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I'm running a tadtool command as : tadtool plot lvan_20000.matrix lvan_20000_abs.bed LG14:9000000-10000000 -w window.txt -m 2000000
But it reported error as :
2024-04-23 15:51:07,526 INFO Loading regions...
2024-04-23 15:51:08,061 INFO Checking plotting region in matrix...
2024-04-23 15:51:08,072 INFO Loading matrix...
2024-04-23 15:56:47,498 INFO Getting window sizes...
Traceback (most recent call last):
File "/home/wang_group/.local/bin/tadtool", line 448, in <module>
TADtool()
File "/home/wang_group/.local/bin/tadtool", line 44, in __init__
getattr(self, args.command)()
File "/home/wang_group/.local/bin/tadtool", line 163, in plot
window_sizes = np.load(args.window_sizes[0])
File "/usr/local/lib/python3.6/dist-packages/numpy/lib/npyio.py", line 444, in load
raise ValueError("Cannot load file containing pickled data "
ValueError: Cannot load file containing pickled data when allow_pickle=False
Is my window.txt file in a wrong format? The default window size calculated by the tool is 100K, which is too large for me, I'd like it to be 20k or more little.
The text was updated successfully, but these errors were encountered:
I'm running a tadtool command as :
tadtool plot lvan_20000.matrix lvan_20000_abs.bed LG14:9000000-10000000 -w window.txt -m 2000000
But it reported error as :
My window.txt file is as :
Is my window.txt file in a wrong format? The default window size calculated by the tool is 100K, which is too large for me, I'd like it to be 20k or more little.
The text was updated successfully, but these errors were encountered: