PopHumanVar is an interactive app created with Shiny, that can be used for the functional characterization and prioritization of genomic variants

Tool for inferring global ancestry proportions in admixed samples using deep learning

Population genetic model of polygynous biparental inbreeding with no polyandry

Shiny app with a genetic drift simulator

Code repository for the publication: "Genomic evidence of contemporary hybridization between Schistosoma species"

The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support

A demo project for class AGRO/ASCI-931: population genetics

Simulation workshop for the Globe Institute, University of Copenhagen

An individual-based Wright-Fisher model with infinite site genomes and customizable distribution of fitness effects

tools for RAD-seq, MIG-seq processing and analysis

Calculates the maximum likelihood DFE for a SFS (selected) based on the categorical distribution and a reference SFS (neutral)

Introduction to Human Population Genetics

Analyzing the offspring of 11 Quercus muehlenbergii individuals at the Morton Arboretum for hybridization and predictors of pollination success.

Code repository for the publication: "Whole-genome sequencing of Schistosoma mansoni reveals extensive diversity with limited selection despite mass drug administration"

Genotype Representation Graph Library

Fine-scale genetic structure in South Western Cameroon

This is a package of APIs for performing population genetics simulations and analyses in parallel on the GPU.

Create population genetics simulations

Scripts and code for Kākāpō genomic data