r.yml

# This workflow uses actions that are not certified by GitHub.
# They are provided by a third-party and are governed by
# separate terms of service, privacy policy, and support
# documentation.
#
# See https://github.com/r-lib/actions/tree/master/examples#readme for
# additional example workflows available for the R community.
name: R Package CI

on:
  push:
    branches: [ "master" ]
  pull_request:
    branches: [ "master" ]

permissions:
  contents: read

jobs:
  build:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [windows-latest]
        r-version: ['4.1.1']

    steps:
      - uses: actions/checkout@v4

      - name: Set up R ${{ matrix.r-version }}
        uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.r-version }}

      - name: Install system dependencies on Windows
        if: runner.os == 'Windows'
        run: |
          choco install qpdf
          choco install pkgconfiglite
          choco install make
          choco install miktex # Install LaTeX

      - name: Set CRAN mirror and install R package dependencies
        env:
          GITHUB_PAT: ${{ secrets.GITHUB_PAT }}
        run: |
          Rscript -e 'options(repos = c(CRAN = "https://cloud.r-project.org/")); install.packages("remotes"); remotes::install_github("cran/basicspace", force = TRUE); remotes::install_deps(dependencies = TRUE)'

      - name: Check
        run: |
          Rscript -e 'rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error")'