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Changelog

All notable changes to this project will be documented in this file.

Format and Versioning Scheme

The format is based on Keep a Changelog.

SciPaMato is an application. Therefore, the versioning scheme is not adhering to Semantic Versioning, which is mostly targeting software components or libraries. Nevertheless, I’m sticking with three part version numbers (e.g. 1.0.0), increasing the second number for bigger changes and the third number for relatively small changes and bug fixes. The first part of the version number will most likely remain version 1 for a longer period of time and may only change with a major rewrite of parts or the entire applicatin.

In the version prior to 1.0.0, the second digit indicated the the development iteration, the third was keeping track of the number of the release within that iteration. Given a version number 0.ITERATION.RELEASE, we were incrementing

  1. ITERATION version matching the project iteration

  2. RELEASE version with every release within the given iteration.

💡
 E.g. release 0.5.6 was the 6th release in iteration number 5.
ℹ️
 References to user stories are in the form Iteration/Story-Number.

[unreleased]

2.1.1 — 2025-01-25

Changed

  • Bumped spring-boot, wicket, jOOQ, KRis, lombok, mockk, equalsverifier, gradle

  • Removed debug logs for complex search

2.1.0 — 2025-01-08

Changed

  • Bumped kotlin, coroutines, wicket-bootstrap, wicketstuff, mockk, equalsverifier, gradle

2.0.11 — 2024-12-19

Changed

  • Bumped spring-boot, spring-dependency-management, wicket, jOOQ, KRis, guava

2.0.10 — 2024-12-07

Changed

  • Bumped spring-boot, spring-cloud-starter-openfeign, spring-boot-admin-starter-client, lombok, jooq-gradle-plugin, reckon, sonarqube-plugin, equalsverifier

2.0.9 — 2024-11-15

Fixed

  • reverted gradle update due to issue on server

2.0.8 — 2024-11-15

Changed

  • Bumped spring-boot-admin-starter-client, gradle, jooq-gradle-plugin, equalsverifier

Fixed

  • avoid a null poiner exception

2.0.7 — 2024-10-31

Fixed

  • avoid a null poiner exception

2.0.6 — 2024-10-29

Changed

  • bumped jooq-gradle-plugin

Fixed

  • #727 Open Help/Changelog in new browser window

2.0.5 — 2024-10-24

Changed

  • bumped spring-boot, spring-boot-admin-starter-client, wicket, wicketbootstrap, wicketstuff, feign, guava, jasperreports, gradle, jooq-gradle-plugin, jaxb-gradle-plugin, lombok-gradle-plugin, mockk, equalsverifier

2.0.4 — 2024-09-19

Changed

  • #718 Switch license plugin

  • bumped spring-boot, kotlin, coroutines, gradle, jOOQ, guava, lombok, spring-cloud-starter-openfeign, feign-jaxb-jarkarta, kris, spring-boot-admin-starter-client, spring-dependency-management, jakarta.el-api, jnuit5, mockk, equalsverifier, sonarqube, detekt, dependency-license-report, docker/login-action gradle/actions

  • migrated from gradle-build-action to gradle/actions/setup-gradle

2.0.3 — 2024-06-20

Changed

  • #712 Use Optravis jooq-plugin instead of jooqModelator

  • Bumped spring-boot, wicketstuff, feign

Removed

  • #712 Remove usage of jooqModelator gradle plugin

2.0.2 — 2024-06-09

Changed

  • Bumped wicketbootstrap, wicketstuff, spring-boot-admin-starter-client, kotest

Fixed

  • #701 Fix deletion of attachments with very long names

  • #708 Keep back-button hidden in public detail page after opening from search list

2.0.1 — 2024-06-02

Changed

  • Bumped spring-boot, spring-dependency-management, spring-cloud-starter-openfeign, spring-boot-admin-starter-client, kotlin, kotlinx-coroutines, wicket jasperreports, jakarta.el-api, guava, kotest, mockk, equalsverifier, gradle, docker-login-action, wrapper-validation-action

  • Refactored: Prepared for upcoming kotlin-2.0 migration

Fixed

  • Fix Tab Title to "Code"

2.0.0 — 2024-03-28

Changed

  • #669 Bump Java version to 21

  • #657 Bump major components (spring-boot-3.2, jOOQ 3.18, Flyway, wicket-10, spring-batch 5, jakarta, font-awesome 6)

  • #602 Bump Wicket Stack

  • Bumped spring-boot, kotlin, kotlinx-coroutines, wicket, wicketstuff, jOOQ, flyway, KRis, guava, lombok, spring-cloud-starter, gradle, KRis, detekt, sonarqube, openfeign, jasperreports, kotest, mockk, equalsverifier, testcontainers,

1.10.3 — 2024-02-04

Changed

  • #601 Migrate from Bootstrap 4.x to 5.3

  • Bumped dependencies kotlin, spring-boot-admin-starter-client, guava, feign, spring-cloud-starter-openfeign, gradle, reckon, jaxb, detekt, unit5, mockk, testcontainers, equalsverifier, github actions gradle-build-action, gradle-wrapper-validation, cache, upload-artifact and codeql

1.10.2 — 2023-12-08

Changed

  • Bumped dependency kotlin, spring boot, wicket, wicketstuff, feign, spring-boot-admin-starter-client, jasperreports, testcontainers-java monorepo, equalsverifier, gradle, detektplugin, jaxb gradle plugin, setup-java action

  • #620 Reverted (Data Migration: Update Abstract of old Studies with PM_ID)

1.10.1 — 2023-12-07

Changed

  • #620 Data Migration: Update Abstract of old Studies with PM_ID

1.10.0 — 2023-11-14

Added

  • #604 New (internal) Reference Abstract Report .Changed

  • #338 Migrate from Bootsrap 3.4 to 4.0

  • Bumped dependency kotlin, spring-boot, spring-dependency-management, spring-boot-admin, feign, flyway, lombok, junit5, kotest, equalsverifier, detekt, reckon

1.9.0 — 2023-10-08

Changed

  • Bumped dependency postgresql, kris, gradle, sonarqube, setup-java-action

Removed

  • Removed java platform 11 compatibility: Require minimum java platform 17.

1.8.11 — 2023-09-03

Changed

  • Bumped kotlin, kotlinx-corouteines, wicket, wicketstuff, spring-boot, spring-dependency-management, spring-cloud-starter-openfeign, spring-boot-admin-starter-client, feign, flyway, kris-core, jasperreports lombok, junit5, kotest, mockk, equalsverifier, testcontainers

  • Bumped gradle, sonarqube plugin, detekt

  • Bumped checkout action, docker login action

1.8.10 — 2023-06-25

Changed

  • Bumped spring-boot, kotlin, couroutines, wicket, wicketstuff, flyway, jasperreports, kotest, kluent, testcontainers, detekt, equalsverifier, sonarqube-gradle-plugin, docker-login-action

  • Let scipamato run on JVM 17

Fixed

  • #528 Handle authors from PubMed with greek capital letters that otherwise fail author string validation

1.8.9 — 2023-04-29

Changed

  • Bumped kotlin, jasperreports, flyway, junit-jupiter, gradle, reckon

Fixed

  • Typo in German localization when syncronizing core to public

1.8.8 — 2023-04-20

Changed

  • Bumped spring-boot, wicket, wicketstuff, jasperreports, feign, kotest, mockk, gradle, gradle-jaxb-plugin

1.8.7 — 2023-04-05

Changed

  • #463 Synchronization from core to public to use german labels for concatenated short studies

  • Bumped kotlin, flyway, KRis, gradle, testcontainers

1.8.6 — 2023-03-25

Changed

  • Bumped spring-boot, flyway, KRis, kotlin-logging, feign, spring-cloud-start-openfeign, jasperreports, wicket-jquery-ui, gradle-wrapper, lombok, sonarqube-gradle-plugin, kotest, mockk, equalsverifier

1.8.5 — 2023-01-19

Added

  • kotest

Changed

  • Bumped kotlin, spring-boot, wicket, wicketstuff, wicket-spring-boot-starter, spring-boot-admin-starter-client, flyway, lombok, kris spring-dependency-management, spring-cloud-starter-openfeign, feign, kotlin-loggin, mockk, spring-mockk, kluent, equalsverifier, junit5, kotest, testcontainers, gradle, sonarqube-plugin, detekt, login-action

  • #360 Use version catalogs (instead of buildSrc/Lib) for version management

Removed

  • spek, kwik, jcenter

1.8.4 — 2022-09-24

Changed

  • Bumped spring-boot, wicket-jquery-ui, spring-boot-admin, flyway, openfeign, spring-dependency-management, junit-jupiter, spek, mockk, jaxb-gradle-plugin, lombok-gradle-plugin

1.8.3 — 2022-08-18

Changed

  • Bumped spring-boot, spring dependency-management, spring-boot-admin, junit-jupiter, mockk, equalsverifier

1.8.2 — 2022-07-22

Changed

  • Bumped spring-boot, kotlin, coroutines, wicket, wicketstuff, jOOQ, openfeign, spring-dependency-management, jasperreports, detekt, testcontainers, gradle-wrapper, lombok-gradle-plugin

1.8.1 — 2022-06-27

Fixed

  • Main class name for core application after conversion to kotlin

1.8.0 — 2022-06-27

Changed

  • Bumped spring-boot

Fixed

  • #344 Handle spring batch data synchronization from core to public asynchronously

1.7.12 — 2022-06-25

Changed

  • Bumped spring-boot, wicket-jquery-ui, flyway, kotlin, kotlinx-coroutines, jOOQ, spring-cloud-starter, spring-boot-admin-starter-client, lombok-gradle-plugin, sonarqube-gradle-plugin

1.7.11 — 2022-05-21

Changed

  • Bumped spring-boot, wicket and wicketstuff, flyway, kotlin-logging, spring-cloud, spring-boot-admin, mockk, testcontainers, lombok-gradle-plugin

  • #333 Organize licenses for license report

1.7.10 — 2022-04-21

Changed

  • Bumped spring-boot, kotlin, wicket, wicketstuff, jOOQ, flyway, detekt, spring-boot-admin, coroutines, testcontainers, lombok-gradle-plugin

1.7.9 — 2022-04-03

Changed

  • Bumped kotlin, spring-boot, wicket and wicketstuff, jasperreports, flyway, spring-boot-admin, gradle-wrapper

1.7.8 — 2022-03-25

Changed

  • Bumped spring-boot, flyway, jOOQ, spring-cloud-starter, gradle-wrapper, spek, mockk, equalsverifier

1.7.7 — 2022-02-25

Changed

  • Bumped spring-boot, wicket, wicketstuff, wicket-jquery-ui, spring-boot-admin-starter, jOOQ, flyway, jasperreports, gradle, springmockk, equals-verifier, gradle versions plugin, lombok-gradle-plugin, reckon-gradle-plugin

1.7.6 — 2022-01-21

Changed

  • Bump spring-boot, gradle-wrapper, jOOQ, flyway, wicket-jquery-ui, KRis-core, mockk, openfeign, versions gradle plugin, equalsverifier, spring-boot-admin, testcontainers

1.7.5 — 2021-12-22

Changed

  • Bump spring-boot, wicket-spring-boot-starter, flyway

1.7.4 — 2021-12-20

Security

  • [CVE-2021-42550] Bump logback from 1.2.7 to 1.2.9

1.7.3 — 2021-12-19

Added

  • Bumped wicket-spring-boot-starter, springmockk, spring-boot-admin, kotlin-loggin

Security

  • [CVE-2021-45105] Bump log4j from 2.16.0 to 2.17.0

1.7.2 — 2021-12-15

Changed

  • Bumped flyway, equalsverifier, gradle

Security

  • [CVE-2021-44228] (Log4Shell): Bump log4j from 2.15.0 to 2.16.0

1.7.1 — 2021-12-14

Changed

  • Bumped kotlin, kotlin-loggin, flyway, wicketstuff

Security

  • [CVE 2021-44228] (Log4Shell): Even though SciPaMaTo uses logback for logging, we now use log4j-2.15.0 for the api and log4j-to-slf4j to be on the safe side.

1.7.0 — 2021-12-07

Changed

  • Bumped spring-boot, spring-cloud, spring-cloud-starter, jOOQ, flyway, wicket, gradle, detekt, junit-jupiter, kotlin-logging, equalsverifier, reckon

Removed

  • dependency on jackson-module-kotlin, a few explicit jaxb-dependencies

1.6.9 — 2021-11-18

Added

  • #306 Population Filter & Search

Changed

  • Bumped spring-boot, kotlin, flyway, mockk

1.6.8 — 2021-11-14

Added

  • #292 Add option to exclude codes from a complex search

Changed

  • Bumped gradle, spring-boot-admin, wicket, wicketstuff, flyway, jasperreports, lombok-gradle-plugin, jackson-module-kotlin

1.6.7 — 2021-10-26

Changed

  • Bumped spring-boot, jackons-module-kotlin, wicket-jquery-ui, spring-boot-starter-admin, flyway, openfeign, jasperrports, testcontainers, equalsverifier

Fixed

  • #300 Fix synchronization corner case with Newsletters with Papers without code

1.6.6 — 2021-09-23

Changed

  • Bumped spring-boot

1.6.5 — 2021-09-23

Changed

  • Bumped kotlin, spring-boot-admin, kotlin-logging, detekt, wicket, wicketstuff, flyway, jOOQ, junit-jupiter, lombok-gradle-plugin

Fixed

  • #294 Searching by Newsletter Issue and other fields don’t provide all search options

1.6.4 — 2021-08-22

Changed

  • Bumped kotlin, spring-boot, gradle, flyway, kluent, kotlin-logging, jaxb-core and impl spring-boot-admin, openfeign, detekt, equalsverifier, spek, testcontainers, lombok-gradle-plugin

1.6.3 — 2021-07-10

Changed

  • Bumped wicket, wicketstuff, jackson-kotlin, flyway, equalsverifier

Fixed

  • Fixed typo in Code 1S in German

1.6.2 — 2021-07-04

Changed

  • Bump spring-boot, kotlin, kluent, mockk, spring-boot-admin, jOOQ, gradle, wicket-jquery-ui, flyway

1.6.1 — 2021-06-19

Changed

  • Bumped spring-boot, flyway, gradle-versions-plugin, jaxb-gradle-plugin, kotlin-logging spring-cloud, spring-cloud-starter, gradle-wrapper, kluent, sonarqube-gradle-plugin

1.6.0 — 2021-05-26

Changed

  • Bump spring-boot, gradle-wrapper, kotlin, gradle-testsets-plugin, license-gradle-plugin, jaxbCore, openfeign jOOQ, flyway, jasperreports, junit, detekt, equalsverifier

1.5.12 — 2021-05-01

Changed

  • Bump flyway, jaxb-impl, SonarQube gradle plugin

  • Converted core-sync to kotlin

Fixed

  • Regression from #270 with puplicationYear being populated multiple times

1.5.11 — 2021-04-26

Fixed

  • Fixed regression in 1.5.10 with optimized layout

1.5.10 — 2021-04-25

Changed

  • Bumped spring-boot, wicket, wicketstuff, wicket-jqury-ui, wicket-bootstrap, flyway, jaxb-gradle-plugin lombok-gradle-plugin, jackson-kotlin, spring-boot-admin-starter, testcontainers, equalsverifier, jOOQ

Fixed

  • Optimized Layout for very small screens

1.5.9 — 2021-03-30

Added

  • #265 Enable complex search to filter for papers with or without attachments or by attachment name

Changed

  • Bumped spring-boot, kotlin, flyway, detekt, jackson-kotlin, gradle versions-plugin, kotlin-logging, mockk, spring-cloud-starter, openfeign, KRis

1.5.8 — 2021-03-03

Changed

  • Bumped spring-boot, kotlin, jOOQ, flyway, equalsverifier, kris, junit, mockk, gradle-wrapper wicket-jquery-ui, spring-boot-admin, testcontainers, font-awesome

Fixed

  • #262 Restore ability to delete searches (Restore Confirmation behavior)

1.5.7 — 2021-01-27

Added

  • #253 Review CSV Export - Followup

1.5.6 — 2021-01-27

Added

  • #250 Review CSV Export

Changed

  • Bumped spring-boot, spring-cloud-starter, spring-cloud-openfeign, jOOQ spek, testcontainers, kotlin-logging, detekt, flyway, wicket-jquery-ui, mockk, kluent, springmockk, gradle-wrapper, jackson-kotlin, spring-dependency-management, equalsverifier, sonarqube-plugin

1.5.5 — 2020-12-10

Changed

  • Bumped kotlin, spring-cloud, spring-cloud-starter, flyway

Fixed

  • #247 Fix captions in Paper Summary PDF

1.5.4 — 2020-12-01

Changed

  • Bumped spring-boot, kotlin, spring-cloud, spring-cloud-starter, jooq, flyway, wicket, wicketstuff, wicket-bootstrap, kwik, jaxb, jackson-kotlin, gradle, spek, kluent, spring-mockk, spring-boot-admin, jaxb-gradle-plugin, mockk

Fixed

  • #242 Only allow uploading attachments once paper is saved

  • #244 Fix searching papers by pmId

1.5.3 — 2020-11-08

Added

  • #236 Prepopulate field 'result exposure range' with value 'µg/m3' for new papers

Changed

  • Follow up of #215: Enlarge PMID field, make DOI smaller on smaller screens

  • #238 SciPaMaTo-Public: Hide 'Back' button from paper detail page when opend from result panel

1.5.2 — 2020-11-07

Changed

  • Bumped jasperreports, KRis, jOOQ, javax.el, testcontainers

Fixed

  • #232 Fix regression: Persisting papers with codes broken

1.5.1 — 2020-10-31

Changed

  • Bumped spring-boot, wicket, wicket-bootstrap, wicket-jquery-ui, jOOQ, detekt, mockk, kluent, kwik, kris, jasperreports, font-awesome, flyway, gradle, equalsverifier, lombok-gradle-plugin

  • Kotlin Conversion of common-pesistence-api, common-persistence-jooq, common-wicket, public-*

Fixed

  • #114 Reactivate integration-tests for SciPaMaTo public-web

1.5.0 — 2020-10-20

Changed

  • Bumped gradle, kotlin, kwik, equalsverifier, detekt, spek, junit, spring-cloud-starter, spring-cloud-openfeign, kotlin-logging, lombok-plugin, reckon gradle plugin

  • Renamed tab label in PaperEntryPage to align with field order

  • #198 Migrate to Wicket 9.0

  • #215 Improve Layout of various pages for small/medium screens

1.4.10 — 2020-08-14

Changed

  • Bumped spring-boot, gradle-wrapper, kwik, springmockk, detekt, spring-boot-admin spring-dependency-management plugin, lombok gradle plugin

  • Moved ID column in Result panel table to the end

  • Added some more logs for repo methods changing data

1.4.9 — 2020-08-05

Changed

  • #202 Auto-correct ahead-of-print articles from PubMed - case-insensitivity

Fixed

  • Wiki: fixed some typos

1.4.8 — 2020-08-03

Changed

  • Bumped spring-boot-starter, jOOQ, spring-boot-admin, spring-cloud, spring-cloud-starter-openfeign jasperreports

Fixed

  • #204 Fix storing newsletter topic sort

1.4.7 — 2020-07-21

Added

  • #202 Auto-correct ahead-of-print articles from PubMed

Changed

  • Bumped detekt, jooq-modelator, gradle-wrapper, jasperreports, spring-cloud, jooq, wicket, wicket-spring-boot-starter, wicketstuff, wicket-jquery-ui, wicket-bootstrap kotlin-logging, openfeign, fontawesome, equalsverifier, spek, spring-mockk, jooq-modelator-plugin, kwik

  • #196 Properly use UTF-8 property files for wicket localization

  • Rename master branch to main

Removed

  • #177 Removed mockito, mockito-kotlin, assertj. Converted all tests to kotlin.

1.4.6 — 2020-06-22

Changed

  • Bumped spring-boot-starter, spring-boot-admin, spring-cloud-starter, jOOQ, KRis, kotlin-logging, jaxb-impl, detekt, gradle-wrapper, spek, gadle, wicket-jquery-ui, equalsverifier, testcontainers, lombok-gradle-plugin, sonarqube-gradle-plugin, jooqModelator

1.4.5 — 2020-05-11

Changed

  • Bumped spring-boot, kotlin, detekt, KRis, kwik, wicket-boostrap, wicketstuff, font-awesome, gradle, junit-jupter, kluent, mockk, spring-cloud, wicket, KRis, testcontainers, openfeign lombok-gradle-plugin

  • #179 Enrich Changelog with Full Changelog and link to tree

Removed

  • apache-io, commons-lang3, commons-collections4, jool

1.4.4 — 2020-03-27

Changed

  • Bumped spring-boot, kotlin, gradle, detekt, jasperreports, junit, spring-cloud and starter, kotlin-logging, openfeign, equalsverifier, testcontainers, mockito, lombok-plugin, jaxb-plugin

1.4.3 — 2020-03-13

Added

  • Bumped kotlin, gradle-wrapper, jasperreports, spek, kluent, kris

1.4.2 — 2020-03-02

Changed

  • Bumped spring-boot-starter, jOOQ, wicket-spring-boot-starter, junit, gradle-wrapper, spring-boot-admin, kwik, detekt, equlalsverifier, testcontainers, mockito, spring-dependency-management plugin, lombok plugin, jaxb-plugin

  • #129 Replace copied JRis classes with ch.difty.kris:kris-core

1.4.1 — 2020-01-18

Changed

  • Bump dependencies: spring-boot-starter-parent, gradle-wrapper, wicket-bootstrap

1.4.0 — 2020-01-14

Changed

  • #136 Upgrade Spring-Boot to 2.2, Flyway 6.0, jOOQ 3.12.1

  • Bump dependencies: spring-boot-starter-parent, wicket, sicketstuff, wicket-spring-boot, kotlin, jOOQ, detekt, testSet-plugin, mockk, lombok-plugin wicket-jquery-ui, spring-cloud-starter, openfeign, testcontainers, mockito, kwik, kluent, spring-dependency-management, reckon, jaxb plugin, jasperreports, spring-boot-admin-starter-client, equalsverifier, spek

  • #150 Move gradle project from /implementation/scipamato into git root

1.3.1 — 2019-10-15

Changed

  • #119 Core - Truncate Display value for SearchOrder to not have the combobox in the search order panel grow excessively.

  • #138 Added Nullability annotations in code

  • Dependency updates for spring-boot-starter, spring-cloud, spring-cloud-starter, openfeign, jasperreports, font-awesome, equalsverifier, testcontainers, mockito

  • Plugin updates for gradle-lombok-plugin, sonarqube

  • Various technical improvements (#124 - thanks to @jcornaz, #138, #133)

1.3.0 — 2019-09-25

Added

  • #118 Core - Export stuies in RIS format for import into citiation programs

Changed

  • Dependency updates for spring-boot-starter, wicket, wicketstuff, wicket-bootstrap, openfeign, junit, testcontainers, lombok-plugin, jooqmodelator-plugin

Fixed

  • #127 Core - Remove LoadingBehavior where not absolutely necessary

1.2.4 — 2019-08-20

Changed

  • Dependency updates for spring-boot-starter, openfeign, font-awesome, mockito, lombok-plugin, flyway-plugin, gradle-wrapper, jooq

Fixed

  • #109 Core - Restore searching in methods fields (with positive and negative search terms)

1.2.3 — 2019-07-20

Changed

  • Dependency updates for kotlin, junit, lombok-plugin, commons-collections4, font-awesome, gradle-wrapper, mockito, spring-boot-admin

Fixed

  • #105 Core - Restore ability to create new searches with more than 20 saved searches

1.2.2 — 2019-06-26

Changed

  • Bumped version of spring-boot-starter, spring-cloud, openfeign, spring-dependency-management, jasperreports, lombok-plugin

1.2.1 — 2019-06-18

Added

  • #91 Core - complex search enhancement: Method search to include short study fields

Changed

  • Bumped versions of spring-dependency-management, wicket-spring-boot-starter, wicket, wicketstuff, wicket-bootstrap, jasperreports, font-awesome, flyway-plugin, jaxb-plugin

1.2.0 — 2019-05-24

Changed

  • Bumped versions of spring-boot-starter, wicket, wicket-bootstrap, wicket-webjars, jasperreports and -fonts, equalsverifier, spring-boot-admin-starter-client, bootstrap, font-awesome, flyway, lombok-plugin

  • #80 - Migrate from JUnit4 and JUnitParams to JUnit5

  • #82 - Migrating the build system from using maven to gradle

Fixed

  • #69 - Fix Sonar warning: Use project relative paths instead of module relative paths

  • #82 - Fix searching for publication year ranges and for ID

1.1.6 — 2019-03-27

Fixed

  • #70 - Core: Filter Newsletters by newsletter topic - fix query

1.1.5 — 2019-03-22

Changed

  • Bumped version of asm, spring-cloud, jasperreports, commons-collections4, spring-boot-admin-starter-client, equalsverifier, wicket-jquery-ui

Fixed

  • #2 - Core: Using Back button from PaperEntryPage breaks PDF Report generation

  • #73 - Public: Allow starting SciPaMaTo-Public in development profile

  • #12 - Core-Sync: Improve Hikari configuration

1.1.4 — 2019-03-13

Added

  • #70 - Core: Filter Newsletters by newsletter topic

  • Added many wiki pages

  • Test coverage, refactorings and small optimizations behind the scene

Changed

  • #63 - Core: Change layout of new study fields panel in paper edit page - take 2

  • Bumped spring-boot-parent to 2.1.3

Fixed

  • #50 - Public: pym integration into CMS - Fix resizing of the page height after switching to a different new study issue with a shorter or longer list than the most recent one (The issue was fixed in the pym integration in the parent CMS page of SwissTPH by CS2). SciPaMaTo only assisted with issueing log statements on the browser console.

1.1.3 — 2019-02-12

Added

  • #56 - Public: Add help link in Public Filter page pointing to wiki in Github

Changed

  • Bumped wicket to 8.3.0, jacoco-maven-plugin to 0.8.3, wicket-bootstrap to 2.0.7

  • Change java source/target version to java 11

  • #63 - Core: Change layout of new study fields panel in paper edit page

1.1.2 — 2019-01-29

Changed

  • Updated the wiki to better reflect the current state of the project

Fixed

  • #44 - Core & Public: Fix typo in Code '4H' (en): cardovascular → cardiovascular

  • #46 - Sync: Fix exception (NPE) when synchronizing NewStudyTopics from Core to Public

  • #48 - Core: Provide better feedback about the underlying cause if the PubMed API is unable to retrieve an article

  • #51 - Core: Newsletter Edit Page: Issue and Issue Date only enabled for newsletters in status In Progress

  • #52 - Public: Fix direct access to paper detail page via page parameters

1.1.1 — 2019-01-16

Changed

  • #34 - Dependency updates: spring-boot-parent-2.1.2, jaxb-impl, spring-boot-admin-starter-client,equalsverifier, sonar-maven-plugin

Removed

  • #42 - Core: Remove ShortList report and rename ShortList+ to Results

Fixed

  • #36 - Core: Fix spacing in paper summary table PDF to prevent result field to be cut off

  • #38 - Core: Fix Class does not have a visible default constructor in PaperEntryPage

  • #39 - Core: Fix deleting search orders in the SearchOrderPage

1.1.0 — 2018-12-20

Changed

  • #13 - Core: SummaryPDF to show concatenated short fields if main fields methods/population/results are null. Also search by population place in quick search field method.

  • #17 - Core: Let user filter by newsletter. Also enable (and fix) searching by newsletter topic and headline. Also fix auto-saving behavior of the non-tabbed fields in the Search Page.

  • #14 - Migrate from local SonarQube server to SonarCloud

Fixed

  • #16 - Core: Fix editing Search Conditions by not automatically closing the page and triggering the search after having updated a field.

  • Fixed License in POM file to reflecte the change from GPL3 to BSD-3

1.0.5 — 2018-12-03

Changed

  • #9 - Public: Reorder the filter fields in the SimpleFilterPanel

  • Core: PaperEntryPage: Reduce row count of title field to 3

Removed

  • #7 - Core: Remove Validation from PaperEditPage. Message in the Synchronization Page seems to be enough.

Fixed

  • #6 - Core: Extension of the Literature Review PDF Report: Don’t allow pagebreak within study

1.0.4 — 2018-12-02

Added

  • #6 - Core: Extension of the Literature Review PDF Report: Original without the goals field, additional one called Literature Review Plus with the goals field

  • #9 - Public: Offer to search by study title

Changed

  • #5 - Core: Tweak Layout of paper entry page for smaller resolution screens

  • #7 - Sync: Improve Synchronization feedback:

    • Let the entire job fail if one job step fails

    • Provide warn messages for unsynchronized entities (papers with no codes assigned)

  • Updated dependencies: spring-boot, spring-boot-admin-starter-client, equalsverifier

1.0.3 — 2018-11-26

Added

  • Enhanced test coverage

Fixed

  • #3: Core: Fix Exception when importing new paper from PubMed

  • a couple of minor bugs

1.0.2 — 2018-11-26

Added

  • #3: Core: Excluding papers from search from within paper edit page should not jump to the result page

Fixed

  • #4: Core: Navigating from one paper to the next/previous in the paper entry page should keep the focus on the previously selected tab panel.

1.0.1 — 2018-11-21

Added

  • #1: Translate Exception into more user friendly form: DataViolationException when trying to delete code

Changed

  • Bumped version of dependencies: wicket 8.2.0, wicket-spring-boot-starter 2.1.5, wicket-bootstrap 2.0.6

Fixed

  • #2: Error when creating literature review PDF after using the browsers back button (10/15)

1.0.0 — 2018-11-11

Added

  • 09/87: New short field ('Kurzerfassungs-Feld') conclusion. Synched to Public result field. Shown in some reports.

  • 09/05 - Core: Add facilities to manage codes and code classes

Changed

  • Core: Moved Sync Menu into Reference Data Menu

  • Public: Layout tweak in NewStudy list page

  • Bumped dependencies: spring-boot-2.1.0, bval-jsr, spring-boot-admin-starter-client, equalsverifier

  • Simplified dependency management:

    • Remove explicit version overrides for dependencies managed already in spring-boot-super-pom (jOOQ, Flyway, lombok, mockito, assertj, byte-buddy, commons-lang3, jaxb-api, jaxb-runtime, maven-plugins

    • Remove dependency management entry or at least version number for dependencies managed already in spring-boot-super-pom

  • Migration to spring-boot-starter-parent-2.1.0

    • Remove obsolete spring bean overrides

    • Enable spring.main.allow-bean-definition-overriding where requiered (a. in case of overriding beans with test beans (test profile) and b. with spring batch jobRepository (production)

  • Refactored ListPages for Codes, Keywords, Newsletter Topics abstracting common code

  • 09/93 - Public: Limit width of keyword filter field

Fixed

  • 09/84 - Sync: Fix issue with obsolete reference data records in SciPaMaTo-Public not being deleted during sync. Also fixed foreign key constraint violation when trying to sync topics of newsletters that are not published. Fix sync of newsletter related tables based on wrong foreign key constraints

  • 09/86 - Public: Fix padding in public search page

  • 09/88 - Public: Fix typos

0.9.4 — 2018-10-28

Added

  • 09/73 - Core: Add facility to manage the keywords

Changed

  • Bumped dependencies spring-cloud, flyway

  • Slightly improve the newsletter topic maintenance infrastructure (layout, back-button)

Fixed

  • 09/82 - Core: Fix Literaturliste-PDF-Report (include Goals and DOI)

0.9.3 — 2018-10-24

Added

  • 09/10 - Public: Allow filtering by keywords

  • 09/80 - Core: Disable newsletter fields if paper is not assigned to newsletter

Changed

  • Update dependencies spring-boot-parent, flyway, byte-buddy, commons-lang3, mockito, equalsverifier, wicket-jquery-ui, byte-buddy, jaxb-api, jaxb-impl, jaxb-runtime, spring-boot-starter-admin-client

Fixed

  • 09/67 - Core: Remove obsolete newsletter topics from sort list

  • 09/74 - Core: Prevent double clicks on buttons and disable save button until auto-save completed

  • 09/44 - Core: Fix core access for users of type VIEWER

0.9.2 — 2018-10-03

Changed

  • Updated dependencies wicket, wicketstuff, wicket-bootstrap

  • 09/64 - Core: Prepend the first word of the brand to the number label in the edit page

  • 09/63 - Core: Make newPaper button in PaperListPage more distinguishable (Type Primary)

  • 09/57 - Core: Do alert if Original Abstract differs between Pubmed and SciPaMaTo. Normalize line ends before comparing

  • 09/72 - Core: Add newly created paper to head of id list for moving back and forth (after first save)

Fixed

  • Maximum Upload File Size correctly reset to 10M

  • 09/57 - Core: Fix Pubmed import from file for certain html tags in text Not fixed for direct import from pubmed! (new dtd can’t be parsed by jaxb)

  • 09/59 - Core → Public: Make sync more resilient by basing the sync on number instead of id

0.9.1 — 2018-09-17

Added

  • Public: French translation of the PublicPaperDetailPage

  • 09/56 - Core: Access Pubmed using api_key if configured

Changed

  • Bumped dependency versions: spring-boot-starter, jOOQ, mockito, byte-buddy, equalsverifier, sonar-maven-plugin

Fixed

  • 09/43 - Core: Fix caching behavior for user role cache. Fixes internal error after adding user.

  • 09/46 - Core: Improve layout of PaperEntryPage and ResultPanel

  • 09/47 - Core/Public: Fix sort order of papers when paging through the paper detail pages

  • Fixed adding/removing papers from newsletters

0.9.0 — 2018-09-09

Added

  • 09/41 - Public: Include configuration for commercial font IcoMoon

  • 09/43 - Core: Allow users to modify their user record including password

  • 09/43 - Core: Allow admins to manage user accounts and their roles

Changed

  • Bumped wicket-spring-boot-starter, wicket-bootstrap

  • 09/45 - Public: BootstrapMultiselect configurable to switch from 'contains' to 'startsWith/begins' search strategy (wicket-bootstrap-2.0.3)

  • Use LocalDateTextField now bundled with wicket-bootstrap-2.0.3

Fixed

  • 09/49 - Core: Fix Summary Report - reset swapped fields

  • 09/50 - Core: Fix parsing of location of aheadOfPrint Pubmed studies

Security

  • Viewers to access only PaperListPage/PaperEditPage

0.8.9 — 2018-08-30

Added

  • 08/50 - Public: Referential integrity constraints - where possible

  • 08/45 - Core: Manage the Newsletter Topics

  • 08/56: Synchronize languages from core to public

  • 08/56: Implement pseudo-foreign-key-constraint logic for composite keys in SciPaMaTo-Public

  • 08/58 - Core: Added ability to sort the newsletter topics + synchronize to SciPaMaTo-Public

  • 08/61 - Core: Added validator checking for existing records with DOI or PM_ID assigned

  • 08/60 - Public: List of new studies from previous newsletters on NewStudyListPage, as well as a list of links requested for by the customer (maintained in database)

  • 08/65 - Public: Enable zapping through papers of a newsletter from within detail page

Changed

  • Bump dependencies: jOOQ, spring-cloud, assertj, jasperreports, asm, byte-buddy, commons-lang3 maven-compiler-plugin, jacoco-maven-plugin

  • Core: Collapsible Menu entries with submenu items

  • 08/52 - Core: Raise default session timeout from 30 to 60 minutes. Separate cookie names

  • 08/54: When synching from Core to Public: Use Kurzerfassungs-fields if main fields are missing

  • Core → Public: Increased the chunk sizes of some sync jobs

  • 08/62: Enable switching locale of SciPaMaTo-Public from CMS when shown in iframe

Fixed

  • 08/49 - Core: Do not allow two newsletters in status WIP

  • 08/59 - Core: Allow searching for missing years w/ or w/o equal sign (="" or "")

  • Wiki: Implemented review suggestions by Zoë Roth

  • Core to Public Sync: Fix logging of Housekeeper Job

0.8.8 — 2018-08-06

Fixed

  • 08/47: Fix Layout of scipamato page to avoid a cut button in scipamato public when shown in an iframe

0.8.7 — 2018-08-03

Changed

  • Bumped dependencies: spring-boot-starter-parent, jOOQ, Flyway, lombok, jOOL, mockito, equalsverifier, spring-boot-admin, postgres jdbc driver, bytebuddy, commons-collections4

  • Move from org.jooq.jool to org.jooq.jool-java-8

Fixed

  • Fix package name for wicketstuff annotation scan package name

  • Fix commercial font usage: fix filtering of css resources

  • 08/43: Public: Fix loading public paper details by number, e.g. /paper/number/1234

  • Core: Sort Newsletter Topics alphabetically in Paper Editor

0.8.6 — 2018-07-02

Changed

  • Migrated to Java 10, Spring Boot 2.0.3 and Apache Wicket 8.0.0

  • Bump other dependencies: wicket-spring-boot-starter-parent, wicket-bootstrap, jOOQ, flyway, mockito,spring-boot-starter-admin

  • Improved the javadoc: warnings eliminated, javadoc for classes generated by jOOQ and jaxb skipped

  • Optimizd confguration of maven-resource-plugin

  • Avoided printing stack-trace to the log in case of missing network for Pubmed access

  • Explicit data source configuration in core web module

  • Renamed ScipamatoApplication to ScipamatoCoreApplication

Fixed

  • Renamed UserDetailService to UserDetailsService

  • Have spring batch use the batchDataSource

0.8.5 — 2018-06-15

Added

  • 08/08 - Core: Add/Maintain Newsletter. Assign/remove papers to/from newsletter. Search by newsletter attributes

  • 08/22 - Public: Added referential integrity constraints between codes and code_classes

  • 08/35 - Core/Public: New Studies: Manage newsletters in Core, assign papers with topics. Syncronize to Public (new studies)

Changed

  • 08/23 - Core: Re-extracted scipamato-core-logic that is needed for the migration tool (not part of the open-source aspect of scipamato)

  • Bump dependencies: Spring Boot starter, jOOQ, lombok, flyway, jasperreports, mockito, assertj, equalsverifier, jacoco-maven-plugin

  • 08/36 - Public: Open paper detail page from new-study page in separate browser tab

Fixed

  • JooqReadOnlyRepo implementations use the record to entity mappers also for the find methods

0.8.4 — 2018-04-18

Changed

  • Upgraded dependencies: spring-boot-parent

  • Switched from Eclipse to IntelliJ IDEA as IDE. Fixed many issues warned about by the IDE

Fixed

  • 08/12 - Core: Fix startup of SciPaMaTo-Core (introduced in 0.7.3 - commit be8407bfbb4572ef6f3fdddaf024ab0116e7e07b)

  • 08/24 - Public: Fix sorting of result table

0.8.3 — 2018-04-06

Changed

  • dependency bumps: wicket-spring-boot, jOOQ, PostgreSQL JDBC Driver, spring-cloud

  • 08/20 - Public: reduce columns/column sizes in result view (abbreviated authors, journal instead of location)

  • 08/12 - Public: Add pym.js to support loading SciPaMaTo-Public within a responsive iframe

  • 08/21 - Public: Styling of NewStudy page

0.8.2 — 2018-03-15

Fixed

  • 08/17 - Public: Fix Internal Error when opening papers with Numbers that don’t exist as IDs

  • 08/18 - Public: Link from NewStudyPage to PublicPage opens in new browser tab

0.8.1 — 2018-03-14

Changed

  • 07/65 - Public: Searching with PubYearFrom w/o PubYearUntil only finds papers with the exact PubYear (not anymore PubYear >= PubYearFrom). PubYearUntil w/ empty PubYearFrom still finds papers with PubYear ⇐ PubYearUntil

  • Wiki Updates (Public Filtering)

Fixed

  • 07/62 - Public: Adjust the german label/title for clearing the search on PublicPaperPage

  • 07/66 - Public: Fix jumping back from DetailPage to NewStudy Page if called from there

  • 08/16 - Wicket-Filestore issue probably due to same location for core and public

0.8.0 — 2018-03-13

Added

  • 08/13 - Public: Add page with new study (with stubbed data for now)

Changed

  • Dependency updates: wicket-bootstrap

0.7.7 — 2018-03-09

Added

  • 07/62 - Public: New Button to clear the search criteria

Changed

  • 07/41 - Public: Increase base font size from 13 px to 15 px

  • 07/56 - Public: Repeat the simple search fields in Extended Search

  • 07/64 - Public: Provide possibility to quote text search terms (e.g. authors)

Removed

  • 07/04 - Public: Remove ability to search by id/number

0.7.6 — 2018-03-07

Added

  • Added customized sonar quality profile used for SciPaMaTo

  • Added customized look and feel for scipamato-public based on todc-bootstrap. With optional MetaOT-Font which is commercial

Changed

  • Updated screenshots sonar + architecture

  • Updated dependencies: wicket, jOOQ, flyway, mockito, spring-cloud, equalsverifier, assertJ

  • Improved some topics according to Effective Java, 3rd edition

  • Navbar in SciPaMaTo-Public: Do not show by default. Can be overridden via page parameter showNavbar. Default state is configurable via property scipamato.navbar-visible-by-default

  • Navbar: Do not fix it to top (Position.STATIC-TOP)

  • Page Title: use brand instead of hardcoding it

Fixed

  • Amend sonar quality profile and fix some issues highlighted by sonar (mostly serializable related)

0.7.5 — 2018-02-05

Added

  • Added structure101 configuration to project both for studio and workspace

Changed

  • architectural refactorings to remove dependency cycles (tangles) both on class and package level

  • keep generated pubmed-api classes strictly within scipamato-core-pubmed-api

  • have infinitest ignore integration tests

  • renamed public packages from ch.difty.scipamato.public_ to ch.difty.scipamato.publ

  • updated spring-boot-starter-parent, postgresql jdbc driver, spring-boot-admin

Removed

0.7.4 — 2018-01-19

Changed

  • Updated jOOQ, jasperreports, spring-cloud, flyway

  • 07/47: Correctly add the maven wrapper

Fixed

  • Fixed logging configuration to not write into /tmp

0.7.3 — 2018-01-14

Added

  • Test Coverage of untested parts of SciPaMaTo

Changed

  • Switched from GPLv3 to BSD3 license

  • CodeStyle: Adjusted code style based on review by Prof. Dierk König. Added Eclipse formatter to project.

  • Integrated classes of scipamato-common-config and scipamato-core-logic into other modules to (slightly) reduce number of maven modules. Based on review by Prof. Dierk König.

  • Renamed DefaultAuthorParser to PubmedAuthorParser

  • Improved JavaDoc for author strings, highlighted dependency on author parser strategy and current limitation with JSR303 validation of author strings.

  • Updated jOOQ, flyway, lombok, jasperreports, assertJ, jacoco-maven-plugin

  • Switched to mockito-2

Fixed

  • AuthorParser: Don’t let streams escape their context. Based on review by Prof. Dierk König.

  • Do not run the data synchronization from core to public during the nightly build (profile-sonar)

  • A few minor so far non-surfacing bugs showing up when working on the test-coverage :-)

  • A few imprecise repo methods that started failing with lombok-1.16.20

0.7.2 — 2017-12-22

Changed

  • 07/44: Use @ConfigurationProperties to define custom properties

  • Version bump: spring-boot-admin-starter-client

Fixed

  • Explicitly manage the bootstrap version (3.3.7-1) that was overridden by spring-cloud-dependencies to 3.2.0

Security

  • Public 07/43: https configuration. Allow referencing SciPaMaTo-Public from iframe. Redirect from http

0.7.1 — 2017-12-13

Added

  • QuickStart guide Wiki page

Changed

  • Improved DeveloperInformation and Operations Wiki pages

  • Improved DataSource/HikariCP configuration and added tests

  • Switched to implicit constructor injection as of spring 4.3

Fixed

  • 07/30: Do not synchronize null int/long columns as 0 (PublicationYear, PM_ID...)

  • 07/25: Code-Synchronization: Don’t synchronize internals, aggregate 5A/B/C to 5abc

0.7.0 — 2017-12-09

Added

  • Public: 07/01: Add table paper and two sample records. Simple filter in public GUI to retrieve and display the data from database.

  • Public: 07/03: Allow to filter by collective code groups Population (Children vs. Adults) and/or StudyType (Experimental, Epidemiological or Methodology)

  • Public: 07/04: Searching by paper number

  • Public: 07/05: Detail Page when clicking on the title of a paper in the overview list (same fields as Summary PDF)

  • Public: 07/09: External link in detail view pointing to the PubMed site of the related paper

  • Public: 07/14: Rest-like URL using the paper number with bookmarkable links (e.g. http://localhost:8081/paper/number/2) that can be used e.g. in newsletters

  • Public: 07/24: Allow filtering by Codes

  • 07/13: Synchronize Papers, Codes and CodeClasses from SciPaMaTo-Core to SciPaMaTo-Public

Changed

  • Core: 06/21+24: Open external links (to the ChangeLog or wiki pages) in new browser tab

  • Story 07/01: New maven modules scipamato-common-entity, scipamato-common-persistence-api, scipamato-common-persistence-jooq

  • Documentation updates

  • pom refactoring and cleanup

  • Small refactorings and improvements

  • Version bump: spring-boot-parent, jOOQ, Flyway, commons-lang3, equalsverifier, sonar-maven-plugin

  • The link to the change log points to the current version directly

ℹ️
 Switching to flyway 5.x brings with it a rename of the flyway meta table (from schema_version to flyway_schema_history). While current versions of flyway can deal with the old table name, this fallback will be dropped in flyway 6.x. I recommend you to manually rename the table in your database instances (alter table schema_version rename to flyway_schema_history;).
Removed

  • obsolete jOOQ configuration classes. Simplified jOOQ configuration based on spring boot auto-configuration

Fixed

  • Fixed and improved transaction handling in integration tests

  • 07/20: Do not automatically run AdHocTests (PubmedXmlServiceIntegrationAdHocTest accessing PubMed over the internet)

Security

  • Public: 07/16: Add spring-security to SciPaMaTo-Public: Anonymous login for the page, required login for actuator endpoints

0.6.3 — 2017-11-06

Changed

  • Updated jaxb-api, jasper-reports, spring-cloud-starter-feign, assertJ, JUnitParams

  • pom refactoring

Fixed

  • Bug 06/22: Fixes the exception we had after clicking on a freshly imported pubmed paper.

  • Bug 06/23: Include new format for collective authors in the author validation.

  • Bug 06/27: Fix layout issues with XmlPasteModal panel (Caption, initial size)

  • Bug 06/27: When the XMlPasteModal was opened and closed, it could not be opened again without page refresh

0.6.2 — 2017-11-01

Added

  • new maven modules scipamato-wicket and scipamato-public with minimal functionality

  • Feature 06/21: Add Menu Link to the github wiki page (Help)

  • Feature 06/24: Add Menu Link with build version number pointing to the CHANGELOG document on github

Changed

  • Improved documentation and code coverage

  • Updated to spring-boot-1.5.8, wicket-7.9.0, bumped wicket-spring-boot-starter, jOOQ-3.10.1, feign

Fixed

  • Fix version alignment between different modules for jOOQ and the postgresql jdbc driver

  • Selective improvements with Eclipse Clean-up functionality

  • Bug 06/23: Parsing Authors from PubmedXml: Delimiter between normal authors and authors with CollectiveName needs to be semicolon.

  • Bug 06/22: PaperListPage: Refresh ResultPanel after having imported via XML from PubMed to immediately show the updated paper list.

0.6.1 — 2017-09-20

Added

  • 6/12: enable caching (ehcache3) for static reference data

Changed

  • 6/17: Transformed the project to a maven multi-module project, allowing to reuse author parsing in the data migration project

  • pom cleanup

  • Introduced Project Lombok for Getters/Setters, Equals/HashCode and Builders

  • Rebased the database creation scripts. Now not adding papers or searches anymore, only reference data

  • switched from markdown to asciidoc for wiki pages

  • Created ChangeLog according to Keep a Changelog

  • use OktHttp with feign

  • various improvements in wiki pages, javadoc, sonar suggested code changes

  • dependency updates: spring-boot-starter, wicket, wicket-spring-boot-starter, jOOQ, postgres-jdbc-driver, spring-boot-admin, assertJ

  • Spring batch project for the migration of the legacy data into SciPaMaTo (separate project)

Fixed

  • 6/13: Fix behavior when accessing PubMed without network access

  • 6/11: Codes/CodeClasses were not translated according to browser locale

  • fix jooq-codegen-maven-plugin after having flyway populate an empty db

  • minor architectural improvements (remove dependencies across layers)

  • Wiki: Fix description of string searches

  • Fixed First Author Parsing from Author string in case of Junior (Jr) after initials

0.6.0 — 2017-07-17

Added

  • 6/7: Drag and drop import of PubmedXML (using DropZoneUpload)

Changed

  • improvements in wiki pages, raised test coverage

  • dependency updates (jasperreports)

Fixed

  • 6/6: fix upload for attachments > 1MB (now limited to 10MB)

0.5.6 — 2017-07-03

Added

  • 5/26: Optimistic locking

Fixed

  • 5/41: fix internal error when clicking save

0.5.5 — 2017-07-02

Added

  • 5/38: Short Summary PDF (Kurzerfassung)

Changed

  • using undertow instead of tomcat

  • Replace AjaxTimerBehavior with SelfUpdateEvent behavior for id, created, modified

  • Use the number instead of (DB) id in the names of the pdf files

  • several updates in wiki pages, javadoc, sonar code improvements

0.5.4 — 2017-06-28

Added

  • 5/36: Improved exclusion handling (exclude/re-include directly out of paper. Icon)

Changed

  • 5/37: do not switch the label when toggling searchExclusion checkbox

  • 5/30: Visual appearance of navigation buttons

  • wiki page updates

  • dependency update: spring-boot-admin

Fixed

  • 5/35: Validator for codeclass1 should not trigger in search mode

0.5.3 — 2017-06-25

Added

  • 5/9: Adding attachments to papers

Changed

  • wiki page updates, sonar code improvements

Fixed

  • Codes were not loaded properly when loading papers by number or pmid

  • LinkIconPanel fix

0.5.2 — 2017-06-19

Added

  • 5/30: Allow excluding papers from PaperEntryPage

  • 5/31: Jump back from PaperEntryPage to either PaperListPage or PaperSearchPage, depending from where we called the page

Changed

  • wiki page updates, javadoc fixes, German translation updates, sonar code improvements

  • dependency update: wicket-bootstrap

Fixed

  • 5/29: Search exclusions were not saved in searches

  • Layout fixes

0.5.1 — 2017-06-15

Added

  • 5/28: Navigation through the different papers in the search result

Changed

  • wiki page updates, javadoc fixes

  • dependency updates: spring-boot-starter, spring-boot-admin, spring-cloud-starter-feign

Fixed

  • NPE with Pubmed retrieval with null PMID

0.5.0 — 2017-06-09

Added

  • added spring-boot-admin-starter-client

Changed

  • dependency updates: wicket, wicket-bootstrap

Removed

  • 5/21: Dropped H2 support → sticking with PostgreSQL only for now

0.4.5 — 2017-06-01

Changed

  • dependency updates: postgres-jdbc, jOOQ, flyway, feign-jaxb, JUnitParams, jaxb2-maven-plugin

  • wiki page updates, javadoc improvements

  • minor refactorings

Fixed

  • Fix keeping the different 'new field' instances synchronized in the web page

0.4.4 — 2017-05-11

Changed

  • Test release from jenkins

0.4.3 — 2017-05-11

Added

  • Releasing the project with the jenkins release job

0.4.2 — 2017-05-10

Added

  • new business id (Number), which is different from the sequence backed database id

  • Import data from pubmed with only the PmID entered

  • Paper Entry Page: Separate tab for 'new fields'

  • Make the PostgreSQL backend the first class member while currently still supporting the H2 backend (supporting the prototyping, not for support.)

  • Flyway for database migrations

Changed

  • dependency updates

  • wiki page updates

Deprecated

  • H2 support

Removed

  • Removed dummy home page

  • Removed spring-data

0.4.1 — 2017-03-11

Added

  • Added License: GPLv3

Changed

  • refactorings and code cleanup

  • wiki page updates

0.4.0 — 2017-02-23

Added

  • First shot at parsing, importing from and comparing SiPaMaTo content with PubMed articles based on PMID. Working with Pubmed XML file exports. Direct API call to PubMed in order to compare common fields.

Changed

  • sonar code improvements

  • improved test coverage

0.3.5 — 2017-02-08

Added

  • Searching by created/last modified

  • Manage SciPaMaTo with Jenkins CI

Changed

  • Replace AutoSaveBehavior with direct ajax saves

  • wiki page updates

Fixed

  • small bug fixes

0.3.4 — 2017-02-01

Changed

  • Implemented various feed-back items from users

  • git commit-id-plugin to show repo information in actuator

  • wiki page updates, javadoc updates

  • dependency updates: spring-boot-starter-parent

0.3.3 — 2017-01-29

Added

  • additional PDF reports

Fixed

  • small fixes

0.3.2 — 2017-01-25

Added

  • PDF reports

  • additional test data

Changed

  • Do not set the publication year in new papers

  • maintain users in the database

  • wiki page updates, layout improvements

  • dependency updates: wicketstuff-annotation, wicket-spring-boot-starter,jOOQ

Fixed

  • fix paging the papers in the list view

  • Layout/translation fixes based on user feedback

0.3.1 — 2017-01-06

Added

  • new field for paper: 'original abstract'

Fixed

  • Fix search term evaluation

0.3.0 — 2017-01-06

Added

  • Show a papers creator/last modifying user

Changed

  • layout adjustments in paper entry page

  • wiki page updates

  • dependency updates: spring-boot-starter, jOOQ, wicket

0.2.0 — 2016-12-15

Added

  • Complex search capability

  • Exclude papers found in searches

  • refactor and cleanup

  • small bug fixes

  • dependency updates

[0.1.0] — 2016-11-05

Added

  • bootstrap the whole project

  • list, show and edit papers