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2021-06-28 Torbjorn Rognes <[email protected]>
* Version 2.1.1
* Fix for very long header strings in NCBI database files
2018-05-04 Torbjorn Rognes <[email protected]>
* Version 2.1.0
* Fix for changes to NCBI database format
* Added query description to XML output
* Fixed compilation errors with C++11
2015-12-18 Torbjorn Rognes <[email protected]>
* Version 2.0.12
* Fixed a bug in memory allocation that caused segfaults.
* Fixed a minor memory leak.
2014-06-27 Torbjorn Rognes <[email protected]>
* Version 2.0.11
* Resolved a bug that resulted in SWIPE terminating with a fatal
internal error in the align function. After recomputing an alignment
score > 32768 with 16-bit magnitude, a subsequent 16-bit score
computation could be wrong.
* Reduced memory usage when a the number of alignments or results
asked for using the -b and -v options was higher than the possible
maximum number.
2014-06-25 Torbjorn Rognes <[email protected]>
* Version 2.0.10
* Resolved an inconsistency in SWIPE with custom non-symmetric
matrices. This problem could result in SWIPE terminating with a
fatal internal error in the align function.
2014-01-21 Torbjorn Rognes <[email protected]>
* Version 2.0.9
* Changed inline assembler syntax (adding register prefix) to
adapt to the LLVM clang compiler on Mac
* Improved detection of CPU features (SSSE3 etc) and added
alternative code for the search7 function for CPUs with
and without SSSE3
* Fixed an inconsistency in the counting of 'positives', i.e.
similar but non-identical residues
* Added binaries for Mac, including an openmpi version
2014-01-17 Torbjorn Rognes <[email protected]>
* Version 2.0.8
* Removed a bug in computation of the score of alignments
with a score higher than 32767
* Removed a bug in computation of the alignment of sequences
that scored higher than 65535
* No Mac executable this time, but coming soon (need to adapt
inline assembler syntax to the LLVM clang compiler)
2013-05-02 Torbjorn Rognes <[email protected]>
* Version 2.0.7
* Removed a few memory leaks discovered with Valgrind
2013-05-01 Torbjorn Rognes <[email protected]>
* Version 2.0.6
* Added some information to the README file
* Scoring system overview in scoring.pdf
* Code changes to avoid warnings with g++
* Compiled on Macs too
* Minor typo in help text corrected
* Changed default compiler to GNU g++
* Increased size of buffers for deflines
* Added option (-z) to set effective length of the database
2012-08-09 Torbjorn Rognes <[email protected]>
* Version 2.0.5
* Added option (-H) to show taxid and membership/link bits
2012-07-04 Torbjorn Rognes <[email protected]>
* Version 2.0.4
* Fixed display of header lines with TSV format (-m 9)
2012-06-11 Torbjorn Rognes <[email protected]>
* Version 2.0.3
* Fixed bug with option "-c" not being allowed
2012-06-08 Torbjorn Rognes <[email protected]>
* Version 2.0.2
* Fixed bug relating to amino acids symbols "JOU*" on non-SSSE3 cpus
* Minor output format changes / bug fixes
2012-02-24 Torbjorn Rognes <[email protected]>
* Version 2.0.1
* hits.cc: Fixed bug in display of alignment coordinates
in XML and TSV formats
2012-02-01 Torbjorn Rognes <[email protected]>
* Version 2.0.0
* Initial release of version 2 with many new features
2011-04-11 Torbjorn Rognes <[email protected]>
* Version 1.0
* Added scoring matrices to the distribution
2011-02-25 Torbjorn Rognes <[email protected]>
* Version 1.0
* Initial release of the software