A comprehensive sensor library for Shack-Hartmann Wavefront Sensors

Python package for high-performance spatial light modulator (SLM) control and holography. Supports features from aberration-corrected 3D point clouds to automated Fourier-domain calibrations.

Object Oriented Python Adaptive Optics

An object-oriented adaptive optics real-time control software written in Python. The goal is to be a universal and simple to use python package while maintaining enough real-time performance to be widely applicable within the AO community.

Simulation tool that utilises a Fourier domain adaptive optics model to enable rapid Monte Carlo characterisation of free space optical links between the Earth and satellites

This code is associated with the paper from Raghavendra et al., "Measurement of retinal blood flow precision in the human eye with multimodal adaptive optics imaging". BOE, 2024. https://doi.org/10.1364/BOE.524944. Made available here is an analysis pipeline for measuring single-cell velocity of blood cells from space-time images.

A useful set of tools for Adaptive Optics in Python

Simple, extensible, plugin-based feedback loop software, with a primary focus on supporting adaptive optics applications.

Python library for control of microscope devices, supporting hardware triggers and distribution of devices over the network for performance and flexibility.

Python code for Zernike polynomials

Framework for adaptive optics data analysis

Automontaging for AO images

This project deals with system identification and machine learning of large-scale deformable mirrors used in adaptive optics. I have submitted two papers that deal with this important problem. The approaches can be generalized two other problems of estimating large-scale system with the dynamics described by partial differential equations.

Correctness tests for AOtools modules and functions.

daoSPIM microscope project: software and hardware

In free-space optical communication, the propagation of a laser beam through the atmosphere causes wavefront distortions that decrease the coupling efficiency (CE) from free space to single-mode fiber. With this MATLAB rutine we verify coupling efficiency using Adaptive Optics

A Fixation Target GUI that uses a secondary monitor (or lightcrafter) as the fixation screen.

Prediction of Zernike coefficients by artificial intelligence

Code that removes residual distortions due to eye motion from images and videos processed via strip or grid registration.

A repository containing validated coordinate structure measurements. All of these metrics are designed for Adaptive Optics opthalmoscope images.