From 9ade09ff2e690646a01ab29d2a28007b4ef44bf5 Mon Sep 17 00:00:00 2001 From: Joshua Newton Date: Thu, 28 Nov 2024 13:09:05 -0500 Subject: [PATCH] `batch_single_subject.sh`: `t2_seg.nii.gz` -> `t2_rootlets.nii.gz` Co-authored-by: Jan Valosek <39456460+valosekj@users.noreply.github.com> --- single_subject/batch_single_subject.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/single_subject/batch_single_subject.sh b/single_subject/batch_single_subject.sh index ff5314a..370caad 100755 --- a/single_subject/batch_single_subject.sh +++ b/single_subject/batch_single_subject.sh @@ -438,7 +438,7 @@ cd ../t2 # Segment the spinal nerve rootlets sct_deepseg -i t2.nii.gz -task seg_spinal_rootlets_t2w -qc ~/qc_singleSubj # Check results using FSLeyes -fsleyes t2.nii.gz -cm greyscale t2_seg.nii.gz -cm subcortical -a 70.0 & +fsleyes t2.nii.gz -cm greyscale t2_rootlets.nii.gz -cm subcortical -a 70.0 & # Canal segmentation sct_deepseg -i t2.nii.gz -task canal_t2w -qc ~/qc_singleSubj