From 1042d4e44993d07f1ae1c542a7c1fa57e2529a96 Mon Sep 17 00:00:00 2001 From: Anna Foix Date: Mon, 21 Oct 2024 15:17:20 +0100 Subject: [PATCH] fix mef nuclei path + comment out some datasets in the slurm script --- scripts/shapeembed/slurm_sweep_shapeembed.py | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/scripts/shapeembed/slurm_sweep_shapeembed.py b/scripts/shapeembed/slurm_sweep_shapeembed.py index a9722baa..15facfca 100755 --- a/scripts/shapeembed/slurm_sweep_shapeembed.py +++ b/scripts/shapeembed/slurm_sweep_shapeembed.py @@ -19,13 +19,13 @@ datasets_pfx = '/nfs/research/uhlmann/afoix/datasets/image_datasets' datasets = [ - ("synthetic_shapes", f"{datasets_pfx}/synthetic_shapes/", "mask", 1579) +# ("synthetic_shapes", f"{datasets_pfx}/synthetic_shapes/", "mask", 1579) # ("tiny_synthcell", f"{datasets_pfx}/tiny_synthcellshapes_dataset/", "mask") # ("vampire", f"{datasets_pfx}/vampire/torchvision/Control/", "mask") -, ("mefs_cells", f"{datasets_pfx}/mefs_single_object_cell/", "mask", 83) -, ("vampire_nuclei", f"{datasets_pfx}/vampire_nuclei/", "mask", 23) -, ("binary_vampire", f"{datasets_pfx}/binary_vampire/", "mask", 291) -, ("bbbc010", f"{datasets_pfx}/bbbc010/BBBC010_v1_foreground_eachworm/", "mask", 323) + ("mefs_cells", f"{datasets_pfx}/mefs_single_object_cell/", "mask", 83) +, ("mefs_nuclei", f"{datasets_pfx}/mefs_single_object_nuclei/", "mask", 23) +#, ("binary_vampire", f"{datasets_pfx}/binary_vampire/", "mask", 291) +#, ("bbbc010", f"{datasets_pfx}/bbbc010/BBBC010_v1_foreground_eachworm/", "mask", 323) #, ("synthcell", f"{datasets_pfx}/synthcellshapes_dataset/", "mask") , ("helakyoto", f"{datasets_pfx}/H2b_10x_MD_exp665/samples/", "mask", 61) #, ("allen", f"{datasets_pfx}/allen_dataset/", "mask")