AddMotifs ERROR: Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'xvcopy': some ranges are out of bounds #1815
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bug
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HI!, I used a forged Axolotl BSgenome to perform AddMotifs operation, but the error displayed is as shown above. Additionally, I attempted to construct the BSgenome package by retaining only chromosome level data, but the error still persists. I don't know where the problem lies, I hope to get your help. Thank you very much!
This is my code:
pfm = getMatrixSet(JASPAR2022, opts = list(tax_group = "vertebrates", all_versions = F))
integ_animal <- qread("/home/QYH/_lyxfile/00project/01regeneration/02signac测试/01qs/05integ_animal_clusters.qs")
integ_macs_animal <- qread("/home/QYH/_lyxfile/00project/01regeneration/02signac测试/01qs/06integ_macs_animal_clusters.qs")
DefaultAssay(integ_animal) = "ATAC"
integ_animal
add motif information
integ_animal = AddMotifs(object = integ_animal, pfm = pfm, assay = "ATAC", all_versions = T,
![image](https://private-user-images.githubusercontent.com/60056237/385751621-73d54e6a-1ed4-4388-a32b-7bf499adce19.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.A-o6vxsi-i3aO1-t-2RthaO5Z8QSJt7aew3NxcehJWE)
genome = BSgenome.Amexicanum.NCBI.allchr.ambMex60DD)
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