DESCRIPTION

Package: MetCirc
Type: Package
Title: Navigating mass spectral similarity in high-resolution MS/MS 
    metabolomics data
    metabolomics data
Version: 1.37.0
Date: 2024-10-16
Authors@R: c(person(given = "Thomas", family = "Naake",
    email = "thomasnaake@googlemail.com",
    role = c("aut","cre")),
  person(given = "Johannes", family = "Rainer",
    email = "johannes.rainer@eurac.edu",
    role = "ctb"),
  person(given = "Emmanuel", family = "Gaquerel",
    email = "emmanuel.gaquerel@ibmp-cnrs.unistra.fr", role = "aut"))
Author: Thomas Naake <thomasnaake@googlemail.com>, 
    Johannes Rainer <johannes.rainer@eurac.edu> and Emmanuel Gaquerel
    <emmanuel.gaquerel@ibmp-cnrs.unistra.fr>
Maintainer: Thomas Naake <thomasnaake@googlemail.com>
VignetteBuilder: knitr
Depends:
    R (>= 4.4),
    amap (>= 0.8),
    circlize (>= 0.4.16),
    scales (>= 1.3.0),
    shiny (>= 1.8.1.1),
    Spectra (>= 1.15.3)
Imports:
    ggplot2 (>= 3.5.1),
    MsCoreUtils (>= 1.17.0),
    S4Vectors (>= 0.43.1)       
Suggests:
    BiocGenerics,
    graphics (>= 4.4),
    grDevices (>= 4.4),
    knitr (>= 1.48),
    testthat (>= 3.2.1.1)
biocViews: ShinyApps, Metabolomics, MassSpectrometry, Visualization
Description: MetCirc comprises a workflow to interactively explore 
  high-resolution MS/MS metabolomics data. MetCirc uses the Spectra object 
  infrastructure defined in the package Spectra that stores 
  MS/MS spectra. MetCirc offers functionality to calculate 
  similarity between precursors based on the normalised dot product, neutral
  losses or user-defined functions and 
  visualise similarities in a circular layout. Within the interactive framework
  the user can annotate MS/MS features based on their similarity to 
  (known) related MS/MS features. 
License: GPL (>= 3)
RoxygenNote: 7.2.2