Collection of blogs/publications by Nepali devs.

Standalone tool and library allowing to work with barcoded linked-reads

Scalable long read self-correction and assembly polishing with multiple sequence alignment

Assembled Phi-X174 genome using Overlap Graph, Kmer Composition and De-Bruijn Graph.

Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads

A Raspberry Pi Simple python Stand Alone Local Network Web Server. Automatically reads folder and file entries into a right pane selection list. Selected folder opens a new browser tab and Selected file displays content in browser left pane iframe. Right pane list can be ordered by date/time or alphabetic ascending or descending via settings.py …

The Clip&Merge Method for paired end read merging and adapter clipping, quality trimming and other FastQ operations.

🦀 Fqkit: A simple and cross-platform program for fastq file manipulation

📚 A list of physical books I own or want to read.

R functions and workflow for submitting amplicon sequence data to the ENA.

Sanyojan is a highly sensitive, hybrid genome assembler.

Study material (pdfs, notes, free course download links etc) for HACKERS

📚My reads project. A Book Tracking App.

A tool to index and extract data from gzipped FASTQ files

Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, …

Ancient DNA Read Simulator for Metagenomic

Convert NGS reads to analysis ready variants with GATK's ReadsPipelineSpark

read data generator

Genome read alignments visualizer

Preprocessing of raw reads obtained using ARTIC's protocol for sequencing SARS-CoV-2 genome.