setup.py

from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
import numpy


compile_flags = ['-O3', ]
ext_mods = [Extension(name='combo.misc._src.traceAB',
                      sources=['combo/misc/_src/traceAB.pyx'],
                      include_dirs=[numpy.get_include()],
                      extra_compile_args=compile_flags),
            Extension(name='combo.misc._src.cholupdate',
                      sources=['combo/misc/_src/cholupdate.pyx'],
                      include_dirs=[numpy.get_include()],
                      extra_compile_args=compile_flags),
            Extension(name='combo.misc._src.diagAB',
                      sources=['combo/misc/_src/diagAB.pyx'],
                      include_dirs=[numpy.get_include()],
                      extra_compile_args=compile_flags),
            Extension(name='combo.gp.cov._src.enhance_gauss',
                      sources=['combo/gp/cov/_src/enhance_gauss.pyx'],
                      include_dirs=[numpy.get_include()],
                      extra_compile_args=compile_flags),
            Extension(name='combo.misc._src.logsumexp',
                      sources=['combo/misc/_src/logsumexp.pyx'],
                      include_dirs=[numpy.get_include()],
                      extra_compile_args=compile_flags)
            ]
setup(
    name='combo',
    version='0.2',
    author='Tsuyoshi Ueno',
    author_email="tsuyoshi.ueno@gmail.com",
    packages=['combo', 'combo.misc', 'combo.misc._src',
              'combo.gp', 'combo.gp.cov', 'combo.gp.cov._src',
              'combo.gp.mean', 'combo.gp.core', 'combo.gp.inf',
              'combo.gp.lik', 'combo.opt', 'combo.blm.lik', 'combo.blm.prior',
              'combo.blm.basis', 'combo.blm.inf', 'combo.blm.core',
              'combo.blm.lik._src', 'combo.blm', 'combo.search',
              'combo.search.discrete'],
    package_dir={'combo': 'combo'},
    cmdclass={'build_ext': build_ext},
    ext_modules=ext_mods
)