Integration of pathway-related information from MSigDB in BEL

GMT files for the mulea R package

gene-set enrichment visualization.

Assessing dIfferential expression, dispersion, distribution analyses on TCGA tumour-normal RNA-seq datasets

GOpiscator is a command-line tool for performing gene set enrichment analysis using the Gene Ontology (GO) database.

AskoR pipeline: analysis of gene expression data, using edgeR.

Transcriptiome Analysis in Python Imported from R

Bayesian tests for set enrichment 🍞

condense GSEA terms

A library for differential expression and gene set enrichment analysis based on hydra and pydantic.

Package to gather gene information, annotations, and functions

mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate

DBRetina python package

A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.

Experimental version of data package associated with chipenrich

Flexible gene set enrichment analysis

Julia implementation of the next generation GSEA 🏔️

Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)

piano - An R/Bioconductor package for gene set analysis