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iMGCM - Evaluation of assembly and binning strategies

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Quast

Quast

Quality control of metagenomic assembly using recovered known genomes and QUAST. Reference genomes were selected using GTDBTk. Clusters with MAGs form all-in-one, single and extra assembly were selected.

Different assembly evaluation metrics by QUAST5 using highly-related NCBI RefSeq-Genomes (n=26, ANI>99%) as reference genomes

Accession	Oranism Name
GCF_000007905.1	Helicobacter hepaticus ATCC 51449
GCF_000020225.1	Akkermansia muciniphila ATCC BAA-835
GCF_000143205.1	Lactococcus lactis subsp. cremoris NZ9000
GCF_000239935.1	Leuconostoc citreum LBAE E16
GCF_000270205.1	Candidatus Arthromitus sp. SFB-mouse-Japan
GCF_000317915.1	Enterococcus faecalis str. Symbioflor 1
GCF_000403215.1	Lachnospiraceae bacterium A4
GCF_000403275.1	Lachnospiraceae bacterium 28-4
GCF_000403315.2	Lachnospiraceae bacterium A2
GCF_000403335.2	Lachnospiraceae bacterium COE1
GCF_000403395.2	Anaerotruncus sp. G3(2012)
GCF_000403455.2	Dorea sp. 5-2
GCF_000403495.2	Lachnospiraceae bacterium 10-1
GCF_000403845.2	Eubacterium sp. 14-2
GCF_000508985.1	Clostridiales bacterium VE202-09
GCF_000686565.1	Helicobacter bilis ATCC 51630
GCF_000765685.1	Helicobacter sp. MIT 03-1616
GCF_000765745.1	Helicobacter apodemus
GCF_001045685.1	Pseudomonas aeruginosa DSM 50071 = NBRC 12689
GCF_001436695.1	Lactobacillus taiwanensis DSM 21401
GCF_001945605.1	Dubosiella newyorkensis
GCF_002201475.1	Acutalibacter muris
GCF_002201515.1	Muribaculum intestinale
GCF_002209165.1	Staphylococcus sciuri
GCF_002221595.1	Turicimonas muris
GCF_900157005.1	Mucispirillum schaedleri ASF457