test.yaml

name: Test

on: push

jobs:
  validate-notebooks:
    name: Validate Notebooks
    runs-on: ubuntu-latest
    defaults:
      run:
        # Required for "run" commands to execute in the conda env.
        shell: bash -l {0}
    steps:
      - name: Checkout Code
        uses: actions/checkout@v3
      - name: Set Up Conda Environment
        uses: conda-incubator/setup-miniconda@v2
        with:
          activate-environment: uc-python
          environment-file: environment.yml
      - name: Set Up Jupyter Kernel
        run: |
          python -m ipykernel install --user --name uc-python
      - name: Install Papermill
        run: |
          conda install papermill
      - name: Prep notebooks
        run: |
          # Remove nb cells that should be skipped in CI.
          for nb in notebooks/*.ipynb; do
            python scripts/prep_nb_for_ci.py "$nb"
          done
      - name: Run notebooks
        run: |
          for nb in notebooks/*.ipynb; do
            echo "running $nb"
            output=$(papermill --cwd notebooks/ "$nb" -)
          done