diff --git a/README.md b/README.md index bc28531..8f2887a 100644 --- a/README.md +++ b/README.md @@ -14,6 +14,8 @@ See [www.dsmz.de/pibac](https://www.dsmz.de/pibac) and our paper for details: **In-depth cultivation of the pig gut microbiome towards novel bacterial diversity and tailored functional studies** David Wylensek and Thomas C. A. Hitch et al. , corresponding author: Thomas Clavel +Note: This site is under construction. + ### External studies providing data: Xiao, Liang, et al. "A reference gene catalogue of the pig gut microbiome." Nature microbiology 1.12 (2016): 16161. https://doi.org/10.1038/nmicrobiol.2016.161 @@ -34,9 +36,13 @@ Xiao, Liang, et al. "A reference gene catalogue of the pig gut microbiome." Natu Accession codes of the used gut metagenome sequences: European Nucleotide Archive: [PRJEB11755](http://www.ebi.ac.uk/ena/data/view/PRJEB11755) -## Pipelines: +## Phylogenetic Tree: + +Tree was constucted from GTDB-Tk maker genes, including GTDB-Tk taxonomy information and ANI scores to the GTDB reference genomes. -![pipeline](/images/pipeline.png) +![tree](/images/pibac_tree_mag_isolates_v2.png) + +## Pipelines: We recommend the use of [Bioconda](http://bioconda.github.io/) diff --git a/images/pibac_tree_mag_isolates_v2.png b/images/pibac_tree_mag_isolates_v2.png new file mode 100644 index 0000000..2c3fd8f Binary files /dev/null and b/images/pibac_tree_mag_isolates_v2.png differ