The Taverna course spans three days of training, with each day starting with introductions, review or demonstrations, followed by lab exercises which students will go through at their own pace.
If the slides and materials was not included with this agenda, see https://github.com/taverna/taverna-tutorials/
10:00 - 10:15 Welcome to the workshop; agenda and how to do exercises
10:15 - 11:00 Introduction to web services, workflows and e-science approaches 0-Introduction_to_eScience.pdf
11:00 - 11:30 Coffee
11:30 - 12:00 Demonstration
- A Practical Introduction to Taverna Workflows] [slides+demo]
1-Introduction_to_Taverna.pdf - Finding and using services from BioCatalogue [demo]
- Sharing your workflows in myExperiment [demo]
12:00 - 13:00 Taverna Exercises
- Installing Taverna - Taverna Workbench Bioinformatics edition from http://www.taverna.org.uk/download
T-01-Installing_Taverna.pdf - Building a simple workflow
T-02-Simple_workflow.pdf - REST services from BioCatalogue
T-03-REST_biocatalogue.pdf
13:00 - 14:00 Lunch
14:00 - 16:00 Taverna Exercises (continued)
- Shims and Beanshells
T-04-Shims_and_Beanshell.pdf - Spreadsheet import
T-05-Spreadsheet_import.pdf - REST services
T-06-REST_services.pdf - XPath and XML
T-07-XPath.pdf
10:00 - 10:30 Review of yesterday's exercises, gotchas and encountered issues
10:30 - 11:00 Taverna advanced exercises
- Nested Workflows
T-08-Nested_workflows.pdf - Reusing workflows from myExperiment
T-09-myExperiment.pdf- Combining workflows from myExperiment
- GO associations
- Simple text mining
11:00 - 11:30 Coffee
11:30 - 13:00 Taverna advanced exercises (continued)
- Advanced Taverna features
T-10-Advanced_Taverna.pdf- List handling
- Looping asynchronous services
- Looping
- Control links
- Retries
- Parallel Service invocation
- Taverna components
T-11-Components.pdf
13:00 - 14:00 Lunch
14:00 - 16:00 Taverna advanced exercises (continued)
- .. or Design your own workflow
10:00 - 10:30 Review of yesterday's exercises, gotchas and encountered issues
10:30 - 11:30 Demonstrations
- Taverna Command line tool [demo] doc]
- Taverna Online [demo http://onlinehpc.com/]
- Running workflows in the BioVeL portal [demo https://portal.biovel.eu/]
- R scripts - (if no admin privileges in lab) [demo]
11:30 - 12:00 Coffee
12:00 - 13:00 Taverna integration exercises (or continue from yesterday)
- Tool service
T-12-Tool_service.pdf - Interaction service
T-13-Interactions.pdf - R scripts (requires admin privileges)
T-14-R_script.pdf - Biodiversity research example
T-15-Biodiversity.pdf
13:00 - 14:00 Lunch
14:00 - 16:00 Taverna integration exercises (continued)
- ..or Design your own workflow
Taverna Tutorials by myGrid, University of Manchester is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.
Based on a work at https://github.com/taverna/taverna-tutorials.
