Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add an Mapman overview plot #171

Open
asishallab opened this issue Feb 15, 2022 · 0 comments
Open

Add an Mapman overview plot #171

asishallab opened this issue Feb 15, 2022 · 0 comments
Assignees
Labels
feature New feature or request

Comments

@asishallab
Copy link
Collaborator

In the latest Mapman 4 ontology there are 27 root bins - plus two not manually curated ones.
The latter are Bin 50 and Bin 35.

It would be nice to have a new plot, that is a collection of 27 horizontal boxplots.
Each boxplot shows the distribution of numerical values selected from the info table for transcripts having the respective
root Mapman Bin.

Input form - takes inspiration from the input form of the enrichment analysis:
Enable to select an info_table column for the numerical values that go into the boxplots, e.g. log-fold-change between control and cold stress treatment.
Enable to select the column that holds the Mapman Bin identifiers and a separator char (like in the enrichment analysis). Use default.
Enable to specify a list of transcript (gene) identifiers to subset. This can be either entered manually (one Gene ID per line) or by a selector. Again like in enrichment analysis.

Plot:

  • see screenshot for a crude example
  • Replace BINCODE with NAME
  • Put the number of genes annotated with a root bin next to the y-axis labels
  • note that "value" is log-fold-change of S. lycopersicum control versus cold stress treatment in this case

image

@asishallab asishallab added the feature New feature or request label Feb 15, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
feature New feature or request
Projects
None yet
Development

No branches or pull requests

4 participants