GithubScraper.ipynb

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      "/home/manny/anaconda3/lib/python3.6/importlib/_bootstrap.py:219: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility. Expected 96, got 88\n",
      "  return f(*args, **kwds)\n",
      "/home/manny/anaconda3/lib/python3.6/importlib/_bootstrap.py:219: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility. Expected 96, got 88\n",
      "  return f(*args, **kwds)\n",
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      "Index(['commitId', 'project', 'comment', 'label',\n",
      "       'ADDING_ATTRIBUTE_MODIFIABILITY', 'ADDING_CLASS_DERIVABILITY',\n",
      "       'ADDING_METHOD_OVERRIDABILITY', 'ADDITIONAL_CLASS',\n",
      "       'ADDITIONAL_FUNCTIONALITY', 'ADDITIONAL_OBJECT_STATE',\n",
      "       'ALTERNATIVE_PART_DELETE', 'ALTERNATIVE_PART_INSERT',\n",
      "       'ATTRIBUTE_RENAMING', 'ATTRIBUTE_TYPE_CHANGE', 'CLASS_RENAMING',\n",
      "       'COMMENT_DELETE', 'COMMENT_INSERT', 'COMMENT_MOVE', 'COMMENT_UPDATE',\n",
      "       'CONDITION_EXPRESSION_CHANGE', 'DECREASING_ACCESSIBILITY_CHANGE',\n",
      "       'DOC_DELETE', 'DOC_INSERT', 'DOC_UPDATE',\n",
      "       'INCREASING_ACCESSIBILITY_CHANGE', 'METHOD_RENAMING',\n",
      "       'PARAMETER_DELETE', 'PARAMETER_INSERT', 'PARAMETER_ORDERING_CHANGE',\n",
      "       'PARAMETER_RENAMING', 'PARAMETER_TYPE_CHANGE', 'PARENT_CLASS_CHANGE',\n",
      "       'PARENT_CLASS_DELETE', 'PARENT_CLASS_INSERT', 'PARENT_INTERFACE_CHANGE',\n",
      "       'PARENT_INTERFACE_DELETE', 'PARENT_INTERFACE_INSERT', 'REMOVED_CLASS',\n",
      "       'REMOVED_FUNCTIONALITY', 'REMOVED_OBJECT_STATE',\n",
      "       'REMOVING_ATTRIBUTE_MODIFIABILITY', 'REMOVING_CLASS_DERIVABILITY',\n",
      "       'REMOVING_METHOD_OVERRIDABILITY', 'RETURN_TYPE_CHANGE',\n",
      "       'RETURN_TYPE_DELETE', 'RETURN_TYPE_INSERT', 'STATEMENT_DELETE',\n",
      "       'STATEMENT_INSERT', 'STATEMENT_ORDERING_CHANGE',\n",
      "       'STATEMENT_PARENT_CHANGE', 'STATEMENT_UPDATE', 'UNCLASSIFIED_CHANGE',\n",
      "       'add', 'allow', 'bug', 'chang', 'error', 'fail', 'fix', 'implement',\n",
      "       'improv', 'issu', 'method', 'new', 'npe', 'refactor', 'remov', 'report',\n",
      "       'set', 'support', 'test', 'use'],\n",
      "      dtype='object')\n"
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   ],
   "source": [
    "import os\n",
    "import re\n",
    "from glob import glob\n",
    "from tqdm import tqdm\n",
    "import javalang\n",
    "import pandas as pd\n",
    "import time\n",
    "from requests.exceptions import SSLError\n",
    "def rate_limited():\n",
    "        print(\"Connection Error: maybe rate limited, waiting 1 minute\")\n",
    "        time.sleep(60)\n",
    "\n",
    "def get_source_code(commitId, project):\n",
    "    import random\n",
    "    import requests\n",
    "    from robobrowser import RoboBrowser\n",
    "\n",
    "    HEADERS_LIST = [\n",
    "        'Mozilla/5.0 (Windows; U; Windows NT 6.1; x64; fr; rv:1.9.2.13) Gecko/20101203 Firebird/3.6.13',\n",
    "        'Mozilla/5.0 (compatible, MSIE 11, Windows NT 6.3; Trident/7.0; rv:11.0) like Gecko',\n",
    "        'Mozilla/5.0 (Windows; U; Windows NT 6.1; rv:2.2) Gecko/20110201',\n",
    "        'Opera/9.80 (X11; Linux i686; Ubuntu/14.10) Presto/2.12.388 Version/12.16',\n",
    "        'Mozilla/5.0 (Windows NT 5.2; RW; rv:7.0a1) Gecko/20091211 SeaMonkey/9.23a1pre'\n",
    "    ]\n",
    "\n",
    "    link = []\n",
    "    codes = []\n",
    "\n",
    "    retries = 0\n",
    "    \n",
    "    \n",
    "    while(len(codes)<1):\n",
    "     #   if retries > 1:\n",
    "          #  print(\"Retrying\", retries, \"/ 4\")\n",
    "        if retries > 3:\n",
    "            print(commitId, project)\n",
    "            break\n",
    "        session = requests.Session()\n",
    "        browser = RoboBrowser(session=session, user_agent=random.choice(HEADERS_LIST), parser=\"lxml\")\n",
    "        url = \"https://github.com/\" + project.replace(\"-\", \"/\") + \"/commit/\" + commitId\n",
    "\n",
    "        try:\n",
    "            browser.open(url + \"?diff=unified\")\n",
    "        except SSLError:\n",
    "            rate_limited()\n",
    "            pass\n",
    "        results = browser.find_all(\"a\")\n",
    "        for item in results:\n",
    "            if item.string is not None:\n",
    "                if \".java\" in item.string:\n",
    "                    try:\n",
    "                     #   print(item.string, project, commitId)\n",
    "                        second_url = \"https://raw.githubusercontent.com/\" + project.replace(\"-\", \"/\") + \"/\" + commitId + \"/\" + item.string\n",
    "                        browser.open(second_url)\n",
    "                        codes.append(browser.find().text)\n",
    "                    except (SSLError):\n",
    "                        rate_limited()\n",
    "                        pass\n",
    "\n",
    "        retries = retries + 1\n",
    "\n",
    "    return codes\n",
    "    \n",
    "\n",
    "\n",
    "\n",
    "def removeComments(string):\n",
    "    string = re.sub(re.compile(\"/\\*.*?\\*/\", re.DOTALL), \"\",\n",
    "                    string)  # remove all occurance streamed comments (/*COMMENT */) from string\n",
    "    string = re.sub(re.compile(\"//.*?\\n\"), \"\",\n",
    "                    string)  # remove all occurance singleline comments (//COMMENT\\n ) from string\n",
    "    return string\n",
    "\n",
    "\n",
    "temp_subfiles = []\n",
    "\n",
    "pattern = \"*.java\"\n",
    "\n",
    "for dir, _, _ in os.walk(\"/home/manny/PycharmProjects/GithubScraper/java_code_files\"):\n",
    "    temp_subfiles.extend(glob(os.path.join(dir, pattern)))\n",
    "\n",
    "\n",
    "df = pd.read_csv(\"1151-commits-labeled-with-maintenance-activities.csv\", sep=\"#\")\n",
    "\n",
    "code = {\"JavaSyntaxError\":[],\"code_col\" :[],\"code_line\" :[],\"code\" : [],\"astcode\": [], \"label\": [], \"repoSource\": [], 'add': [], 'allow': [], 'bug': [], 'chang': [], 'error': [],\n",
    "        'fail': [], 'fix': [], 'implement': [],\n",
    "        'improv': [], 'issu': [], 'method': [], 'new': [], 'npe': [], 'refactor': [], 'remov': [], 'report': [],\n",
    "        'set': [], 'support': [], 'test': [], 'use': [],'database_source':[]}\n",
    "\n",
    "print(df.columns)\n",
    "\n",
    "def dict_append(code, key, value):\n",
    "    if value == None:\n",
    "        code[key].append(\"nan\")\n",
    "    else:\n",
    "        code[key].append(\"value\")\n",
    "        return \n",
    "\n",
    "for index, row in tqdm(df.iterrows()):\n",
    "    source_codes = get_source_code(row['commitId'], row['project'])\n",
    "    for source_code in source_codes:\n",
    "        try:\n",
    "            tree = javalang.parse.parse(source_code)\n",
    "            for codeblock in tree.children:\n",
    "                try:\n",
    "                    code['code'].append(codeblock._position._source)\n",
    "                except AttributeError:\n",
    "                    code['code'].append(None)\n",
    "                try:\n",
    "                    code['code_line'].append(codeblock._position.line)\n",
    "                except AttributeError:\n",
    "                    code['code_line'].append(None)\n",
    "                try:\n",
    "                    code['code_col'].append(codeblock._position.column)\n",
    "                except AttributeError:\n",
    "                    code['code_col'].append(None)\n",
    "\n",
    "                code['astcode'].append(codeblock)\n",
    "                code['label'].append(row['label'])\n",
    "                code['repoSource'].append(row['project'])\n",
    "                code['add'].append(row['add'])\n",
    "                code['allow'].append(row['allow'])\n",
    "                code['bug'].append(row['bug'])\n",
    "                code['chang'].append(row['chang'])\n",
    "                code['error'].append(row['error'])\n",
    "                code['fail'].append(row['fail'])\n",
    "                code['fix'].append(row['fix'])\n",
    "                code['implement'].append(row['implement'])\n",
    "                code['improv'].append(row['improv'])\n",
    "                code['issu'].append(row['issu'])\n",
    "                code['method'].append(row['method'])\n",
    "                code['new'].append(row['new'])\n",
    "                code['npe'].append(row['npe'])\n",
    "                code['refactor'].append(row['refactor'])\n",
    "                code['remov'].append(row['remov'])\n",
    "                code['report'].append(row['report'])\n",
    "                code['set'].append(row['set'])\n",
    "                code['support'].append(row['support'])\n",
    "                code['test'].append(row['test'])\n",
    "                code['use'].append(row['use'])\n",
    "                code['database_source'].append(\"Promise\")\n",
    "                code['JavaSyntaxError'].append(False)\n",
    "        except (javalang.parser.JavaSyntaxError, KeyError):\n",
    "                code['code'].append(source_code)\n",
    "                code['astcode'].append(None)\n",
    "                code['code_line'].append(None)\n",
    "                code['code_col'].append(None)\n",
    "                code['JavaSyntaxError'].append(True)\n",
    "                code['label'].append(row['label'])\n",
    "                code['repoSource'].append(row['project'])\n",
    "                code['add'].append(row['add'])\n",
    "                code['allow'].append(row['allow'])\n",
    "                code['bug'].append(row['bug'])\n",
    "                code['chang'].append(row['chang'])\n",
    "                code['error'].append(row['error'])\n",
    "                code['fail'].append(row['fail'])\n",
    "                code['fix'].append(row['fix'])\n",
    "                code['implement'].append(row['implement'])\n",
    "                code['improv'].append(row['improv'])\n",
    "                code['issu'].append(row['issu'])\n",
    "                code['method'].append(row['method'])\n",
    "                code['new'].append(row['new'])\n",
    "                code['npe'].append(row['npe'])\n",
    "                code['refactor'].append(row['refactor'])\n",
    "                code['remov'].append(row['remov'])\n",
    "                code['report'].append(row['report'])\n",
    "                code['set'].append(row['set'])\n",
    "                code['support'].append(row['support'])\n",
    "                code['test'].append(row['test'])\n",
    "                code['use'].append(row['use'])\n",
    "                code['database_source'].append(\"Promise\")\n",
    "                pass\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "print(code)\n",
    "for key,value code.items():\n",
    "    print(key, str(len(code[key])))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "pd.DataFrame.from_dict(code)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "print(code)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
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