315)
• add grating keyword to dark and superbias schemas (#317)
• Update JWST datamodel irs2 datatype to provide numpy>=2.0 compatibility. (#319)
• Add datamodel and schema for PastasossModel, a new reference file type for JWST NIRISS SOSS exposures. (#320)
• Add keyword to JWST core schema to track status of new step clean_flicker_noise. (#328)

Deprecations and Removals

• replace usages of copy_arrays with memmap (#306)
• remove uses of now unused ignore_version_mismatch (#313)
• Remove deprecated R_DRIZPAR keyword from core schema as well as jwst.datamodels.DrizParsModel. (#316)

2.0.0 (2024-06-24)

• Remove deprecated jwst.datamodels models: DataModel, DrizProductModel, MIRIRampModel, MultiProductModel [#171]
• Increase CRDS minimum version to 11.17.1 [#171]
• Removed deprecated deprecate_class, cast_arrays and jwst.datamodels.util [#298]
• Remove stdatamodels.jwst.datamodels.schema which is an out-of-date duplicate of stdatamodels.schema [#175]
• Remove unnecessary references to overwritten datamodel attributes to free up memory [#301]
• Remove unused deprecated_properties [#303]

1.10.1 (2024-03-25)

• Added ALL_MRS to allowed values for keyword MRSPRCHN in core schema. [#285]
• Provide existing AsdfFile instance to validate to speed up assignment validation check_value. [#276]
• Deprecate deprecate_class unused by downstream. [#274]
• Add cache to hdu accesses during _load_from_schema to speed up file opening. [#278]
• Remove TEXPTIME keyword from the JWST core datamodel schema because it duplicates the information of XPOSURE. [#277]
• Deprecate check_memory_allocation. This function did not work as intended. [#273]
• Decrease size of SPECTYP and TARGET columns in OI_TARGET table of oifits schema to 16 characters. [#281]
• Change integration_number from int16 to int32 in group schema. [#283]
• Fix datamodel schema ids for abvegaoffset, keyword_lampmode, nrsfs_apcorr [#258]
• Drop support for python 3.9 [#287]
• Convert FITS_rec instances read from old files where a hdu was linked in the old schema (but is no longer linked) when rewriting files. [#268]
• Deprecate skip_fits_update and environment variable SKIP_FITS_UPDATE. Future behavior will be as if skip_fits_update was False and the FITS headers will always be read [#270]
• Increase minimum required asdf version [#288]
• Add S_BPXSLF keyword to the JWST core schema to reflect the addition of the badpix_selfcal step. [#305]

1.10.0 (2024-02-29)

Bug Fixes

• Adding "IMAGER" as another allowed value for the "MRSPRCHN" keyword, in order to support proper handling of MIRI MRS and Imager exposures done in parallel. [#259]
• Fix mask schema to allow for non-integer ngroups selectors [#256]

Changes to API

• Add NRMModel for new NIRISS NRM reference file [#253]

Other

• Add grating keyword to JWST barshadow ref file schema to match parkeys on crds [#260]
• Add average_dark_current in both scalar keyword and array extension options to DarkModel and MIRIDarkModel. Add the array extension to the RampModel, for tracking the average dark current. [#265]
• Add EXTRXSTR, EXTRXSTP, EXTRYSTR, and EXTRYSTP keywords to the jwst MultiSpec schema. [#264]

1.9.1 (2024-01-25)

Bug Fixes

Changes to API

• Remove json_id argument use for callbacks passed to asdf.treeutil.walk_and_modify [#244]

Other

• Add ngroups keyword to JWST mask ref file schema to match parkeys on crds [#249]
• Added keywords noutputs and bunit to the JWST readnoise and superbias datamodel schemas. [#250]
• Updated JWST core datamodel schema to include the new TMEASURE keyword for measurement time. [#248]

1.9.0 (2023-12-11)

Bug Fixes

• Fix search in documentation [#241]

Changes to API

• Deprecate cast_arrays argument to from_fits_hdu and cast_fits_arrays argument to Datamodel.__init__ [#214]
• Use DataModel.__init__ memmap argument when opening ASDF files [#232]

Other

• Updated JWST core datamodel schema to include the new step status keyword "S_NSCLEN" for the new "nsclean" calibration step. [#237]
• Adding emicorr datamodel and schema, as well as corresponding completion and reference file keywords [#200]

1.8.4 (2023-12-04)

Bug Fixes

• Fixed ValidationError during AmiOIModel.update [#234]
• Fix rebuild_fits_rec_dtype handling of unsigned integer columns with shapes [#213]
• Fix unit roundtripping when writing to a datamodel with a table to a FITS file [#242]

Changes to API

• Sort keyword files used for schema_editor to make output non-arbitrary copy schema before merging to avoid schema modification [#227]

Other

• Add mrsptcorr ref_file to core.schema [#228]
• Avoid unnecessary validation during DataModel.clone [#230]
• Replace uses of utcnow (deprecated in python 3.12) [#231]
• Updated JWST MIRI imager photom model to include time-dependent correction coeffs. [#235]

1.8.3 (2023-10-02)

Other

• Add channel keyword to MIRI MRS Apcorr schema [#224]

1.8.2 (2023-09-26)

Other

• Update RefractionIndexFromPrism converting single element ndarrays to scalar values before use to avoid ``DeprecationWarning``s introduced in numpy 1.25 [#210]
• Add band to GainModel schema to account for miri crds file updates [#219]

1.8.1 (2023-09-13)

Bug Fixes

Changes to API

Other

• Add AmiLgFitModel class and schema [#199]
• Switch schema refs from tags to equivalent uris [#201]
• Add DITH_RA and DITH_DEC to JWST core schema metadata, to be used in spectral extraction window centering. [#203]
• Change format of the MirMrsPtCorrModel to use a 1d reference table instead of 2d FITS image extensions [#196]
• Convert FITS_rec instances to arrays before serializing or validating with asdf [#205]

1.8.0 (2023-08-24)

Other

• Remove ignored V23ToSkyConverter from jwst.transforms version 1.0.0 asdf extension [#184]
• Use ValidationError and type validator from asdf instead of from jsonschema directly, remove jsonschema as a direct dependency, increase asdf minimum version to 2.15.0. [#177]
• Use binary masks for DQ calculations in dynamicdq [#185]
• Add keyword_filter.schema reference to gain schema to accomodate addition of FILTER as a CRDS selector for GAIN ref files. [#197]
• Add charge_migration (new name for undersampling_correction) with keyword S_CHGMIG to cal_step section of core schema. Change UNDERSAMP DQ flag to CHARGELOSS. [#194]
• Add option to allow_extra_columns in datamodel schema that defines structured arrays (tables) and allow extra columns in tables [#189]
• Fix typo in outlierifuoutput schema for kernel_ysize [#191]

1.7.2 (2023-08-14)

• Added the new keyword "GSC_VER" to the JWST core datamodels schema. [#190]

1.7.1 (2023-07-11)

Other

• Added two new header keywords to the JWST core schema target section: TARGCAT and TARGDESC, which record the target category and description as given by the user in the APT. [#179]
• Enable searching docs directory for doctests and fix failing doctest. [#182]
• Add error column to NIRSpec flat schema's flat_table definition, and remove fixed shape definition for other table columns. [#183]

Bug Fixes

• Link FITS_rec instances to created HDU on save to avoid data duplication. [#178]

1.7.0 (2023-06-29)

Other

• Update the allocation of the ZEROFRAME array for the RampModel. [#176]
• Added two new header keywords to the JWST core schema exposure section: PRIMECRS and EXTNCRS, which are used to record the rate of primary cosmic rays and extended cosmic rays (Snowballs and Showers). [#173]
• Add OIFITS compatible schema and AmiOIModel [#174]

1.6.0 (2023-06-15)

Other

• Update jwst outlierpars schema to support new IFU outlier detection algorithm and add new OutlierIFUOutputModel data model. [#164]
• Reduce interpolation vector length in NIRCam backwards transform to improve computation times [#165]
• Update of JWST/MIRI MRS photom datamodel to include the time dependent correction. [#166]
• Add a parameter to jwst outlierpars schema to support a second level of flagging outliers for JWST MIRI/MRS and NIRSpec IFU data. [#167]
• Close for opened files [#169]

1.5.0 (2023-05-16)

Other

• Provide second-order polynomial transforms for NIRCam WFSS grisms. [#124]
• Deprecate stdatamodels.jwst.datamodels.DataModel in favor of stdatamodels.jwst.datamodels.JwstDataModel. [#160]
• Provide backwards compatibility for grism transform schemas; remove inverse models from required properties of transform schemas. [#161]
• Add wavelength tables for NIRSpec Drizzle cubepars reference file model. [#162]

1.4.0 (2023-04-19)

Other

• Add pixel replacement step keyword to jwst.datamodels core schema, and change DQ bit 28 from UNRELIABLE_RESET to FLUX_ESTIMATED. [#149]
• drop support for Python 3.8 [#143]
• use Mamba to build docs [#155]
• Remove the defunct s3_utils module, so that stpipe no longer needs to depend on this package. This also removes the aws install option as this is no longer need. [#154]
• Remove use of deprecated pytest-openfiles pytest plugin. This has been replaced by catching ``ResourceWarning``s. [#152]
• Fix open file handles, which were previously ignored by pytest-openfiles, but which raise blocked ResourceWarning errors. [#153]

1.3.1 (2023-03-31)

Other

• Add units to BARTDELT and HELIDELT jwst keywords in datamodels schema. [#147]

1.3.0 (2023-03-13)

Other

• Added inverse functionality to dynamic_mask, which allows for properly saving of datamodels with dq_def defined. [#132]
• Move the dqflags and related code from stcal to this package so that the stcal dependency can be dropped. [#134]
• increase requires-python to 3.8 [#144]
• Add R_MRSXAR as the keyword for the jwst straylight mrsxartcorr reference filename in core schema in stdatamodels.jwst.datamodels [#145]

Bug Fixes

• Add support for reading from already open HDUList to asdf_in_fits.open [#136]

1.2.0 (2023-03-02)

Other

• Add UNDERSAMP flag to dqflags and undersample correction metadata to core schema in stdatamodels.jwst.datamodels [#127]

1.1.0 (2023-02-16)

Other

• Add helper functions to aid in migration of ASDF-in-FITS uses from asdf to this package [#114]

1.0.0 (2023-02-14)

Bug Fixes

Other

• Reimplement support for ASDF-in-FITS in this package. [#110]
• Move jwst.datamodels from the jwst package into this package. [#112]
• Move jwst.transforms from the jwst package into this package. [#113]

0.4.5 (2023-01-12)

Bug Fixes

• improve datamodels memory usage [#109]

Other

• added environments in tox.ini to support Tox 4 [#108]

0.4.4 (2022-12-27)

Bug Fixes

• Increase asdf version to >=2.14.1 to fix hdu data duplication [#105]
• Remove use of deprecated override__dir__ [#103]
• Add requirement of asdf-astropy >= 0.3.0 to prevent future issues with using deprecated astropy serialization methods [#104]

0.4.3 (2022-06-03)

• Pin astropy min version to 5.0.4. [#94]

0.4.2 (2022-03-15)

• Fix FITS writing validators with jsonschema 4.x. [#92]

0.4.1 (2022-03-07)

• Changed the way NDArrayType wrappers are handled on write. [#89]
• Bugfix for JWST failing with latest asdf-transform-schemas. [#90]

0.4.0 (2021-11-18)

• Add schema feature to forward deprecated model attributes to a new location. [#86]
• Support casting of FITS_rec tables with unsigned integer columns. [#87]

0.3.0 (2021-09-03)

• Remove NDData interface from DataModel. [#77]
• Add cast_fits_arrays and validate_arrays options for controlling array validation behavior. [#79]
• Prevent data corruption by raising an error when asked to cast a table with a pseudo-unsigned integer column. [#82]
• Remove DataModel.my_attribute function. [#72]

0.2.4 (2021-08-26)

• Workaround for setuptools_scm issues with recent versions of pip. [#83]

0.2.3 (2021-06-15)

• Don't allow ASDF hdus to get passed through extra_fits, and don't write out any ASDF extension if self._no_asdf_extension=True [#71]

0.2.2 (2021-06-09)

• Make arrays contiguous on save to prevent issue with duplicate array data between ASDF and FITS. [#70]

0.2.1 (2021-03-08)

• Stop setting level of package loggers. [#64]

0.2.0 (2021-02-15)

• Remove automatic management of meta.date attribute and create on_init hook. [#44]
• Fix bug where asdf.tags.core.NDArrayType instances remain in flat dict when include_arrays=False. [#58]
• Improve handling of open files among shallow copies of a DataModel. [#59, #60]

0.1.0 (2020-12-04)

• Create package and import code from jwst.datamodels. [#1, #27]
• Remove stdatamodels.open. [#2]
• Fix validation behavior when an object with nested None values is assigned to a DataModel attribute. [#45]
• Rename is_builtin_fits_keyword to make clear that it is used outside of this package. [#47]
• Add flag to disable validation on DataModel attribute assignment. [#36]