diff --git a/.github/workflows/joss_gen.yml b/.github/workflows/joss_gen.yml
index ef3408b83..a59399842 100644
--- a/.github/workflows/joss_gen.yml
+++ b/.github/workflows/joss_gen.yml
@@ -40,4 +40,4 @@ jobs:
           # This is the output path where Pandoc will write the compiled
           # PDF. Note, this should be the same directory as the input
           # paper.md
-          path: joss_paper/paper.pdf
\ No newline at end of file
+          path: joss_paper/paper.pdf
diff --git a/.gitignore b/.gitignore
index 1c0a3da63..3eeabb79c 100644
--- a/.gitignore
+++ b/.gitignore
@@ -8,3 +8,5 @@
 /Manifest.toml
 /docs/build/
 /docs/src/generated
+paper-UnfoldMakie/
+runner.jl
diff --git a/joss_paper/paper_UM.bib b/joss_paper/paper_UM.bib
index 708987ed5..a53f23206 100644
--- a/joss_paper/paper_UM.bib
+++ b/joss_paper/paper_UM.bib
@@ -289,5 +289,5 @@ @software{Schepers_UnfoldSim_jl
   title = {{UnfoldSim.jl}},
   year={2024},
   doi={10.5281/zenodo.13933412},
-  url = {https://github.com/unfoldtoolbox/UnfoldSim.jl}
-}
\ No newline at end of file
+  url = {https://github.com/unfoldtoolbox/UnfoldSim.jl
+  }