fails to build in stackage

[alaendle]

 Building library for sequenceTools-1.5.3.1..
       Preprocessing executable 'vcf2eigenstrat' for sequenceTools-1.5.3.1..
       Building executable 'vcf2eigenstrat' for sequenceTools-1.5.3.1..
       [1 of 1] Compiling Main [SequenceFormats.FreqSum package changed]

       /home/curators/work/unpack-dir/unpacked/sequenceTools-1.5.3.1-54e9f0959a741bf603bcc485603f256e26a21f561f025ac7d572cd6a858bcc84/src-executables/vcf2eigenstrat.hs:65:75: error: [GHC-83865]
           • Couldn't match expected type: Pipes.Internal.Proxy
                                             ()
                                             (EigenstratSnpEntry, SequenceFormats.Eigenstrat.GenoLine)
                                             ()
                                             Pipes.Internal.X
                                             (Pipes.Safe.SafeT IO)
                                             ()
                         with actual type: Producer
                                             (EigenstratSnpEntry, SequenceFormats.Eigenstrat.GenoLine)
                                             m0
                                             ()
                                           -> m0 ()
           • Probable cause: ‘writeEigenstrat’ is applied to too few arguments
             In the second argument of ‘(>->)’, namely
               ‘writeEigenstrat genoOut snpOut indOut indEntries’
             In the second argument of ‘($)’, namely
               ‘vcfProducer >-> P.map (freqSumToEigenstrat False)
                  >-> writeEigenstrat genoOut snpOut indOut indEntries’
             In a stmt of a 'do' block:
               runEffect
                 $ vcfProducer >-> P.map (freqSumToEigenstrat False)
                     >-> writeEigenstrat genoOut snpOut indOut indEntries
          |
       65 |         runEffect $ vcfProducer >-> P.map (freqSumToEigenstrat False) >-> writeEigenstrat genoOut snpOut indOut indEntries
          |                                                                           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

[alaendle]

Similar to #32. Will disable sequenceTools in stackage until a fix is released.

[stschiff]

Ah OK, thanks for letting me know. This is because I pushed an update to another library sequence-formats which introduced a breaking change to the API. I recently rolled that back and so will have to push another update to that other library. Once that's done, this one should compile again. Will let you know.

[stschiff]

OK, sequence-formats has been updated on hackage. If I understand stackage correctly, it should now try and compile this with the newest dependent library, so it should compile. Can you try @alaendle?

[alaendle]

Thanks - created a PR to re-enable the package.
commercialhaskell/stackage#7577