You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
In the latest Mapman 4 ontology there are 27 root bins - plus two not manually curated ones.
The latter are Bin 50 and Bin 35.
It would be nice to have a new plot, that is a collection of 27 horizontal boxplots.
Each boxplot shows the distribution of numerical values selected from the info table for transcripts having the respective
root Mapman Bin.
Input form - takes inspiration from the input form of the enrichment analysis:
Enable to select an info_table column for the numerical values that go into the boxplots, e.g. log-fold-change between control and cold stress treatment.
Enable to select the column that holds the Mapman Bin identifiers and a separator char (like in the enrichment analysis). Use default.
Enable to specify a list of transcript (gene) identifiers to subset. This can be either entered manually (one Gene ID per line) or by a selector. Again like in enrichment analysis.
Plot:
see screenshot for a crude example
Replace BINCODE with NAME
Put the number of genes annotated with a root bin next to the y-axis labels
note that "value" is log-fold-change of S. lycopersicum control versus cold stress treatment in this case
The text was updated successfully, but these errors were encountered:
In the latest Mapman 4 ontology there are 27 root bins - plus two not manually curated ones.
The latter are Bin 50 and Bin 35.
It would be nice to have a new plot, that is a collection of 27 horizontal boxplots.
Each boxplot shows the distribution of numerical values selected from the info table for transcripts having the respective
root Mapman Bin.
Input form - takes inspiration from the input form of the enrichment analysis:
Enable to select an info_table column for the numerical values that go into the boxplots, e.g. log-fold-change between control and cold stress treatment.
Enable to select the column that holds the Mapman Bin identifiers and a separator char (like in the enrichment analysis). Use default.
Enable to specify a list of transcript (gene) identifiers to subset. This can be either entered manually (one Gene ID per line) or by a selector. Again like in enrichment analysis.
Plot:
The text was updated successfully, but these errors were encountered: