From d5fcc60ccfc7cf8baac3bdb1eb861bc54e7e9840 Mon Sep 17 00:00:00 2001 From: Leila011 Date: Wed, 7 Aug 2024 10:32:56 +0200 Subject: [PATCH 01/15] add help --- .../agat_sp_compare_two_annotations/help.txt | 86 +++++++++++++++++++ 1 file changed, 86 insertions(+) create mode 100644 src/agat/agat_sp_compare_two_annotations/help.txt diff --git a/src/agat/agat_sp_compare_two_annotations/help.txt b/src/agat/agat_sp_compare_two_annotations/help.txt new file mode 100644 index 00000000..e02deebe --- /dev/null +++ b/src/agat/agat_sp_compare_two_annotations/help.txt @@ -0,0 +1,86 @@ +```sh +agat_sp_compare_two_annotations.pl --help +``` + + ------------------------------------------------------------------------------ +| Another GFF Analysis Toolkit (AGAT) - Version: v1.4.0 | +| https://github.com/NBISweden/AGAT | +| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se | + ------------------------------------------------------------------------------ + + +Name: + agat_sp_compare_two_annotations.pl + +Description: + The script aims to compare two annotation of the same assembly. It + provided information about split/fusion of genes between the two + annotations. The most common cases are: 1 => 0 ( gene uniq to file1) 0 + => 1 ( gene uniq to file2) 1 => 1 ( 1 gene from file 1 overlaps only 1 + gene from file2) 1 => ( 1 gene from file 1 overlaps genes + from file2) => split case (with file 1 as reference) => 1 ( + genes from file 1 overlap only 1 gene from file2) => fusion case + (with file 1 as reference) + + Then you can get more complex cases: => ( genes from + file 1 overlap genes from file2) + + The script output a folder containing a report of number of different + cases as well as a file per case type listing per line the gene + feature's ID involved in each case. + +Usage: + agat_sp_compare_two_annotations.pl -gff1 infile.gff [ -o outfile ] + agat_sp_compare_two_annotations.pl --help + +Options: + -gff1 Input GTF/GFF file1. + + -gff2 Input GTF/GFF file2. + + -o , --output or --out + Output folder. It contains a report that resume the type and + number of cases, as well as a file per case type containing one + case per line with the list of gene feature's ID (or other type + of feature level1) from file1 then file2 separated by a |. + + --debug or -d + Debug option, make it easier to follow what is going on for + debugging purpose. + + --verbose or -v + Verbose option, make it easier to follow what is going on. + + -c or --config + String - Input agat config file. By default AGAT takes as input + agat_config.yaml file from the working directory if any, + otherwise it takes the orignal agat_config.yaml shipped with + AGAT. To get the agat_config.yaml locally type: "agat config + --expose". The --config option gives you the possibility to use + your own AGAT config file (located elsewhere or named + differently). + + -h or --help + Display this helpful text. + +Feedback: + Did you find a bug?: + Do not hesitate to report bugs to help us keep track of the bugs and + their resolution. Please use the GitHub issue tracking system available + at this address: + + https://github.com/NBISweden/AGAT/issues + + Ensure that the bug was not already reported by searching under Issues. + If you're unable to find an (open) issue addressing the problem, open a new one. + Try as much as possible to include in the issue when relevant: + - a clear description, + - as much relevant information as possible, + - the command used, + - a data sample, + - an explanation of the expected behaviour that is not occurring. + + Do you want to contribute?: + You are very welcome, visit this address for the Contributing + guidelines: + https://github.com/NBISweden/AGAT/blob/master/CONTRIBUTING.md \ No newline at end of file From 14fff016f5406fe0e81c8df89384a2888aa87f65 Mon Sep 17 00:00:00 2001 From: Leila011 Date: Wed, 7 Aug 2024 10:38:22 +0200 Subject: [PATCH 02/15] add config --- .../config.vsh.yaml | 97 +++++++++++++++++++ 1 file changed, 97 insertions(+) create mode 100644 src/agat/agat_sp_compare_two_annotations/config.vsh.yaml diff --git a/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml b/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml new file mode 100644 index 00000000..69c05a45 --- /dev/null +++ b/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml @@ -0,0 +1,97 @@ +name: agat_sp_compare_two_annotations +namespace: agat +description: | + The script aims to compare two annotation of the same assembly. It + providea information about split/fusion of genes between the two + annotations. The most common cases are: + + * 1 => 0 ( gene uniq to file1) + * 0 => 1 ( gene uniq to file2) + * 1 => 1 ( 1 gene from file 1 overlaps only 1 gene from file2) + * 1 => ( 1 gene from file 1 overlaps genes + from file2) + * => split case (with file 1 as reference) + * => 1 ( genes from file 1 overlap only 1 gene from file2) + * => fusion case (with file 1 as reference) + + Then you can get more complex cases: + + * => ( genes from file 1 overlap genes from file2) + + The script output a folder containing a report of number of different + cases as well as a file per case type listing per line the gene + feature's ID involved in each case. +keywords: [gene annotations, GTF conversion] +links: + homepage: https://github.com/NBISweden/AGAT + documentation: https://agat.readthedocs.io/en/latest/tools/agat_sp_compare_two_annotations.html + issue_tracker: https://github.com/NBISweden/AGAT/issues + repository: https://github.com/NBISweden/AGAT +references: + doi: 10.5281/zenodo.3552717 +license: GPL-3.0 +authors: + - __merge__: /src/_authors/leila_paquay.yaml + roles: [ author, maintainer ] +argument_groups: + - name: Inputs + arguments: + - name: --gff1 + description: Input GTF/GFF file1. + type: file + required: true + direction: input + example: input1.gff + - name: --gff2 + description: Input GTF/GFF file2. + type: file + required: true + direction: input + example: input2.gff + - name: Outputs + arguments: + - name: --output + alternatives: [-o, --out] + description: | + Output folder. It contains a report that summarizes the type and number of cases, as well as a file per case type containing one case per line with the list of gene feature's ID (or other type of feature level1) from file1 then file2 separated by a |. + type: folder + direction: output + required: true + example: output_folder + - name: Arguments + arguments: + - name: --debug + alternatives: [-d] + description: Debug option, makes it easier to follow what is going on for debugging purposes. + type: boolean_true + - name: --verbose + alternatives: [-v] + description: Verbose option, makes it easier to follow what is going on. + type: boolean_true + required: false + example: true + - name: --config + alternatives: [-c] + description: | + Input AGAT config file. By default, AGAT takes as input `agat_config.yaml` file from the working directory if any, otherwise it takes the original `agat_config.yaml` shipped with AGAT. To get the `agat_config.yaml` locally type: `agat config --expose`. The `--config` option gives you the possibility to use your own AGAT config file (located elsewhere or named differently). + type: file + required: false + example: custom_config.yaml +resources: + - type: bash_script + path: script.sh +test_resources: + - type: bash_script + path: test.sh + - type: file + path: test_data +engines: + - type: docker + image: quay.io/biocontainers/agat:1.4.0--pl5321hdfd78af_0 + setup: + - type: docker + run: | + agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.txt +runners: + - type: executable + - type: nextflow \ No newline at end of file From 9274bd6dc2dcf7bdc847ecc5b7e5185e8045700d Mon Sep 17 00:00:00 2001 From: Leila011 Date: Wed, 7 Aug 2024 10:40:34 +0200 Subject: [PATCH 03/15] add run script --- .../agat_sp_compare_two_annotations/script.sh | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) create mode 100644 src/agat/agat_sp_compare_two_annotations/script.sh diff --git a/src/agat/agat_sp_compare_two_annotations/script.sh b/src/agat/agat_sp_compare_two_annotations/script.sh new file mode 100644 index 00000000..8c6d09a4 --- /dev/null +++ b/src/agat/agat_sp_compare_two_annotations/script.sh @@ -0,0 +1,17 @@ +#!/bin/bash + +## VIASH START +## VIASH END + +# unset flags +[[ "$par_debug" == "false" ]] && unset par_debug +[[ "$par_verbose" == "false" ]] && unset par_verbose + +# run agat_sp_compare_two_annotations.pl +agat_sp_compare_two_annotations.pl \ + -gff1 "$par_gff1" \ + -gff2 "$par_gff2" \ + -output "$par_output" \ + ${par_debug:+--debug} \ + ${par_verbose:+--verbose} \ + ${par_config:+--config "${par_config}"} From 8b7b2fab123d9ddd87c7c6788d1fda5d3d9877a5 Mon Sep 17 00:00:00 2001 From: Leila011 Date: Wed, 7 Aug 2024 10:43:03 +0200 Subject: [PATCH 04/15] add test data & expected output + script to fetch them --- .../test_data/1.gff | 942 ++++++++++++++++++ .../agat_sp_compare_two_annotations_1.txt | 59 ++ .../test_data/script.sh | 10 + 3 files changed, 1011 insertions(+) create mode 100644 src/agat/agat_sp_compare_two_annotations/test_data/1.gff create mode 100644 src/agat/agat_sp_compare_two_annotations/test_data/agat_sp_compare_two_annotations_1.txt create mode 100755 src/agat/agat_sp_compare_two_annotations/test_data/script.sh diff --git a/src/agat/agat_sp_compare_two_annotations/test_data/1.gff b/src/agat/agat_sp_compare_two_annotations/test_data/1.gff new file mode 100644 index 00000000..40a06c78 --- /dev/null +++ b/src/agat/agat_sp_compare_two_annotations/test_data/1.gff @@ -0,0 +1,942 @@ +##gff-version 3 +##sequence-region 1 1 43270923 +#!genome-build RAP-DB IRGSP-1.0 +#!genome-version IRGSP-1.0 +#!genome-date 2015-10 +#!genome-build-accession GCA_001433935.1 +1 RAP-DB chromosome 1 43270923 . . . ID=chromosome:1;Alias=Chr1,AP014957.1,NC_029256.1 +### +1 irgsp repeat_region 2000 2100 . + . ID=fakeRepeat1 +### +1 irgsp gene 2983 10815 . + . ID=gene:Os01g0100100;biotype=protein_coding;description=RabGAP/TBC domain containing protein. (Os01t0100100-01);gene_id=Os01g0100100;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 2983 10815 . + . ID=transcript:Os01t0100100-01;Parent=gene:Os01g0100100;biotype=protein_coding;transcript_id=Os01t0100100-01 +1 irgsp exon 2983 3268 . + . Parent=transcript:Os01t0100100-01;Name=Os01t0100100-01.exon1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0100100-01.exon1;rank=1 +1 irgsp five_prime_UTR 2983 3268 . + . Parent=transcript:Os01t0100100-01 +1 irgsp five_prime_UTR 3354 3448 . + . Parent=transcript:Os01t0100100-01 +1 irgsp exon 3354 3616 . + . Parent=transcript:Os01t0100100-01;Name=Os01t0100100-01.exon2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0100100-01.exon2;rank=2 +1 irgsp CDS 3449 3616 . + 0 ID=CDS:Os01t0100100-01;Parent=transcript:Os01t0100100-01;protein_id=Os01t0100100-01 +1 irgsp exon 4357 4455 . + . Parent=transcript:Os01t0100100-01;Name=Os01t0100100-01.exon3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0100100-01.exon3;rank=3 +1 irgsp CDS 4357 4455 . + 0 ID=CDS:Os01t0100100-01;Parent=transcript:Os01t0100100-01;protein_id=Os01t0100100-01 +1 irgsp exon 5457 5560 . + . Parent=transcript:Os01t0100100-01;Name=Os01t0100100-01.exon4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0100100-01.exon4;rank=4 +1 irgsp CDS 5457 5560 . + 0 ID=CDS:Os01t0100100-01;Parent=transcript:Os01t0100100-01;protein_id=Os01t0100100-01 +1 irgsp exon 7136 7944 . + . Parent=transcript:Os01t0100100-01;Name=Os01t0100100-01.exon5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0100100-01.exon5;rank=5 +1 irgsp CDS 7136 7944 . + 1 ID=CDS:Os01t0100100-01;Parent=transcript:Os01t0100100-01;protein_id=Os01t0100100-01 +1 irgsp exon 8028 8150 . + . Parent=transcript:Os01t0100100-01;Name=Os01t0100100-01.exon6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0100100-01.exon6;rank=6 +1 irgsp CDS 8028 8150 . + 2 ID=CDS:Os01t0100100-01;Parent=transcript:Os01t0100100-01;protein_id=Os01t0100100-01 +1 irgsp exon 8232 8320 . + . Parent=transcript:Os01t0100100-01;Name=Os01t0100100-01.exon7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0100100-01.exon7;rank=7 +1 irgsp CDS 8232 8320 . + 2 ID=CDS:Os01t0100100-01;Parent=transcript:Os01t0100100-01;protein_id=Os01t0100100-01 +1 irgsp exon 8408 8608 . + . Parent=transcript:Os01t0100100-01;Name=Os01t0100100-01.exon8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0100100-01.exon8;rank=8 +1 irgsp CDS 8408 8608 . + 0 ID=CDS:Os01t0100100-01;Parent=transcript:Os01t0100100-01;protein_id=Os01t0100100-01 +1 irgsp exon 9210 9615 . + . Parent=transcript:Os01t0100100-01;Name=Os01t0100100-01.exon9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0100100-01.exon9;rank=9 +1 irgsp CDS 9210 9615 . + 0 ID=CDS:Os01t0100100-01;Parent=transcript:Os01t0100100-01;protein_id=Os01t0100100-01 +1 irgsp exon 10102 10187 . + . Parent=transcript:Os01t0100100-01;Name=Os01t0100100-01.exon10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0100100-01.exon10;rank=10 +1 irgsp CDS 10102 10187 . + 2 ID=CDS:Os01t0100100-01;Parent=transcript:Os01t0100100-01;protein_id=Os01t0100100-01 +1 irgsp CDS 10274 10297 . + 0 ID=CDS:Os01t0100100-01;Parent=transcript:Os01t0100100-01;protein_id=Os01t0100100-01 +1 irgsp exon 10274 10430 . + . Parent=transcript:Os01t0100100-01;Name=Os01t0100100-01.exon11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0100100-01.exon11;rank=11 +1 irgsp three_prime_UTR 10298 10430 . + . Parent=transcript:Os01t0100100-01 +1 irgsp exon 10504 10815 . + . Parent=transcript:Os01t0100100-01;Name=Os01t0100100-01.exon12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0100100-01.exon12;rank=12 +1 irgsp three_prime_UTR 10504 10815 . + . Parent=transcript:Os01t0100100-01 +### +1 irgsp gene 11218 12435 . + . ID=gene:Os01g0100200;biotype=protein_coding;description=Conserved hypothetical protein. (Os01t0100200-01);gene_id=Os01g0100200;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 11218 12435 . + . ID=transcript:Os01t0100200-01;Parent=gene:Os01g0100200;biotype=protein_coding;transcript_id=Os01t0100200-01 +1 irgsp five_prime_UTR 11218 11797 . + . Parent=transcript:Os01t0100200-01 +1 irgsp exon 11218 12060 . + . Parent=transcript:Os01t0100200-01;Name=Os01t0100200-01.exon1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0100200-01.exon1;rank=1 +1 irgsp CDS 11798 12060 . + 0 ID=CDS:Os01t0100200-01;Parent=transcript:Os01t0100200-01;protein_id=Os01t0100200-01 +1 irgsp CDS 12152 12317 . + 1 ID=CDS:Os01t0100200-01;Parent=transcript:Os01t0100200-01;protein_id=Os01t0100200-01 +1 irgsp exon 12152 12435 . + . Parent=transcript:Os01t0100200-01;Name=Os01t0100200-01.exon2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0100200-01.exon2;rank=2 +1 irgsp three_prime_UTR 12318 12435 . + . Parent=transcript:Os01t0100200-01 +### +1 irgsp gene 11372 12284 . - . ID=gene:Os01g0100300;biotype=protein_coding;description=Cytochrome P450 domain containing protein. (Os01t0100300-00);gene_id=Os01g0100300;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 11372 12284 . - . ID=transcript:Os01t0100300-00;Parent=gene:Os01g0100300;biotype=protein_coding;transcript_id=Os01t0100300-00 +1 irgsp exon 11372 12042 . - . Parent=transcript:Os01t0100300-00;Name=Os01t0100300-00.exon2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0100300-00.exon2;rank=2 +1 irgsp CDS 11372 12042 . - 2 ID=CDS:Os01t0100300-00;Parent=transcript:Os01t0100300-00;protein_id=Os01t0100300-00 +1 irgsp exon 12146 12284 . - . Parent=transcript:Os01t0100300-00;Name=Os01t0100300-00.exon1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0100300-00.exon1;rank=1 +1 irgsp CDS 12146 12284 . - 0 ID=CDS:Os01t0100300-00;Parent=transcript:Os01t0100300-00;protein_id=Os01t0100300-00 +### +1 irgsp gene 12721 15685 . + . ID=gene:Os01g0100400;biotype=protein_coding;description=Similar to Pectinesterase-like protein. (Os01t0100400-01);gene_id=Os01g0100400;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 12721 15685 . + . ID=transcript:Os01t0100400-01;Parent=gene:Os01g0100400;biotype=protein_coding;transcript_id=Os01t0100400-01 +1 irgsp five_prime_UTR 12721 12773 . + . Parent=transcript:Os01t0100400-01 +1 irgsp exon 12721 13813 . + . Parent=transcript:Os01t0100400-01;Name=Os01t0100400-01.exon1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0100400-01.exon1;rank=1 +1 irgsp CDS 12774 13813 . + 0 ID=CDS:Os01t0100400-01;Parent=transcript:Os01t0100400-01;protein_id=Os01t0100400-01 +1 irgsp exon 13906 14271 . + . Parent=transcript:Os01t0100400-01;Name=Os01t0100400-01.exon2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0100400-01.exon2;rank=2 +1 irgsp CDS 13906 14271 . + 1 ID=CDS:Os01t0100400-01;Parent=transcript:Os01t0100400-01;protein_id=Os01t0100400-01 +1 irgsp exon 14359 14437 . + . Parent=transcript:Os01t0100400-01;Name=Os01t0100400-01.exon3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0100400-01.exon3;rank=3 +1 irgsp CDS 14359 14437 . + 1 ID=CDS:Os01t0100400-01;Parent=transcript:Os01t0100400-01;protein_id=Os01t0100400-01 +1 irgsp exon 14969 15171 . + . Parent=transcript:Os01t0100400-01;Name=Os01t0100400-01.exon4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0100400-01.exon4;rank=4 +1 irgsp CDS 14969 15171 . + 0 ID=CDS:Os01t0100400-01;Parent=transcript:Os01t0100400-01;protein_id=Os01t0100400-01 +1 irgsp CDS 15266 15359 . + 1 ID=CDS:Os01t0100400-01;Parent=transcript:Os01t0100400-01;protein_id=Os01t0100400-01 +1 irgsp exon 15266 15685 . + . Parent=transcript:Os01t0100400-01;Name=Os01t0100400-01.exon5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0100400-01.exon5;rank=5 +1 irgsp three_prime_UTR 15360 15685 . + . Parent=transcript:Os01t0100400-01 +### +1 irgsp gene 12808 13978 . - . ID=gene:Os01g0100466;biotype=protein_coding;description=Hypothetical protein. (Os01t0100466-00);gene_id=Os01g0100466;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 12808 13978 . - . ID=transcript:Os01t0100466-00;Parent=gene:Os01g0100466;biotype=protein_coding;transcript_id=Os01t0100466-00 +1 irgsp three_prime_UTR 12808 12868 . - . Parent=transcript:Os01t0100466-00 +1 irgsp exon 12808 13782 . - . Parent=transcript:Os01t0100466-00;Name=Os01t0100466-00.exon2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0100466-00.exon2;rank=2 +1 irgsp CDS 12869 13102 . - 0 ID=CDS:Os01t0100466-00;Parent=transcript:Os01t0100466-00;protein_id=Os01t0100466-00 +1 irgsp five_prime_UTR 13103 13782 . - . Parent=transcript:Os01t0100466-00 +1 irgsp exon 13880 13978 . - . Parent=transcript:Os01t0100466-00;Name=Os01t0100466-00.exon1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0100466-00.exon1;rank=1 +1 irgsp five_prime_UTR 13880 13978 . - . Parent=transcript:Os01t0100466-00 +### +1 irgsp gene 16399 20144 . + . ID=gene:Os01g0100500;biotype=protein_coding;description=Immunoglobulin-like domain containing protein. (Os01t0100500-01);gene_id=Os01g0100500;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 16399 20144 . + . ID=transcript:Os01t0100500-01;Parent=gene:Os01g0100500;biotype=protein_coding;transcript_id=Os01t0100500-01 +1 irgsp five_prime_UTR 16399 16598 . + . Parent=transcript:Os01t0100500-01 +1 irgsp exon 16399 16976 . + . Parent=transcript:Os01t0100500-01;Name=Os01t0100500-01.exon1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0100500-01.exon1;rank=1 +1 irgsp CDS 16599 16976 . + 0 ID=CDS:Os01t0100500-01;Parent=transcript:Os01t0100500-01;protein_id=Os01t0100500-01 +1 irgsp exon 17383 17474 . + . Parent=transcript:Os01t0100500-01;Name=Os01t0100500-01.exon2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0100500-01.exon2;rank=2 +1 irgsp CDS 17383 17474 . + 0 ID=CDS:Os01t0100500-01;Parent=transcript:Os01t0100500-01;protein_id=Os01t0100500-01 +1 irgsp exon 17558 18258 . + . Parent=transcript:Os01t0100500-01;Name=Os01t0100500-01.exon3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0100500-01.exon3;rank=3 +1 irgsp CDS 17558 18258 . + 1 ID=CDS:Os01t0100500-01;Parent=transcript:Os01t0100500-01;protein_id=Os01t0100500-01 +1 irgsp exon 18501 18571 . + . Parent=transcript:Os01t0100500-01;Name=Os01t0100500-01.exon4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0100500-01.exon4;rank=4 +1 irgsp CDS 18501 18571 . + 2 ID=CDS:Os01t0100500-01;Parent=transcript:Os01t0100500-01;protein_id=Os01t0100500-01 +1 irgsp exon 18968 19057 . + . Parent=transcript:Os01t0100500-01;Name=Os01t0100500-01.exon5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0100500-01.exon5;rank=5 +1 irgsp CDS 18968 19057 . + 0 ID=CDS:Os01t0100500-01;Parent=transcript:Os01t0100500-01;protein_id=Os01t0100500-01 +1 irgsp exon 19142 19321 . + . Parent=transcript:Os01t0100500-01;Name=Os01t0100500-01.exon6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0100500-01.exon6;rank=6 +1 irgsp CDS 19142 19321 . + 0 ID=CDS:Os01t0100500-01;Parent=transcript:Os01t0100500-01;protein_id=Os01t0100500-01 +1 irgsp CDS 19531 19593 . + 0 ID=CDS:Os01t0100500-01;Parent=transcript:Os01t0100500-01;protein_id=Os01t0100500-01 +1 irgsp exon 19531 19629 . + . Parent=transcript:Os01t0100500-01;Name=Os01t0100500-01.exon7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0100500-01.exon7;rank=7 +1 irgsp three_prime_UTR 19594 19629 . + . Parent=transcript:Os01t0100500-01 +1 irgsp exon 19734 20144 . + . Parent=transcript:Os01t0100500-01;Name=Os01t0100500-01.exon8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0100500-01.exon8;rank=8 +1 irgsp three_prime_UTR 19734 20144 . + . Parent=transcript:Os01t0100500-01 +### +1 irgsp gene 22841 26892 . + . ID=gene:Os01g0100600;biotype=protein_coding;description=Single-stranded nucleic acid binding R3H domain containing protein. (Os01t0100600-01);gene_id=Os01g0100600;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 22841 26892 . + . ID=transcript:Os01t0100600-01;Parent=gene:Os01g0100600;biotype=protein_coding;transcript_id=Os01t0100600-01 +1 irgsp five_prime_UTR 22841 23231 . + . Parent=transcript:Os01t0100600-01 +1 irgsp exon 22841 23281 . + . Parent=transcript:Os01t0100600-01;Name=Os01t0100600-01.exon1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0100600-01.exon1;rank=1 +1 irgsp CDS 23232 23281 . + 0 ID=CDS:Os01t0100600-01;Parent=transcript:Os01t0100600-01;protein_id=Os01t0100600-01 +1 irgsp exon 23572 23847 . + . Parent=transcript:Os01t0100600-01;Name=Os01t0100600-01.exon2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0100600-01.exon2;rank=2 +1 irgsp CDS 23572 23847 . + 1 ID=CDS:Os01t0100600-01;Parent=transcript:Os01t0100600-01;protein_id=Os01t0100600-01 +1 irgsp exon 23962 24033 . + . Parent=transcript:Os01t0100600-01;Name=Os01t0100600-01.exon3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0100600-01.exon3;rank=3 +1 irgsp CDS 23962 24033 . + 1 ID=CDS:Os01t0100600-01;Parent=transcript:Os01t0100600-01;protein_id=Os01t0100600-01 +1 irgsp exon 24492 24577 . + . Parent=transcript:Os01t0100600-01;Name=Os01t0100600-01.exon4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0100600-01.exon4;rank=4 +1 irgsp CDS 24492 24577 . + 1 ID=CDS:Os01t0100600-01;Parent=transcript:Os01t0100600-01;protein_id=Os01t0100600-01 +1 irgsp exon 25445 25519 . + . Parent=transcript:Os01t0100600-01;Name=Os01t0100600-01.exon5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0100600-01.exon5;rank=5 +1 irgsp CDS 25445 25519 . + 2 ID=CDS:Os01t0100600-01;Parent=transcript:Os01t0100600-01;protein_id=Os01t0100600-01 +1 irgsp CDS 25883 26391 . + 2 ID=CDS:Os01t0100600-01;Parent=transcript:Os01t0100600-01;protein_id=Os01t0100600-01 +1 irgsp exon 25883 26892 . + . Parent=transcript:Os01t0100600-01;Name=Os01t0100600-01.exon6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0100600-01.exon6;rank=6 +1 irgsp three_prime_UTR 26392 26892 . + . Parent=transcript:Os01t0100600-01 +### +1 irgsp gene 25861 26424 . - . ID=gene:Os01g0100650;biotype=protein_coding;description=Hypothetical gene. (Os01t0100650-00);gene_id=Os01g0100650;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 25861 26424 . - . ID=transcript:Os01t0100650-00;Parent=gene:Os01g0100650;biotype=protein_coding;transcript_id=Os01t0100650-00 +1 irgsp three_prime_UTR 25861 26039 . - . Parent=transcript:Os01t0100650-00 +1 irgsp exon 25861 26424 . - . Parent=transcript:Os01t0100650-00;Name=Os01t0100650-00.exon1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0100650-00.exon1;rank=1 +1 irgsp CDS 26040 26423 . - 0 ID=CDS:Os01t0100650-00;Parent=transcript:Os01t0100650-00;protein_id=Os01t0100650-00 +1 irgsp five_prime_UTR 26424 26424 . - . Parent=transcript:Os01t0100650-00 +### +1 irgsp gene 27143 28644 . + . ID=gene:Os01g0100700;biotype=protein_coding;description=Similar to 40S ribosomal protein S5-1. (Os01t0100700-01);gene_id=Os01g0100700;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 27143 28644 . + . ID=transcript:Os01t0100700-01;Parent=gene:Os01g0100700;biotype=protein_coding;transcript_id=Os01t0100700-01 +1 irgsp five_prime_UTR 27143 27220 . + . Parent=transcript:Os01t0100700-01 +1 irgsp exon 27143 27292 . + . Parent=transcript:Os01t0100700-01;Name=Os01t0100700-01.exon1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0100700-01.exon1;rank=1 +1 irgsp CDS 27221 27292 . + 0 ID=CDS:Os01t0100700-01;Parent=transcript:Os01t0100700-01;protein_id=Os01t0100700-01 +1 irgsp exon 27370 27641 . + . Parent=transcript:Os01t0100700-01;Name=Os01t0100700-01.exon2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0100700-01.exon2;rank=2 +1 irgsp CDS 27370 27641 . + 0 ID=CDS:Os01t0100700-01;Parent=transcript:Os01t0100700-01;protein_id=Os01t0100700-01 +1 irgsp exon 28090 28293 . + . Parent=transcript:Os01t0100700-01;Name=Os01t0100700-01.exon3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0100700-01.exon3;rank=3 +1 irgsp CDS 28090 28293 . + 1 ID=CDS:Os01t0100700-01;Parent=transcript:Os01t0100700-01;protein_id=Os01t0100700-01 +1 irgsp CDS 28365 28419 . + 1 ID=CDS:Os01t0100700-01;Parent=transcript:Os01t0100700-01;protein_id=Os01t0100700-01 +1 irgsp exon 28365 28644 . + . Parent=transcript:Os01t0100700-01;Name=Os01t0100700-01.exon4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0100700-01.exon4;rank=4 +1 irgsp three_prime_UTR 28420 28644 . + . Parent=transcript:Os01t0100700-01 +### +1 irgsp gene 29818 34453 . + . ID=gene:Os01g0100800;biotype=protein_coding;description=Protein of unknown function DUF1664 family protein. (Os01t0100800-01);gene_id=Os01g0100800;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 29818 34453 . + . ID=transcript:Os01t0100800-01;Parent=gene:Os01g0100800;biotype=protein_coding;transcript_id=Os01t0100800-01 +1 irgsp five_prime_UTR 29818 29939 . + . Parent=transcript:Os01t0100800-01 +1 irgsp exon 29818 29976 . + . Parent=transcript:Os01t0100800-01;Name=Os01t0100800-01.exon1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0100800-01.exon1;rank=1 +1 irgsp CDS 29940 29976 . + 0 ID=CDS:Os01t0100800-01;Parent=transcript:Os01t0100800-01;protein_id=Os01t0100800-01 +1 irgsp exon 30146 30228 . + . Parent=transcript:Os01t0100800-01;Name=Os01t0100800-01.exon2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0100800-01.exon2;rank=2 +1 irgsp CDS 30146 30228 . + 2 ID=CDS:Os01t0100800-01;Parent=transcript:Os01t0100800-01;protein_id=Os01t0100800-01 +1 irgsp exon 30735 30806 . + . Parent=transcript:Os01t0100800-01;Name=Os01t0100800-01.exon3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0100800-01.exon3;rank=3 +1 irgsp CDS 30735 30806 . + 0 ID=CDS:Os01t0100800-01;Parent=transcript:Os01t0100800-01;protein_id=Os01t0100800-01 +1 irgsp exon 30885 30963 . + . Parent=transcript:Os01t0100800-01;Name=Os01t0100800-01.exon4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0100800-01.exon4;rank=4 +1 irgsp CDS 30885 30963 . + 0 ID=CDS:Os01t0100800-01;Parent=transcript:Os01t0100800-01;protein_id=Os01t0100800-01 +1 irgsp exon 31258 31325 . + . Parent=transcript:Os01t0100800-01;Name=Os01t0100800-01.exon5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0100800-01.exon5;rank=5 +1 irgsp CDS 31258 31325 . + 2 ID=CDS:Os01t0100800-01;Parent=transcript:Os01t0100800-01;protein_id=Os01t0100800-01 +1 irgsp exon 31505 31606 . + . Parent=transcript:Os01t0100800-01;Name=Os01t0100800-01.exon6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0100800-01.exon6;rank=6 +1 irgsp CDS 31505 31606 . + 0 ID=CDS:Os01t0100800-01;Parent=transcript:Os01t0100800-01;protein_id=Os01t0100800-01 +1 irgsp exon 32377 32466 . + . Parent=transcript:Os01t0100800-01;Name=Os01t0100800-01.exon7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0100800-01.exon7;rank=7 +1 irgsp CDS 32377 32466 . + 0 ID=CDS:Os01t0100800-01;Parent=transcript:Os01t0100800-01;protein_id=Os01t0100800-01 +1 irgsp exon 32542 32616 . + . Parent=transcript:Os01t0100800-01;Name=Os01t0100800-01.exon8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0100800-01.exon8;rank=8 +1 irgsp CDS 32542 32616 . + 0 ID=CDS:Os01t0100800-01;Parent=transcript:Os01t0100800-01;protein_id=Os01t0100800-01 +1 irgsp exon 32712 32744 . + . Parent=transcript:Os01t0100800-01;Name=Os01t0100800-01.exon9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0100800-01.exon9;rank=9 +1 irgsp CDS 32712 32744 . + 0 ID=CDS:Os01t0100800-01;Parent=transcript:Os01t0100800-01;protein_id=Os01t0100800-01 +1 irgsp exon 32828 32905 . + . Parent=transcript:Os01t0100800-01;Name=Os01t0100800-01.exon10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0100800-01.exon10;rank=10 +1 irgsp CDS 32828 32905 . + 0 ID=CDS:Os01t0100800-01;Parent=transcript:Os01t0100800-01;protein_id=Os01t0100800-01 +1 irgsp exon 33274 33330 . + . Parent=transcript:Os01t0100800-01;Name=Os01t0100800-01.exon11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0100800-01.exon11;rank=11 +1 irgsp CDS 33274 33330 . + 0 ID=CDS:Os01t0100800-01;Parent=transcript:Os01t0100800-01;protein_id=Os01t0100800-01 +1 irgsp exon 33400 33471 . + . Parent=transcript:Os01t0100800-01;Name=Os01t0100800-01.exon12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0100800-01.exon12;rank=12 +1 irgsp CDS 33400 33471 . + 0 ID=CDS:Os01t0100800-01;Parent=transcript:Os01t0100800-01;protein_id=Os01t0100800-01 +1 irgsp exon 33543 33617 . + . Parent=transcript:Os01t0100800-01;Name=Os01t0100800-01.exon13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0100800-01.exon13;rank=13 +1 irgsp CDS 33543 33617 . + 0 ID=CDS:Os01t0100800-01;Parent=transcript:Os01t0100800-01;protein_id=Os01t0100800-01 +1 irgsp CDS 33975 34124 . + 0 ID=CDS:Os01t0100800-01;Parent=transcript:Os01t0100800-01;protein_id=Os01t0100800-01 +1 irgsp exon 33975 34453 . + . Parent=transcript:Os01t0100800-01;Name=Os01t0100800-01.exon14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0100800-01.exon14;rank=14 +1 irgsp three_prime_UTR 34125 34453 . + . Parent=transcript:Os01t0100800-01 +### +1 irgsp gene 35623 41136 . + . ID=gene:Os01g0100900;Name=SPHINGOSINE-1-PHOSPHATE LYASE 1%2C Sphingosine-1-Phoshpate Lyase 1;biotype=protein_coding;description=Sphingosine-1-phosphate lyase%2C Disease resistance response (Os01t0100900-01);gene_id=Os01g0100900;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 35623 41136 . + . ID=transcript:Os01t0100900-01;Parent=gene:Os01g0100900;biotype=protein_coding;transcript_id=Os01t0100900-01 +1 irgsp five_prime_UTR 35623 35742 . + . Parent=transcript:Os01t0100900-01 +1 irgsp exon 35623 35939 . + . Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01.exon1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0100900-01.exon1;rank=1 +1 irgsp CDS 35743 35939 . + 0 ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01 +1 irgsp exon 36027 36072 . + . Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01.exon2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0100900-01.exon2;rank=2 +1 irgsp CDS 36027 36072 . + 1 ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01 +1 irgsp exon 36517 36668 . + . Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01.exon3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0100900-01.exon3;rank=3 +1 irgsp CDS 36517 36668 . + 0 ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01 +1 irgsp exon 36818 36877 . + . Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01.exon4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0100900-01.exon4;rank=4 +1 irgsp CDS 36818 36877 . + 1 ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01 +1 irgsp exon 37594 37818 . + . Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01.exon5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0100900-01.exon5;rank=5 +1 irgsp CDS 37594 37818 . + 1 ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01 +1 irgsp exon 37892 38033 . + . Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01.exon6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0100900-01.exon6;rank=6 +1 irgsp CDS 37892 38033 . + 1 ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01 +1 irgsp exon 38276 38326 . + . Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01.exon7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0100900-01.exon7;rank=7 +1 irgsp CDS 38276 38326 . + 0 ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01 +1 irgsp exon 38434 38525 . + . Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01.exon8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0100900-01.exon8;rank=8 +1 irgsp CDS 38434 38525 . + 0 ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01 +1 irgsp exon 39319 39445 . + . Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01.exon9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0100900-01.exon9;rank=9 +1 irgsp CDS 39319 39445 . + 1 ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01 +1 irgsp exon 39553 39568 . + . Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01.exon10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0100900-01.exon10;rank=10 +1 irgsp CDS 39553 39568 . + 0 ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01 +1 irgsp exon 39939 40046 . + . Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01.exon11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0100900-01.exon11;rank=11 +1 irgsp CDS 39939 40046 . + 2 ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01 +1 irgsp exon 40135 40189 . + . Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01.exon12;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0100900-01.exon12;rank=12 +1 irgsp CDS 40135 40189 . + 2 ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01 +1 irgsp exon 40456 40602 . + . Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01.exon13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0100900-01.exon13;rank=13 +1 irgsp CDS 40456 40602 . + 1 ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01 +1 irgsp exon 40703 40781 . + . Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01.exon14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0100900-01.exon14;rank=14 +1 irgsp CDS 40703 40781 . + 1 ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01 +1 irgsp CDS 40885 41007 . + 0 ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01 +1 irgsp exon 40885 41136 . + . Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01.exon15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0100900-01.exon15;rank=15 +1 irgsp three_prime_UTR 41008 41136 . + . Parent=transcript:Os01t0100900-01 +### +1 irgsp gene 58658 61090 . + . ID=gene:Os01g0101150;biotype=protein_coding;description=Hypothetical conserved gene. (Os01t0101150-00);gene_id=Os01g0101150;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 58658 61090 . + . ID=transcript:Os01t0101150-00;Parent=gene:Os01g0101150;biotype=protein_coding;transcript_id=Os01t0101150-00 +1 irgsp exon 58658 61090 . + . Parent=transcript:Os01t0101150-00;Name=Os01t0101150-00.exon1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0101150-00.exon1;rank=1 +1 irgsp CDS 58658 61090 . + 0 ID=CDS:Os01t0101150-00;Parent=transcript:Os01t0101150-00;protein_id=Os01t0101150-00 +### +1 irgsp gene 62060 65537 . + . ID=gene:Os01g0101200;biotype=protein_coding;description=2%2C3-diketo-5-methylthio-1-phosphopentane phosphatase domain containing protein. (Os01t0101200-01)%3B2%2C3-diketo-5-methylthio-1-phosphopentane phosphatase domain containing protein. (Os01t0101200-02);gene_id=Os01g0101200;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 62060 63576 . + . ID=transcript:Os01t0101200-01;Parent=gene:Os01g0101200;biotype=protein_coding;transcript_id=Os01t0101200-01 +1 irgsp five_prime_UTR 62060 62103 . + . Parent=transcript:Os01t0101200-01 +1 irgsp exon 62060 62295 . + . Parent=transcript:Os01t0101200-01;Name=Os01t0101200-01.exon1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0101200-01.exon1;rank=1 +1 irgsp CDS 62104 62295 . + 0 ID=CDS:Os01t0101200-01;Parent=transcript:Os01t0101200-01;protein_id=Os01t0101200-01 +1 irgsp exon 62385 62905 . + . Parent=transcript:Os01t0101200-01;Name=Os01t0101200-02.exon2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0101200-02.exon2;rank=2 +1 irgsp CDS 62385 62905 . + 0 ID=CDS:Os01t0101200-01;Parent=transcript:Os01t0101200-01;protein_id=Os01t0101200-01 +1 irgsp exon 62996 63114 . + . Parent=transcript:Os01t0101200-01;Name=Os01t0101200-02.exon3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0101200-02.exon3;rank=3 +1 irgsp CDS 62996 63114 . + 1 ID=CDS:Os01t0101200-01;Parent=transcript:Os01t0101200-01;protein_id=Os01t0101200-01 +1 irgsp CDS 63248 63345 . + 2 ID=CDS:Os01t0101200-01;Parent=transcript:Os01t0101200-01;protein_id=Os01t0101200-01 +1 irgsp exon 63248 63576 . + . Parent=transcript:Os01t0101200-01;Name=Os01t0101200-01.exon4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0101200-01.exon4;rank=4 +1 irgsp three_prime_UTR 63346 63576 . + . Parent=transcript:Os01t0101200-01 +1 irgsp mRNA 62112 65537 . + . ID=transcript:Os01t0101200-02;Parent=gene:Os01g0101200;biotype=protein_coding;transcript_id=Os01t0101200-02 +1 irgsp five_prime_UTR 62112 62112 . + . Parent=transcript:Os01t0101200-02 +1 irgsp exon 62112 62295 . + . Parent=transcript:Os01t0101200-02;Name=Os01t0101200-02.exon1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0101200-02.exon1;rank=1 +1 irgsp CDS 62113 62295 . + 0 ID=CDS:Os01t0101200-02;Parent=transcript:Os01t0101200-02;protein_id=Os01t0101200-02 +1 irgsp exon 62385 62905 . + . Parent=transcript:Os01t0101200-02;Name=Os01t0101200-02.exon2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0101200-02.exon2;rank=2 +1 irgsp CDS 62385 62905 . + 0 ID=CDS:Os01t0101200-02;Parent=transcript:Os01t0101200-02;protein_id=Os01t0101200-02 +1 irgsp exon 62996 63114 . + . Parent=transcript:Os01t0101200-02;Name=Os01t0101200-02.exon3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0101200-02.exon3;rank=3 +1 irgsp CDS 62996 63114 . + 1 ID=CDS:Os01t0101200-02;Parent=transcript:Os01t0101200-02;protein_id=Os01t0101200-02 +1 irgsp CDS 63248 63345 . + 2 ID=CDS:Os01t0101200-02;Parent=transcript:Os01t0101200-02;protein_id=Os01t0101200-02 +1 irgsp exon 63248 65537 . + . Parent=transcript:Os01t0101200-02;Name=Os01t0101200-02.exon4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0101200-02.exon4;rank=4 +1 irgsp three_prime_UTR 63346 65537 . + . Parent=transcript:Os01t0101200-02 +### +1 irgsp gene 63350 66302 . - . ID=gene:Os01g0101300;biotype=protein_coding;description=Similar to MRNA%2C partial cds%2C clone: RAFL22-26-L17. (Fragment). (Os01t0101300-01);gene_id=Os01g0101300;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 63350 66302 . - . ID=transcript:Os01t0101300-01;Parent=gene:Os01g0101300;biotype=protein_coding;transcript_id=Os01t0101300-01 +1 irgsp three_prime_UTR 63350 63669 . - . Parent=transcript:Os01t0101300-01 +1 irgsp exon 63350 63783 . - . Parent=transcript:Os01t0101300-01;Name=Os01t0101300-01.exon7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0101300-01.exon7;rank=7 +1 irgsp CDS 63670 63783 . - 0 ID=CDS:Os01t0101300-01;Parent=transcript:Os01t0101300-01;protein_id=Os01t0101300-01 +1 irgsp exon 63877 64020 . - . Parent=transcript:Os01t0101300-01;Name=Os01t0101300-01.exon6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0101300-01.exon6;rank=6 +1 irgsp CDS 63877 64020 . - 0 ID=CDS:Os01t0101300-01;Parent=transcript:Os01t0101300-01;protein_id=Os01t0101300-01 +1 irgsp exon 64339 64431 . - . Parent=transcript:Os01t0101300-01;Name=Os01t0101300-01.exon5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0101300-01.exon5;rank=5 +1 irgsp CDS 64339 64431 . - 0 ID=CDS:Os01t0101300-01;Parent=transcript:Os01t0101300-01;protein_id=Os01t0101300-01 +1 irgsp exon 64665 64779 . - . Parent=transcript:Os01t0101300-01;Name=Os01t0101300-01.exon4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0101300-01.exon4;rank=4 +1 irgsp CDS 64665 64779 . - 1 ID=CDS:Os01t0101300-01;Parent=transcript:Os01t0101300-01;protein_id=Os01t0101300-01 +1 irgsp exon 64902 65152 . - . Parent=transcript:Os01t0101300-01;Name=Os01t0101300-01.exon3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0101300-01.exon3;rank=3 +1 irgsp CDS 64902 65152 . - 0 ID=CDS:Os01t0101300-01;Parent=transcript:Os01t0101300-01;protein_id=Os01t0101300-01 +1 irgsp exon 65248 65431 . - . Parent=transcript:Os01t0101300-01;Name=Os01t0101300-01.exon2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0101300-01.exon2;rank=2 +1 irgsp CDS 65248 65431 . - 1 ID=CDS:Os01t0101300-01;Parent=transcript:Os01t0101300-01;protein_id=Os01t0101300-01 +1 irgsp CDS 65628 65950 . - 0 ID=CDS:Os01t0101300-01;Parent=transcript:Os01t0101300-01;protein_id=Os01t0101300-01 +1 irgsp exon 65628 66302 . - . Parent=transcript:Os01t0101300-01;Name=Os01t0101300-01.exon1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0101300-01.exon1;rank=1 +1 irgsp five_prime_UTR 65951 66302 . - . Parent=transcript:Os01t0101300-01 +### +1 irgsp gene 72816 78349 . + . ID=gene:Os01g0101600;biotype=protein_coding;description=Immunoglobulin-like fold domain containing protein. (Os01t0101600-01)%3BImmunoglobulin-like fold domain containing protein. (Os01t0101600-02)%3BHypothetical conserved gene. (Os01t0101600-03);gene_id=Os01g0101600;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 72816 78349 . + . ID=transcript:Os01t0101600-01;Parent=gene:Os01g0101600;biotype=protein_coding;transcript_id=Os01t0101600-01 +1 irgsp five_prime_UTR 72816 72902 . + . Parent=transcript:Os01t0101600-01 +1 irgsp exon 72816 73935 . + . Parent=transcript:Os01t0101600-01;Name=Os01t0101600-01.exon1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0101600-01.exon1;rank=1 +1 irgsp CDS 72903 73935 . + 0 ID=CDS:Os01t0101600-01;Parent=transcript:Os01t0101600-01;protein_id=Os01t0101600-01 +1 irgsp exon 74468 74981 . + . Parent=transcript:Os01t0101600-01;Name=Os01t0101600-02.exon2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0101600-02.exon2;rank=2 +1 irgsp CDS 74468 74981 . + 2 ID=CDS:Os01t0101600-01;Parent=transcript:Os01t0101600-01;protein_id=Os01t0101600-01 +1 irgsp CDS 75619 77008 . + 1 ID=CDS:Os01t0101600-01;Parent=transcript:Os01t0101600-01;protein_id=Os01t0101600-01 +1 irgsp exon 75619 77205 . + . Parent=transcript:Os01t0101600-01;Name=Os01t0101600-01.exon3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0101600-01.exon3;rank=3 +1 irgsp three_prime_UTR 77009 77205 . + . Parent=transcript:Os01t0101600-01 +1 irgsp exon 77333 78349 . + . Parent=transcript:Os01t0101600-01;Name=Os01t0101600-01.exon4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0101600-01.exon4;rank=4 +1 irgsp three_prime_UTR 77333 78349 . + . Parent=transcript:Os01t0101600-01 +1 irgsp mRNA 72823 77699 . + . ID=transcript:Os01t0101600-02;Parent=gene:Os01g0101600;biotype=protein_coding;transcript_id=Os01t0101600-02 +1 irgsp five_prime_UTR 72823 72902 . + . Parent=transcript:Os01t0101600-02 +1 irgsp exon 72823 73935 . + . Parent=transcript:Os01t0101600-02;Name=Os01t0101600-02.exon1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0101600-02.exon1;rank=1 +1 irgsp CDS 72903 73935 . + 0 ID=CDS:Os01t0101600-02;Parent=transcript:Os01t0101600-02;protein_id=Os01t0101600-02 +1 irgsp exon 74468 74981 . + . Parent=transcript:Os01t0101600-02;Name=Os01t0101600-02.exon2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0101600-02.exon2;rank=2 +1 irgsp CDS 74468 74981 . + 2 ID=CDS:Os01t0101600-02;Parent=transcript:Os01t0101600-02;protein_id=Os01t0101600-02 +1 irgsp CDS 75619 77008 . + 1 ID=CDS:Os01t0101600-02;Parent=transcript:Os01t0101600-02;protein_id=Os01t0101600-02 +1 irgsp exon 75619 77699 . + . Parent=transcript:Os01t0101600-02;Name=Os01t0101600-02.exon3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0101600-02.exon3;rank=3 +1 irgsp three_prime_UTR 77009 77699 . + . Parent=transcript:Os01t0101600-02 +1 irgsp mRNA 75942 77699 . + . ID=transcript:Os01t0101600-03;Parent=gene:Os01g0101600;biotype=protein_coding;transcript_id=Os01t0101600-03 +1 irgsp five_prime_UTR 75942 75943 . + . Parent=transcript:Os01t0101600-03 +1 irgsp exon 75942 77699 . + . Parent=transcript:Os01t0101600-03;Name=Os01t0101600-03.exon1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0101600-03.exon1;rank=1 +1 irgsp CDS 75944 77008 . + 0 ID=CDS:Os01t0101600-03;Parent=transcript:Os01t0101600-03;protein_id=Os01t0101600-03 +1 irgsp three_prime_UTR 77009 77699 . + . Parent=transcript:Os01t0101600-03 +### +1 irgsp gene 82426 84095 . + . ID=gene:Os01g0101700;Name=DnaJ domain protein C1%2C rice DJC26 homolog;biotype=protein_coding;description=Similar to chaperone protein dnaJ 20. (Os01t0101700-00);gene_id=Os01g0101700;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 82426 84095 . + . ID=transcript:Os01t0101700-00;Parent=gene:Os01g0101700;biotype=protein_coding;transcript_id=Os01t0101700-00 +1 irgsp five_prime_UTR 82426 82506 . + . Parent=transcript:Os01t0101700-00 +1 irgsp exon 82426 82932 . + . Parent=transcript:Os01t0101700-00;Name=Os01t0101700-00.exon1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0101700-00.exon1;rank=1 +1 irgsp CDS 82507 82932 . + 0 ID=CDS:Os01t0101700-00;Parent=transcript:Os01t0101700-00;protein_id=Os01t0101700-00 +1 irgsp CDS 83724 83864 . + 0 ID=CDS:Os01t0101700-00;Parent=transcript:Os01t0101700-00;protein_id=Os01t0101700-00 +1 irgsp exon 83724 84095 . + . Parent=transcript:Os01t0101700-00;Name=Os01t0101700-00.exon2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0101700-00.exon2;rank=2 +1 irgsp three_prime_UTR 83865 84095 . + . Parent=transcript:Os01t0101700-00 +### +1 irgsp gene 85337 88844 . + . ID=gene:Os01g0101800;biotype=protein_coding;description=Conserved hypothetical protein. (Os01t0101800-01);gene_id=Os01g0101800;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 85337 88844 . + . ID=transcript:Os01t0101800-01;Parent=gene:Os01g0101800;biotype=protein_coding;transcript_id=Os01t0101800-01 +1 irgsp five_prime_UTR 85337 85378 . + . Parent=transcript:Os01t0101800-01 +1 irgsp exon 85337 85600 . + . Parent=transcript:Os01t0101800-01;Name=Os01t0101800-01.exon1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0101800-01.exon1;rank=1 +1 irgsp CDS 85379 85600 . + 0 ID=CDS:Os01t0101800-01;Parent=transcript:Os01t0101800-01;protein_id=Os01t0101800-01 +1 irgsp exon 85737 85830 . + . Parent=transcript:Os01t0101800-01;Name=Os01t0101800-01.exon2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0101800-01.exon2;rank=2 +1 irgsp CDS 85737 85830 . + 0 ID=CDS:Os01t0101800-01;Parent=transcript:Os01t0101800-01;protein_id=Os01t0101800-01 +1 irgsp exon 85935 86086 . + . Parent=transcript:Os01t0101800-01;Name=Os01t0101800-01.exon3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0101800-01.exon3;rank=3 +1 irgsp CDS 85935 86086 . + 2 ID=CDS:Os01t0101800-01;Parent=transcript:Os01t0101800-01;protein_id=Os01t0101800-01 +1 irgsp exon 86212 86299 . + . Parent=transcript:Os01t0101800-01;Name=Os01t0101800-01.exon4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0101800-01.exon4;rank=4 +1 irgsp CDS 86212 86299 . + 0 ID=CDS:Os01t0101800-01;Parent=transcript:Os01t0101800-01;protein_id=Os01t0101800-01 +1 irgsp exon 86399 87681 . + . Parent=transcript:Os01t0101800-01;Name=Os01t0101800-01.exon5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0101800-01.exon5;rank=5 +1 irgsp CDS 86399 87681 . + 2 ID=CDS:Os01t0101800-01;Parent=transcript:Os01t0101800-01;protein_id=Os01t0101800-01 +1 irgsp exon 88291 88398 . + . Parent=transcript:Os01t0101800-01;Name=Os01t0101800-01.exon6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0101800-01.exon6;rank=6 +1 irgsp CDS 88291 88398 . + 0 ID=CDS:Os01t0101800-01;Parent=transcript:Os01t0101800-01;protein_id=Os01t0101800-01 +1 irgsp CDS 88500 88583 . + 0 ID=CDS:Os01t0101800-01;Parent=transcript:Os01t0101800-01;protein_id=Os01t0101800-01 +1 irgsp exon 88500 88844 . + . Parent=transcript:Os01t0101800-01;Name=Os01t0101800-01.exon7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0101800-01.exon7;rank=7 +1 irgsp three_prime_UTR 88584 88844 . + . Parent=transcript:Os01t0101800-01 +### +1 irgsp gene 86211 88583 . - . ID=gene:Os01g0101850;biotype=protein_coding;description=Hypothetical protein. (Os01t0101850-00);gene_id=Os01g0101850;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 86211 88583 . - . ID=transcript:Os01t0101850-00;Parent=gene:Os01g0101850;biotype=protein_coding;transcript_id=Os01t0101850-00 +1 irgsp exon 86211 86277 . - . Parent=transcript:Os01t0101850-00;Name=Os01t0101850-00.exon4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0101850-00.exon4;rank=4 +1 irgsp three_prime_UTR 86211 86277 . - . Parent=transcript:Os01t0101850-00 +1 irgsp three_prime_UTR 86384 87326 . - . Parent=transcript:Os01t0101850-00 +1 irgsp exon 86384 87694 . - . Parent=transcript:Os01t0101850-00;Name=Os01t0101850-00.exon3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0101850-00.exon3;rank=3 +1 irgsp CDS 87327 87662 . - 0 ID=CDS:Os01t0101850-00;Parent=transcript:Os01t0101850-00;protein_id=Os01t0101850-00 +1 irgsp five_prime_UTR 87663 87694 . - . Parent=transcript:Os01t0101850-00 +1 irgsp exon 88308 88396 . - . Parent=transcript:Os01t0101850-00;Name=Os01t0101850-00.exon2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0101850-00.exon2;rank=2 +1 irgsp five_prime_UTR 88308 88396 . - . Parent=transcript:Os01t0101850-00 +1 irgsp exon 88496 88583 . - . Parent=transcript:Os01t0101850-00;Name=Os01t0101850-00.exon1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0101850-00.exon1;rank=1 +1 irgsp five_prime_UTR 88496 88583 . - . Parent=transcript:Os01t0101850-00 +### +1 irgsp gene 88883 89228 . - . ID=gene:Os01g0101900;biotype=protein_coding;description=Similar to OSIGBa0075F02.3 protein. (Os01t0101900-00);gene_id=Os01g0101900;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 88883 89228 . - . ID=transcript:Os01t0101900-00;Parent=gene:Os01g0101900;biotype=protein_coding;transcript_id=Os01t0101900-00 +1 irgsp three_prime_UTR 88883 88985 . - . Parent=transcript:Os01t0101900-00 +1 irgsp exon 88883 89228 . - . Parent=transcript:Os01t0101900-00;Name=Os01t0101900-00.exon1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0101900-00.exon1;rank=1 +1 irgsp CDS 88986 89204 . - 0 ID=CDS:Os01t0101900-00;Parent=transcript:Os01t0101900-00;protein_id=Os01t0101900-00 +1 irgsp five_prime_UTR 89205 89228 . - . Parent=transcript:Os01t0101900-00 +### +1 irgsp gene 89763 91465 . - . ID=gene:Os01g0102000;Name=NON-SPECIFIC PHOSPHOLIPASE C5;biotype=protein_coding;description=Phosphoesterase family protein. (Os01t0102000-01);gene_id=Os01g0102000;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 89763 91465 . - . ID=transcript:Os01t0102000-01;Parent=gene:Os01g0102000;biotype=protein_coding;transcript_id=Os01t0102000-01 +1 irgsp three_prime_UTR 89763 89824 . - . Parent=transcript:Os01t0102000-01 +1 irgsp exon 89763 91465 . - . Parent=transcript:Os01t0102000-01;Name=Os01t0102000-01.exon1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0102000-01.exon1;rank=1 +1 irgsp CDS 89825 91411 . - 0 ID=CDS:Os01t0102000-01;Parent=transcript:Os01t0102000-01;protein_id=Os01t0102000-01 +1 irgsp five_prime_UTR 91412 91465 . - . Parent=transcript:Os01t0102000-01 +### +1 irgsp gene 134300 135439 . + . ID=gene:Os01g0102300;Name=OsTLP27;biotype=protein_coding;description=Thylakoid lumen protein%2C Photosynthesis and chloroplast development (Os01t0102300-01);gene_id=Os01g0102300;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 134300 135439 . + . ID=transcript:Os01t0102300-01;Parent=gene:Os01g0102300;biotype=protein_coding;transcript_id=Os01t0102300-01 +1 irgsp five_prime_UTR 134300 134310 . + . Parent=transcript:Os01t0102300-01 +1 irgsp exon 134300 134615 . + . Parent=transcript:Os01t0102300-01;Name=Os01t0102300-01.exon1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0102300-01.exon1;rank=1 +1 irgsp CDS 134311 134615 . + 0 ID=CDS:Os01t0102300-01;Parent=transcript:Os01t0102300-01;protein_id=Os01t0102300-01 +1 irgsp exon 134698 134824 . + . Parent=transcript:Os01t0102300-01;Name=Os01t0102300-01.exon2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0102300-01.exon2;rank=2 +1 irgsp CDS 134698 134824 . + 1 ID=CDS:Os01t0102300-01;Parent=transcript:Os01t0102300-01;protein_id=Os01t0102300-01 +1 irgsp CDS 134912 135253 . + 0 ID=CDS:Os01t0102300-01;Parent=transcript:Os01t0102300-01;protein_id=Os01t0102300-01 +1 irgsp exon 134912 135439 . + . Parent=transcript:Os01t0102300-01;Name=Os01t0102300-01.exon3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0102300-01.exon3;rank=3 +1 irgsp three_prime_UTR 135254 135439 . + . Parent=transcript:Os01t0102300-01 +### +1 irgsp gene 139826 141555 . + . ID=gene:Os01g0102400;Name=HAP5H SUBUNIT OF CCAAT-BOX BINDING COMPLEX;biotype=protein_coding;description=Histone-fold domain containing protein. (Os01t0102400-01);gene_id=Os01g0102400;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 139826 141555 . + . ID=transcript:Os01t0102400-01;Parent=gene:Os01g0102400;biotype=protein_coding;transcript_id=Os01t0102400-01 +1 irgsp exon 139826 139906 . + . Parent=transcript:Os01t0102400-01;Name=Os01t0102400-01.exon1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0102400-01.exon1;rank=1 +1 irgsp five_prime_UTR 139826 139906 . + . Parent=transcript:Os01t0102400-01 +1 irgsp five_prime_UTR 140120 140149 . + . Parent=transcript:Os01t0102400-01 +1 irgsp exon 140120 141555 . + . Parent=transcript:Os01t0102400-01;Name=Os01t0102400-01.exon2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0102400-01.exon2;rank=2 +1 irgsp CDS 140150 141415 . + 0 ID=CDS:Os01t0102400-01;Parent=transcript:Os01t0102400-01;protein_id=Os01t0102400-01 +1 irgsp three_prime_UTR 141416 141555 . + . Parent=transcript:Os01t0102400-01 +### +1 irgsp gene 141959 144554 . + . ID=gene:Os01g0102500;biotype=protein_coding;description=Conserved hypothetical protein. (Os01t0102500-01);gene_id=Os01g0102500;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 141959 144554 . + . ID=transcript:Os01t0102500-01;Parent=gene:Os01g0102500;biotype=protein_coding;transcript_id=Os01t0102500-01 +1 irgsp five_prime_UTR 141959 142083 . + . Parent=transcript:Os01t0102500-01 +1 irgsp exon 141959 142631 . + . Parent=transcript:Os01t0102500-01;Name=Os01t0102500-01.exon1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0102500-01.exon1;rank=1 +1 irgsp CDS 142084 142631 . + 0 ID=CDS:Os01t0102500-01;Parent=transcript:Os01t0102500-01;protein_id=Os01t0102500-01 +1 irgsp exon 143191 143431 . + . Parent=transcript:Os01t0102500-01;Name=Os01t0102500-01.exon2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0102500-01.exon2;rank=2 +1 irgsp CDS 143191 143431 . + 1 ID=CDS:Os01t0102500-01;Parent=transcript:Os01t0102500-01;protein_id=Os01t0102500-01 +1 irgsp exon 143563 143680 . + . Parent=transcript:Os01t0102500-01;Name=Os01t0102500-01.exon3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0102500-01.exon3;rank=3 +1 irgsp CDS 143563 143680 . + 0 ID=CDS:Os01t0102500-01;Parent=transcript:Os01t0102500-01;protein_id=Os01t0102500-01 +1 irgsp CDS 143817 143908 . + 2 ID=CDS:Os01t0102500-01;Parent=transcript:Os01t0102500-01;protein_id=Os01t0102500-01 +1 irgsp exon 143817 144554 . + . Parent=transcript:Os01t0102500-01;Name=Os01t0102500-01.exon4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0102500-01.exon4;rank=4 +1 irgsp three_prime_UTR 143909 144554 . + . Parent=transcript:Os01t0102500-01 +### +1 irgsp gene 145603 147847 . + . ID=gene:Os01g0102600;Name=Shikimate kinase 4;biotype=protein_coding;description=Shikimate kinase domain containing protein. (Os01t0102600-01)%3BSimilar to shikimate kinase family protein. (Os01t0102600-02);gene_id=Os01g0102600;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 145603 147847 . + . ID=transcript:Os01t0102600-01;Parent=gene:Os01g0102600;biotype=protein_coding;transcript_id=Os01t0102600-01 +1 irgsp five_prime_UTR 145603 145644 . + . Parent=transcript:Os01t0102600-01 +1 irgsp exon 145603 145786 . + . Parent=transcript:Os01t0102600-01;Name=Os01t0102600-01.exon1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0102600-01.exon1;rank=1 +1 irgsp CDS 145645 145786 . + 0 ID=CDS:Os01t0102600-01;Parent=transcript:Os01t0102600-01;protein_id=Os01t0102600-01 +1 irgsp exon 145905 145951 . + . Parent=transcript:Os01t0102600-01;Name=Os01t0102600-01.exon2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0102600-01.exon2;rank=2 +1 irgsp CDS 145905 145951 . + 2 ID=CDS:Os01t0102600-01;Parent=transcript:Os01t0102600-01;protein_id=Os01t0102600-01 +1 irgsp exon 146028 146082 . + . Parent=transcript:Os01t0102600-01;Name=Os01t0102600-01.exon3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0102600-01.exon3;rank=3 +1 irgsp CDS 146028 146082 . + 0 ID=CDS:Os01t0102600-01;Parent=transcript:Os01t0102600-01;protein_id=Os01t0102600-01 +1 irgsp exon 146179 146339 . + . Parent=transcript:Os01t0102600-01;Name=Os01t0102600-01.exon4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0102600-01.exon4;rank=4 +1 irgsp CDS 146179 146339 . + 2 ID=CDS:Os01t0102600-01;Parent=transcript:Os01t0102600-01;protein_id=Os01t0102600-01 +1 irgsp exon 146450 146532 . + . Parent=transcript:Os01t0102600-01;Name=Os01t0102600-01.exon5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0102600-01.exon5;rank=5 +1 irgsp CDS 146450 146532 . + 0 ID=CDS:Os01t0102600-01;Parent=transcript:Os01t0102600-01;protein_id=Os01t0102600-01 +1 irgsp exon 146611 146719 . + . Parent=transcript:Os01t0102600-01;Name=Os01t0102600-01.exon6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0102600-01.exon6;rank=6 +1 irgsp CDS 146611 146719 . + 1 ID=CDS:Os01t0102600-01;Parent=transcript:Os01t0102600-01;protein_id=Os01t0102600-01 +1 irgsp exon 147106 147184 . + . Parent=transcript:Os01t0102600-01;Name=Os01t0102600-01.exon7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0102600-01.exon7;rank=7 +1 irgsp CDS 147106 147184 . + 0 ID=CDS:Os01t0102600-01;Parent=transcript:Os01t0102600-01;protein_id=Os01t0102600-01 +1 irgsp exon 147311 147375 . + . Parent=transcript:Os01t0102600-01;Name=Os01t0102600-02.exon2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0102600-02.exon2;rank=8 +1 irgsp CDS 147311 147375 . + 2 ID=CDS:Os01t0102600-01;Parent=transcript:Os01t0102600-01;protein_id=Os01t0102600-01 +1 irgsp CDS 147507 147575 . + 0 ID=CDS:Os01t0102600-01;Parent=transcript:Os01t0102600-01;protein_id=Os01t0102600-01 +1 irgsp exon 147507 147847 . + . Parent=transcript:Os01t0102600-01;Name=Os01t0102600-01.exon9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0102600-01.exon9;rank=9 +1 irgsp three_prime_UTR 147576 147847 . + . Parent=transcript:Os01t0102600-01 +1 irgsp mRNA 147104 147805 . + . ID=transcript:Os01t0102600-02;Parent=gene:Os01g0102600;biotype=protein_coding;transcript_id=Os01t0102600-02 +1 irgsp five_prime_UTR 147104 147105 . + . Parent=transcript:Os01t0102600-02 +1 irgsp exon 147104 147184 . + . Parent=transcript:Os01t0102600-02;Name=Os01t0102600-02.exon1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0102600-02.exon1;rank=1 +1 irgsp CDS 147106 147184 . + 0 ID=CDS:Os01t0102600-02;Parent=transcript:Os01t0102600-02;protein_id=Os01t0102600-02 +1 irgsp exon 147311 147375 . + . Parent=transcript:Os01t0102600-02;Name=Os01t0102600-02.exon2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0102600-02.exon2;rank=2 +1 irgsp CDS 147311 147375 . + 2 ID=CDS:Os01t0102600-02;Parent=transcript:Os01t0102600-02;protein_id=Os01t0102600-02 +1 irgsp CDS 147507 147575 . + 0 ID=CDS:Os01t0102600-02;Parent=transcript:Os01t0102600-02;protein_id=Os01t0102600-02 +1 irgsp exon 147507 147805 . + . Parent=transcript:Os01t0102600-02;Name=Os01t0102600-02.exon3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0102600-02.exon3;rank=3 +1 irgsp three_prime_UTR 147576 147805 . + . Parent=transcript:Os01t0102600-02 +### +1 irgsp gene 148085 150568 . + . ID=gene:Os01g0102700;biotype=protein_coding;description=Translocon-associated beta family protein. (Os01t0102700-01);gene_id=Os01g0102700;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 148085 150568 . + . ID=transcript:Os01t0102700-01;Parent=gene:Os01g0102700;biotype=protein_coding;transcript_id=Os01t0102700-01 +1 irgsp five_prime_UTR 148085 148146 . + . Parent=transcript:Os01t0102700-01 +1 irgsp exon 148085 148313 . + . Parent=transcript:Os01t0102700-01;Name=Os01t0102700-01.exon1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0102700-01.exon1;rank=1 +1 irgsp CDS 148147 148313 . + 0 ID=CDS:Os01t0102700-01;Parent=transcript:Os01t0102700-01;protein_id=Os01t0102700-01 +1 irgsp exon 149450 149548 . + . Parent=transcript:Os01t0102700-01;Name=Os01t0102700-01.exon2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0102700-01.exon2;rank=2 +1 irgsp CDS 149450 149548 . + 1 ID=CDS:Os01t0102700-01;Parent=transcript:Os01t0102700-01;protein_id=Os01t0102700-01 +1 irgsp exon 149634 149742 . + . Parent=transcript:Os01t0102700-01;Name=Os01t0102700-01.exon3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0102700-01.exon3;rank=3 +1 irgsp CDS 149634 149742 . + 1 ID=CDS:Os01t0102700-01;Parent=transcript:Os01t0102700-01;protein_id=Os01t0102700-01 +1 irgsp exon 149856 149931 . + . Parent=transcript:Os01t0102700-01;Name=Os01t0102700-01.exon4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0102700-01.exon4;rank=4 +1 irgsp CDS 149856 149931 . + 0 ID=CDS:Os01t0102700-01;Parent=transcript:Os01t0102700-01;protein_id=Os01t0102700-01 +1 irgsp CDS 150152 150318 . + 2 ID=CDS:Os01t0102700-01;Parent=transcript:Os01t0102700-01;protein_id=Os01t0102700-01 +1 irgsp exon 150152 150568 . + . Parent=transcript:Os01t0102700-01;Name=Os01t0102700-01.exon5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0102700-01.exon5;rank=5 +1 irgsp three_prime_UTR 150319 150568 . + . Parent=transcript:Os01t0102700-01 +### +1 irgsp gene 152853 156449 . + . ID=gene:Os01g0102800;Name=Cockayne syndrome WD-repeat protein;biotype=protein_coding;description=Similar to chromatin remodeling complex subunit. (Os01t0102800-01);gene_id=Os01g0102800;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 152853 156449 . + . ID=transcript:Os01t0102800-01;Parent=gene:Os01g0102800;biotype=protein_coding;transcript_id=Os01t0102800-01 +1 irgsp five_prime_UTR 152853 152853 . + . Parent=transcript:Os01t0102800-01 +1 irgsp exon 152853 153025 . + . Parent=transcript:Os01t0102800-01;Name=Os01t0102800-01.exon1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0102800-01.exon1;rank=1 +1 irgsp CDS 152854 153025 . + 0 ID=CDS:Os01t0102800-01;Parent=transcript:Os01t0102800-01;protein_id=Os01t0102800-01 +1 irgsp exon 153178 154646 . + . Parent=transcript:Os01t0102800-01;Name=Os01t0102800-01.exon2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0102800-01.exon2;rank=2 +1 irgsp CDS 153178 154646 . + 2 ID=CDS:Os01t0102800-01;Parent=transcript:Os01t0102800-01;protein_id=Os01t0102800-01 +1 irgsp exon 155010 155450 . + . Parent=transcript:Os01t0102800-01;Name=Os01t0102800-01.exon3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0102800-01.exon3;rank=3 +1 irgsp CDS 155010 155450 . + 0 ID=CDS:Os01t0102800-01;Parent=transcript:Os01t0102800-01;protein_id=Os01t0102800-01 +1 irgsp CDS 155543 156214 . + 0 ID=CDS:Os01t0102800-01;Parent=transcript:Os01t0102800-01;protein_id=Os01t0102800-01 +1 irgsp exon 155543 156449 . + . Parent=transcript:Os01t0102800-01;Name=Os01t0102800-01.exon4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0102800-01.exon4;rank=4 +1 irgsp three_prime_UTR 156215 156449 . + . Parent=transcript:Os01t0102800-01 +### +1 irgsp gene 164577 168921 . + . ID=gene:Os01g0102850;biotype=protein_coding;description=Similar to nitrilase 2. (Os01t0102850-00);gene_id=Os01g0102850;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 164577 168921 . + . ID=transcript:Os01t0102850-00;Parent=gene:Os01g0102850;biotype=protein_coding;transcript_id=Os01t0102850-00 +1 irgsp exon 164577 164905 . + . Parent=transcript:Os01t0102850-00;Name=Os01t0102850-00.exon1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0102850-00.exon1;rank=1 +1 irgsp five_prime_UTR 164577 164905 . + . Parent=transcript:Os01t0102850-00 +1 irgsp five_prime_UTR 168499 168804 . + . Parent=transcript:Os01t0102850-00 +1 irgsp exon 168499 168921 . + . Parent=transcript:Os01t0102850-00;Name=Os01t0102850-00.exon2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0102850-00.exon2;rank=2 +1 irgsp CDS 168805 168921 . + 0 ID=CDS:Os01t0102850-00;Parent=transcript:Os01t0102850-00;protein_id=Os01t0102850-00 +### +1 irgsp gene 169390 170316 . - . ID=gene:Os01g0102900;Name=LIGHT-REGULATED GENE 1;biotype=protein_coding;description=Light-regulated protein%2C Regulation of light-dependent attachment of LEAF-TYPE FERREDOXIN-NADP+ OXIDOREDUCTASE (LFNR) to the thylakoid membrane (Os01t0102900-01);gene_id=Os01g0102900;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 169390 170316 . - . ID=transcript:Os01t0102900-01;Parent=gene:Os01g0102900;biotype=protein_coding;transcript_id=Os01t0102900-01 +1 irgsp three_prime_UTR 169390 169598 . - . Parent=transcript:Os01t0102900-01 +1 irgsp exon 169390 169656 . - . Parent=transcript:Os01t0102900-01;Name=Os01t0102900-01.exon3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0102900-01.exon3;rank=3 +1 irgsp CDS 169599 169656 . - 1 ID=CDS:Os01t0102900-01;Parent=transcript:Os01t0102900-01;protein_id=Os01t0102900-01 +1 irgsp exon 169751 169909 . - . Parent=transcript:Os01t0102900-01;Name=Os01t0102900-01.exon2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0102900-01.exon2;rank=2 +1 irgsp CDS 169751 169909 . - 1 ID=CDS:Os01t0102900-01;Parent=transcript:Os01t0102900-01;protein_id=Os01t0102900-01 +1 irgsp CDS 170091 170260 . - 0 ID=CDS:Os01t0102900-01;Parent=transcript:Os01t0102900-01;protein_id=Os01t0102900-01 +1 irgsp exon 170091 170316 . - . Parent=transcript:Os01t0102900-01;Name=Os01t0102900-01.exon1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0102900-01.exon1;rank=1 +1 irgsp five_prime_UTR 170261 170316 . - . Parent=transcript:Os01t0102900-01 +### +1 irgsp gene 170798 173144 . - . ID=gene:Os01g0103000;biotype=protein_coding;description=Snf7 family protein. (Os01t0103000-01);gene_id=Os01g0103000;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 170798 173144 . - . ID=transcript:Os01t0103000-01;Parent=gene:Os01g0103000;biotype=protein_coding;transcript_id=Os01t0103000-01 +1 irgsp three_prime_UTR 170798 171044 . - . Parent=transcript:Os01t0103000-01 +1 irgsp exon 170798 171095 . - . Parent=transcript:Os01t0103000-01;Name=Os01t0103000-01.exon7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0103000-01.exon7;rank=7 +1 irgsp CDS 171045 171095 . - 0 ID=CDS:Os01t0103000-01;Parent=transcript:Os01t0103000-01;protein_id=Os01t0103000-01 +1 irgsp exon 171406 171554 . - . Parent=transcript:Os01t0103000-01;Name=Os01t0103000-01.exon6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0103000-01.exon6;rank=6 +1 irgsp CDS 171406 171554 . - 2 ID=CDS:Os01t0103000-01;Parent=transcript:Os01t0103000-01;protein_id=Os01t0103000-01 +1 irgsp exon 171764 171875 . - . Parent=transcript:Os01t0103000-01;Name=Os01t0103000-01.exon5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0103000-01.exon5;rank=5 +1 irgsp CDS 171764 171875 . - 0 ID=CDS:Os01t0103000-01;Parent=transcript:Os01t0103000-01;protein_id=Os01t0103000-01 +1 irgsp exon 172398 172469 . - . Parent=transcript:Os01t0103000-01;Name=Os01t0103000-01.exon4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0103000-01.exon4;rank=4 +1 irgsp CDS 172398 172469 . - 0 ID=CDS:Os01t0103000-01;Parent=transcript:Os01t0103000-01;protein_id=Os01t0103000-01 +1 irgsp exon 172578 172671 . - . Parent=transcript:Os01t0103000-01;Name=Os01t0103000-01.exon3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0103000-01.exon3;rank=3 +1 irgsp CDS 172578 172671 . - 1 ID=CDS:Os01t0103000-01;Parent=transcript:Os01t0103000-01;protein_id=Os01t0103000-01 +1 irgsp exon 172770 172921 . - . Parent=transcript:Os01t0103000-01;Name=Os01t0103000-01.exon2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0103000-01.exon2;rank=2 +1 irgsp CDS 172770 172921 . - 0 ID=CDS:Os01t0103000-01;Parent=transcript:Os01t0103000-01;protein_id=Os01t0103000-01 +1 irgsp CDS 173004 173072 . - 0 ID=CDS:Os01t0103000-01;Parent=transcript:Os01t0103000-01;protein_id=Os01t0103000-01 +1 irgsp exon 173004 173144 . - . Parent=transcript:Os01t0103000-01;Name=Os01t0103000-01.exon1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0103000-01.exon1;rank=1 +1 irgsp five_prime_UTR 173073 173144 . - . Parent=transcript:Os01t0103000-01 +### +1 irgsp gene 178607 180575 . + . ID=gene:Os01g0103100;biotype=protein_coding;description=TGF-beta receptor%2C type I/II extracellular region family protein. (Os01t0103100-01)%3BSimilar to predicted protein. (Os01t0103100-02);gene_id=Os01g0103100;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 178607 180548 . + . ID=transcript:Os01t0103100-01;Parent=gene:Os01g0103100;biotype=protein_coding;transcript_id=Os01t0103100-01 +1 irgsp five_prime_UTR 178607 178641 . + . Parent=transcript:Os01t0103100-01 +1 irgsp exon 178607 180548 . + . Parent=transcript:Os01t0103100-01;Name=Os01t0103100-01.exon1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0103100-01.exon1;rank=1 +1 irgsp CDS 178642 180462 . + 0 ID=CDS:Os01t0103100-01;Parent=transcript:Os01t0103100-01;protein_id=Os01t0103100-01 +1 irgsp three_prime_UTR 180463 180548 . + . Parent=transcript:Os01t0103100-01 +1 irgsp mRNA 178652 180575 . + . ID=transcript:Os01t0103100-02;Parent=gene:Os01g0103100;biotype=protein_coding;transcript_id=Os01t0103100-02 +1 irgsp five_prime_UTR 178652 178677 . + . Parent=transcript:Os01t0103100-02 +1 irgsp exon 178652 180575 . + . Parent=transcript:Os01t0103100-02;Name=Os01t0103100-02.exon1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0103100-02.exon1;rank=1 +1 irgsp CDS 178678 180462 . + 0 ID=CDS:Os01t0103100-02;Parent=transcript:Os01t0103100-02;protein_id=Os01t0103100-02 +1 irgsp three_prime_UTR 180463 180575 . + . Parent=transcript:Os01t0103100-02 +### +1 irgsp gene 178815 180433 . - . ID=gene:Os01g0103075;biotype=protein_coding;description=Hypothetical protein. (Os01t0103075-00);gene_id=Os01g0103075;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 178815 180433 . - . ID=transcript:Os01t0103075-00;Parent=gene:Os01g0103075;biotype=protein_coding;transcript_id=Os01t0103075-00 +1 irgsp three_prime_UTR 178815 179511 . - . Parent=transcript:Os01t0103075-00 +1 irgsp exon 178815 180433 . - . Parent=transcript:Os01t0103075-00;Name=Os01t0103075-00.exon1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0103075-00.exon1;rank=1 +1 irgsp CDS 179512 180054 . - 0 ID=CDS:Os01t0103075-00;Parent=transcript:Os01t0103075-00;protein_id=Os01t0103075-00 +1 irgsp five_prime_UTR 180055 180433 . - . Parent=transcript:Os01t0103075-00 +### +1 Ensembl_Plants ncRNA_gene 182074 182154 . + . ID=gene:ENSRNA049442722;Name=tRNA-Leu;biotype=tRNA;description=tRNA-Leu for anticodon AAG;gene_id=ENSRNA049442722;logic_name=trnascan_gene +1 Ensembl_Plants tRNA 182074 182154 . + . ID=transcript:ENSRNA049442722-T1;Parent=gene:ENSRNA049442722;biotype=tRNA;transcript_id=ENSRNA049442722-T1 +1 Ensembl_Plants exon 182074 182154 . + . Parent=transcript:ENSRNA049442722-T1;Name=ENSRNA049442722-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSRNA049442722-E1;rank=1 +### +1 irgsp gene 185189 185828 . - . ID=gene:Os01g0103400;biotype=protein_coding;description=Hypothetical gene. (Os01t0103400-01);gene_id=Os01g0103400;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 185189 185828 . - . ID=transcript:Os01t0103400-01;Parent=gene:Os01g0103400;biotype=protein_coding;transcript_id=Os01t0103400-01 +1 irgsp three_prime_UTR 185189 185434 . - . Parent=transcript:Os01t0103400-01 +1 irgsp exon 185189 185828 . - . Parent=transcript:Os01t0103400-01;Name=Os01t0103400-01.exon1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0103400-01.exon1;rank=1 +1 irgsp CDS 185435 185827 . - 0 ID=CDS:Os01t0103400-01;Parent=transcript:Os01t0103400-01;protein_id=Os01t0103400-01 +1 irgsp five_prime_UTR 185828 185828 . - . Parent=transcript:Os01t0103400-01 +### +1 irgsp repeat_region 186000 186100 . + . ID=fakeRepeat2 +### +1 irgsp gene 186250 190904 . - . ID=gene:Os01g0103600;biotype=protein_coding;description=Similar to sterol-8%2C7-isomerase. (Os01t0103600-01)%3BEmopamil-binding family protein. (Os01t0103600-02);gene_id=Os01g0103600;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 186250 190262 . - . ID=transcript:Os01t0103600-02;Parent=gene:Os01g0103600;biotype=protein_coding;transcript_id=Os01t0103600-02 +1 irgsp three_prime_UTR 186250 186515 . - . Parent=transcript:Os01t0103600-02 +1 irgsp exon 186250 186771 . - . Parent=transcript:Os01t0103600-02;Name=Os01t0103600-02.exon4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0103600-02.exon4;rank=4 +1 irgsp CDS 186516 186771 . - 1 ID=CDS:Os01t0103600-02;Parent=transcript:Os01t0103600-02;protein_id=Os01t0103600-02 +1 irgsp exon 189607 189715 . - . Parent=transcript:Os01t0103600-02;Name=Os01t0103600-02.exon3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0103600-02.exon3;rank=3 +1 irgsp CDS 189607 189715 . - 2 ID=CDS:Os01t0103600-02;Parent=transcript:Os01t0103600-02;protein_id=Os01t0103600-02 +1 irgsp exon 189841 189990 . - . Parent=transcript:Os01t0103600-02;Name=Os01t0103600-02.exon2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0103600-02.exon2;rank=2 +1 irgsp CDS 189841 189990 . - 2 ID=CDS:Os01t0103600-02;Parent=transcript:Os01t0103600-02;protein_id=Os01t0103600-02 +1 irgsp CDS 190087 190231 . - 0 ID=CDS:Os01t0103600-02;Parent=transcript:Os01t0103600-02;protein_id=Os01t0103600-02 +1 irgsp exon 190087 190262 . - . Parent=transcript:Os01t0103600-02;Name=Os01t0103600-02.exon1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0103600-02.exon1;rank=1 +1 irgsp five_prime_UTR 190232 190262 . - . Parent=transcript:Os01t0103600-02 +1 irgsp mRNA 187345 190904 . - . ID=transcript:Os01t0103600-01;Parent=gene:Os01g0103600;biotype=protein_coding;transcript_id=Os01t0103600-01 +1 irgsp three_prime_UTR 187345 189395 . - . Parent=transcript:Os01t0103600-01 +1 irgsp exon 187345 189715 . - . Parent=transcript:Os01t0103600-01;Name=Os01t0103600-01.exon3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0103600-01.exon3;rank=3 +1 irgsp CDS 189396 189715 . - 2 ID=CDS:Os01t0103600-01;Parent=transcript:Os01t0103600-01;protein_id=Os01t0103600-01 +1 irgsp exon 189841 189990 . - . Parent=transcript:Os01t0103600-01;Name=Os01t0103600-02.exon2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0103600-02.exon2;rank=2 +1 irgsp CDS 189841 189990 . - 2 ID=CDS:Os01t0103600-01;Parent=transcript:Os01t0103600-01;protein_id=Os01t0103600-01 +1 irgsp CDS 190087 190231 . - 0 ID=CDS:Os01t0103600-01;Parent=transcript:Os01t0103600-01;protein_id=Os01t0103600-01 +1 irgsp exon 190087 190904 . - . Parent=transcript:Os01t0103600-01;Name=Os01t0103600-01.exon1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0103600-01.exon1;rank=1 +1 irgsp five_prime_UTR 190232 190904 . - . Parent=transcript:Os01t0103600-01 +### +1 irgsp gene 187545 188586 . + . ID=gene:Os01g0103650;biotype=protein_coding;description=Hypothetical gene. (Os01t0103650-00);gene_id=Os01g0103650;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 187545 188586 . + . ID=transcript:Os01t0103650-00;Parent=gene:Os01g0103650;biotype=protein_coding;transcript_id=Os01t0103650-00 +1 irgsp five_prime_UTR 187545 187546 . + . Parent=transcript:Os01t0103650-00 +1 irgsp exon 187545 188020 . + . Parent=transcript:Os01t0103650-00;Name=Os01t0103650-00.exon1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0103650-00.exon1;rank=1 +1 irgsp CDS 187547 187768 . + 0 ID=CDS:Os01t0103650-00;Parent=transcript:Os01t0103650-00;protein_id=Os01t0103650-00 +1 irgsp three_prime_UTR 187769 188020 . + . Parent=transcript:Os01t0103650-00 +1 irgsp exon 188060 188385 . + . Parent=transcript:Os01t0103650-00;Name=Os01t0103650-00.exon2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0103650-00.exon2;rank=2 +1 irgsp three_prime_UTR 188060 188385 . + . Parent=transcript:Os01t0103650-00 +1 irgsp exon 188455 188586 . + . Parent=transcript:Os01t0103650-00;Name=Os01t0103650-00.exon3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0103650-00.exon3;rank=3 +1 irgsp three_prime_UTR 188455 188586 . + . Parent=transcript:Os01t0103650-00 +### +1 irgsp gene 191037 196287 . + . ID=gene:Os01g0103700;biotype=protein_coding;description=Conserved hypothetical protein. (Os01t0103700-01);gene_id=Os01g0103700;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 191037 196287 . + . ID=transcript:Os01t0103700-01;Parent=gene:Os01g0103700;biotype=protein_coding;transcript_id=Os01t0103700-01 +1 irgsp exon 191037 191161 . + . Parent=transcript:Os01t0103700-01;Name=Os01t0103700-01.exon1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0103700-01.exon1;rank=1 +1 irgsp five_prime_UTR 191037 191161 . + . Parent=transcript:Os01t0103700-01 +1 irgsp five_prime_UTR 191625 191693 . + . Parent=transcript:Os01t0103700-01 +1 irgsp exon 191625 191705 . + . Parent=transcript:Os01t0103700-01;Name=Os01t0103700-01.exon2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0103700-01.exon2;rank=2 +1 irgsp CDS 191694 191705 . + 0 ID=CDS:Os01t0103700-01;Parent=transcript:Os01t0103700-01;protein_id=Os01t0103700-01 +1 irgsp exon 192399 192506 . + . Parent=transcript:Os01t0103700-01;Name=Os01t0103700-01.exon3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0103700-01.exon3;rank=3 +1 irgsp CDS 192399 192506 . + 0 ID=CDS:Os01t0103700-01;Parent=transcript:Os01t0103700-01;protein_id=Os01t0103700-01 +1 irgsp exon 192958 193161 . + . Parent=transcript:Os01t0103700-01;Name=Os01t0103700-01.exon4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0103700-01.exon4;rank=4 +1 irgsp CDS 192958 193161 . + 0 ID=CDS:Os01t0103700-01;Parent=transcript:Os01t0103700-01;protein_id=Os01t0103700-01 +1 irgsp exon 193248 193356 . + . Parent=transcript:Os01t0103700-01;Name=Os01t0103700-01.exon5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0103700-01.exon5;rank=5 +1 irgsp CDS 193248 193356 . + 0 ID=CDS:Os01t0103700-01;Parent=transcript:Os01t0103700-01;protein_id=Os01t0103700-01 +1 irgsp CDS 193434 193507 . + 2 ID=CDS:Os01t0103700-01;Parent=transcript:Os01t0103700-01;protein_id=Os01t0103700-01 +1 irgsp exon 193434 196287 . + . Parent=transcript:Os01t0103700-01;Name=Os01t0103700-01.exon6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0103700-01.exon6;rank=6 +1 irgsp three_prime_UTR 193508 196287 . + . Parent=transcript:Os01t0103700-01 +### +1 irgsp gene 197647 200803 . + . ID=gene:Os01g0103800;Name=OsDW1-01g;biotype=protein_coding;description=Conserved hypothetical protein. (Os01t0103800-01);gene_id=Os01g0103800;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 197647 200803 . + . ID=transcript:Os01t0103800-01;Parent=gene:Os01g0103800;biotype=protein_coding;transcript_id=Os01t0103800-01 +1 irgsp exon 197647 197838 . + . Parent=transcript:Os01t0103800-01;Name=Os01t0103800-01.exon1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0103800-01.exon1;rank=1 +1 irgsp five_prime_UTR 197647 197838 . + . Parent=transcript:Os01t0103800-01 +1 irgsp five_prime_UTR 198034 198129 . + . Parent=transcript:Os01t0103800-01 +1 irgsp exon 198034 198225 . + . Parent=transcript:Os01t0103800-01;Name=Os01t0103800-01.exon2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0103800-01.exon2;rank=2 +1 irgsp CDS 198130 198225 . + 0 ID=CDS:Os01t0103800-01;Parent=transcript:Os01t0103800-01;protein_id=Os01t0103800-01 +1 irgsp exon 198830 200036 . + . Parent=transcript:Os01t0103800-01;Name=Os01t0103800-01.exon3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0103800-01.exon3;rank=3 +1 irgsp CDS 198830 200036 . + 0 ID=CDS:Os01t0103800-01;Parent=transcript:Os01t0103800-01;protein_id=Os01t0103800-01 +1 irgsp CDS 200253 200479 . + 2 ID=CDS:Os01t0103800-01;Parent=transcript:Os01t0103800-01;protein_id=Os01t0103800-01 +1 irgsp exon 200253 200803 . + . Parent=transcript:Os01t0103800-01;Name=Os01t0103800-01.exon4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0103800-01.exon4;rank=4 +1 irgsp three_prime_UTR 200480 200803 . + . Parent=transcript:Os01t0103800-01 +### +1 irgsp gene 201944 206202 . + . ID=gene:Os01g0103900;biotype=protein_coding;description=Polynucleotidyl transferase%2C Ribonuclease H fold domain containing protein. (Os01t0103900-01);gene_id=Os01g0103900;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 201944 206202 . + . ID=transcript:Os01t0103900-01;Parent=gene:Os01g0103900;biotype=protein_coding;transcript_id=Os01t0103900-01 +1 irgsp five_prime_UTR 201944 202041 . + . Parent=transcript:Os01t0103900-01 +1 irgsp exon 201944 202110 . + . Parent=transcript:Os01t0103900-01;Name=Os01t0103900-01.exon1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0103900-01.exon1;rank=1 +1 irgsp CDS 202042 202110 . + 0 ID=CDS:Os01t0103900-01;Parent=transcript:Os01t0103900-01;protein_id=Os01t0103900-01 +1 irgsp exon 202252 202359 . + . Parent=transcript:Os01t0103900-01;Name=Os01t0103900-01.exon2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0103900-01.exon2;rank=2 +1 irgsp CDS 202252 202359 . + 0 ID=CDS:Os01t0103900-01;Parent=transcript:Os01t0103900-01;protein_id=Os01t0103900-01 +1 irgsp exon 203007 203127 . + . Parent=transcript:Os01t0103900-01;Name=Os01t0103900-01.exon3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0103900-01.exon3;rank=3 +1 irgsp CDS 203007 203127 . + 0 ID=CDS:Os01t0103900-01;Parent=transcript:Os01t0103900-01;protein_id=Os01t0103900-01 +1 irgsp exon 203302 203429 . + . Parent=transcript:Os01t0103900-01;Name=Os01t0103900-01.exon4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0103900-01.exon4;rank=4 +1 irgsp CDS 203302 203429 . + 2 ID=CDS:Os01t0103900-01;Parent=transcript:Os01t0103900-01;protein_id=Os01t0103900-01 +1 irgsp exon 203511 203658 . + . Parent=transcript:Os01t0103900-01;Name=Os01t0103900-01.exon5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0103900-01.exon5;rank=5 +1 irgsp CDS 203511 203658 . + 0 ID=CDS:Os01t0103900-01;Parent=transcript:Os01t0103900-01;protein_id=Os01t0103900-01 +1 irgsp exon 203760 203938 . + . Parent=transcript:Os01t0103900-01;Name=Os01t0103900-01.exon6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0103900-01.exon6;rank=6 +1 irgsp CDS 203760 203938 . + 2 ID=CDS:Os01t0103900-01;Parent=transcript:Os01t0103900-01;protein_id=Os01t0103900-01 +1 irgsp exon 204203 204440 . + . Parent=transcript:Os01t0103900-01;Name=Os01t0103900-01.exon7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0103900-01.exon7;rank=7 +1 irgsp CDS 204203 204440 . + 0 ID=CDS:Os01t0103900-01;Parent=transcript:Os01t0103900-01;protein_id=Os01t0103900-01 +1 irgsp exon 204543 204635 . + . Parent=transcript:Os01t0103900-01;Name=Os01t0103900-01.exon8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0103900-01.exon8;rank=8 +1 irgsp CDS 204543 204635 . + 2 ID=CDS:Os01t0103900-01;Parent=transcript:Os01t0103900-01;protein_id=Os01t0103900-01 +1 irgsp exon 204730 204875 . + . Parent=transcript:Os01t0103900-01;Name=Os01t0103900-01.exon9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0103900-01.exon9;rank=9 +1 irgsp CDS 204730 204875 . + 2 ID=CDS:Os01t0103900-01;Parent=transcript:Os01t0103900-01;protein_id=Os01t0103900-01 +1 irgsp exon 205042 205149 . + . Parent=transcript:Os01t0103900-01;Name=Os01t0103900-01.exon10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0103900-01.exon10;rank=10 +1 irgsp CDS 205042 205149 . + 0 ID=CDS:Os01t0103900-01;Parent=transcript:Os01t0103900-01;protein_id=Os01t0103900-01 +1 irgsp exon 205290 205378 . + . Parent=transcript:Os01t0103900-01;Name=Os01t0103900-01.exon11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0103900-01.exon11;rank=11 +1 irgsp CDS 205290 205378 . + 0 ID=CDS:Os01t0103900-01;Parent=transcript:Os01t0103900-01;protein_id=Os01t0103900-01 +1 irgsp CDS 205534 205543 . + 1 ID=CDS:Os01t0103900-01;Parent=transcript:Os01t0103900-01;protein_id=Os01t0103900-01 +1 irgsp exon 205534 206202 . + . Parent=transcript:Os01t0103900-01;Name=Os01t0103900-01.exon12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0103900-01.exon12;rank=12 +1 irgsp three_prime_UTR 205544 206202 . + . Parent=transcript:Os01t0103900-01 +### +1 irgsp gene 206131 209606 . - . ID=gene:Os01g0104000;biotype=protein_coding;description=C-type lectin domain containing protein. (Os01t0104000-01)%3BSimilar to predicted protein. (Os01t0104000-02);gene_id=Os01g0104000;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 206131 209581 . - . ID=transcript:Os01t0104000-02;Parent=gene:Os01g0104000;biotype=protein_coding;transcript_id=Os01t0104000-02 +1 irgsp three_prime_UTR 206131 206449 . - . Parent=transcript:Os01t0104000-02 +1 irgsp exon 206131 207029 . - . Parent=transcript:Os01t0104000-02;Name=Os01t0104000-02.exon4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0104000-02.exon4;rank=4 +1 irgsp CDS 206450 207029 . - 1 ID=CDS:Os01t0104000-02;Parent=transcript:Os01t0104000-02;protein_id=Os01t0104000-02 +1 irgsp exon 207706 208273 . - . Parent=transcript:Os01t0104000-02;Name=Os01t0104000-02.exon3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0104000-02.exon3;rank=3 +1 irgsp CDS 207706 208273 . - 2 ID=CDS:Os01t0104000-02;Parent=transcript:Os01t0104000-02;protein_id=Os01t0104000-02 +1 irgsp exon 208408 208836 . - . Parent=transcript:Os01t0104000-02;Name=Os01t0104000-01.exon2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0104000-01.exon2;rank=2 +1 irgsp CDS 208408 208836 . - 2 ID=CDS:Os01t0104000-02;Parent=transcript:Os01t0104000-02;protein_id=Os01t0104000-02 +1 irgsp CDS 209438 209525 . - 0 ID=CDS:Os01t0104000-02;Parent=transcript:Os01t0104000-02;protein_id=Os01t0104000-02 +1 irgsp exon 209438 209581 . - . Parent=transcript:Os01t0104000-02;Name=Os01t0104000-02.exon1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0104000-02.exon1;rank=1 +1 irgsp five_prime_UTR 209526 209581 . - . Parent=transcript:Os01t0104000-02 +1 irgsp mRNA 206134 209606 . - . ID=transcript:Os01t0104000-01;Parent=gene:Os01g0104000;biotype=protein_coding;transcript_id=Os01t0104000-01 +1 irgsp three_prime_UTR 206134 206449 . - . Parent=transcript:Os01t0104000-01 +1 irgsp exon 206134 207029 . - . Parent=transcript:Os01t0104000-01;Name=Os01t0104000-01.exon4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0104000-01.exon4;rank=4 +1 irgsp CDS 206450 207029 . - 1 ID=CDS:Os01t0104000-01;Parent=transcript:Os01t0104000-01;protein_id=Os01t0104000-01 +1 irgsp exon 207706 208276 . - . Parent=transcript:Os01t0104000-01;Name=Os01t0104000-01.exon3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0104000-01.exon3;rank=3 +1 irgsp CDS 207706 208276 . - 2 ID=CDS:Os01t0104000-01;Parent=transcript:Os01t0104000-01;protein_id=Os01t0104000-01 +1 irgsp exon 208408 208836 . - . Parent=transcript:Os01t0104000-01;Name=Os01t0104000-01.exon2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0104000-01.exon2;rank=2 +1 irgsp CDS 208408 208836 . - 2 ID=CDS:Os01t0104000-01;Parent=transcript:Os01t0104000-01;protein_id=Os01t0104000-01 +1 irgsp CDS 209438 209525 . - 0 ID=CDS:Os01t0104000-01;Parent=transcript:Os01t0104000-01;protein_id=Os01t0104000-01 +1 irgsp exon 209438 209606 . - . Parent=transcript:Os01t0104000-01;Name=Os01t0104000-01.exon1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0104000-01.exon1;rank=1 +1 irgsp five_prime_UTR 209526 209606 . - . Parent=transcript:Os01t0104000-01 +### +1 irgsp gene 209771 214173 . + . ID=gene:Os01g0104100;Name=cold-inducible%2C cold-inducible zinc finger protein;biotype=protein_coding;description=Similar to protein binding / zinc ion binding. (Os01t0104100-01)%3BSimilar to protein binding / zinc ion binding. (Os01t0104100-02);gene_id=Os01g0104100;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 209771 214173 . + . ID=transcript:Os01t0104100-01;Parent=gene:Os01g0104100;biotype=protein_coding;transcript_id=Os01t0104100-01 +1 irgsp exon 209771 209896 . + . Parent=transcript:Os01t0104100-01;Name=Os01t0104100-01.exon1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104100-01.exon1;rank=1 +1 irgsp CDS 209771 209896 . + 0 ID=CDS:Os01t0104100-01;Parent=transcript:Os01t0104100-01;protein_id=Os01t0104100-01 +1 irgsp exon 210244 210563 . + . Parent=transcript:Os01t0104100-01;Name=Os01t0104100-01.exon2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0104100-01.exon2;rank=2 +1 irgsp CDS 210244 210563 . + 0 ID=CDS:Os01t0104100-01;Parent=transcript:Os01t0104100-01;protein_id=Os01t0104100-01 +1 irgsp exon 210659 210890 . + . Parent=transcript:Os01t0104100-01;Name=Os01t0104100-01.exon3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0104100-01.exon3;rank=3 +1 irgsp CDS 210659 210890 . + 1 ID=CDS:Os01t0104100-01;Parent=transcript:Os01t0104100-01;protein_id=Os01t0104100-01 +1 irgsp exon 211015 211160 . + . Parent=transcript:Os01t0104100-01;Name=Os01t0104100-01.exon4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0104100-01.exon4;rank=4 +1 irgsp CDS 211015 211160 . + 0 ID=CDS:Os01t0104100-01;Parent=transcript:Os01t0104100-01;protein_id=Os01t0104100-01 +1 irgsp exon 212265 212352 . + . Parent=transcript:Os01t0104100-01;Name=Os01t0104100-01.exon5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0104100-01.exon5;rank=5 +1 irgsp CDS 212265 212352 . + 1 ID=CDS:Os01t0104100-01;Parent=transcript:Os01t0104100-01;protein_id=Os01t0104100-01 +1 irgsp exon 212433 212579 . + . Parent=transcript:Os01t0104100-01;Name=Os01t0104100-01.exon6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104100-01.exon6;rank=6 +1 irgsp CDS 212433 212579 . + 0 ID=CDS:Os01t0104100-01;Parent=transcript:Os01t0104100-01;protein_id=Os01t0104100-01 +1 irgsp exon 213490 213639 . + . Parent=transcript:Os01t0104100-01;Name=Os01t0104100-01.exon7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104100-01.exon7;rank=7 +1 irgsp CDS 213490 213639 . + 0 ID=CDS:Os01t0104100-01;Parent=transcript:Os01t0104100-01;protein_id=Os01t0104100-01 +1 irgsp CDS 213741 213788 . + 0 ID=CDS:Os01t0104100-01;Parent=transcript:Os01t0104100-01;protein_id=Os01t0104100-01 +1 irgsp exon 213741 214173 . + . Parent=transcript:Os01t0104100-01;Name=Os01t0104100-01.exon8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0104100-01.exon8;rank=8 +1 irgsp three_prime_UTR 213789 214173 . + . Parent=transcript:Os01t0104100-01 +1 irgsp mRNA 209794 214147 . + . ID=transcript:Os01t0104100-02;Parent=gene:Os01g0104100;biotype=protein_coding;transcript_id=Os01t0104100-02 +1 irgsp five_prime_UTR 209794 209794 . + . Parent=transcript:Os01t0104100-02 +1 irgsp exon 209794 209896 . + . Parent=transcript:Os01t0104100-02;Name=Os01t0104100-02.exon1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0104100-02.exon1;rank=1 +1 irgsp CDS 209795 209896 . + 0 ID=CDS:Os01t0104100-02;Parent=transcript:Os01t0104100-02;protein_id=Os01t0104100-02 +1 irgsp exon 210244 210563 . + . Parent=transcript:Os01t0104100-02;Name=Os01t0104100-01.exon2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0104100-01.exon2;rank=2 +1 irgsp CDS 210244 210563 . + 0 ID=CDS:Os01t0104100-02;Parent=transcript:Os01t0104100-02;protein_id=Os01t0104100-02 +1 irgsp exon 210659 210890 . + . Parent=transcript:Os01t0104100-02;Name=Os01t0104100-01.exon3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0104100-01.exon3;rank=3 +1 irgsp CDS 210659 210890 . + 1 ID=CDS:Os01t0104100-02;Parent=transcript:Os01t0104100-02;protein_id=Os01t0104100-02 +1 irgsp exon 211015 211160 . + . Parent=transcript:Os01t0104100-02;Name=Os01t0104100-01.exon4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0104100-01.exon4;rank=4 +1 irgsp CDS 211015 211160 . + 0 ID=CDS:Os01t0104100-02;Parent=transcript:Os01t0104100-02;protein_id=Os01t0104100-02 +1 irgsp exon 212265 212352 . + . Parent=transcript:Os01t0104100-02;Name=Os01t0104100-01.exon5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0104100-01.exon5;rank=5 +1 irgsp CDS 212265 212352 . + 1 ID=CDS:Os01t0104100-02;Parent=transcript:Os01t0104100-02;protein_id=Os01t0104100-02 +1 irgsp exon 212433 212579 . + . Parent=transcript:Os01t0104100-02;Name=Os01t0104100-01.exon6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104100-01.exon6;rank=6 +1 irgsp CDS 212433 212579 . + 0 ID=CDS:Os01t0104100-02;Parent=transcript:Os01t0104100-02;protein_id=Os01t0104100-02 +1 irgsp exon 213490 213639 . + . Parent=transcript:Os01t0104100-02;Name=Os01t0104100-01.exon7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104100-01.exon7;rank=7 +1 irgsp CDS 213490 213639 . + 0 ID=CDS:Os01t0104100-02;Parent=transcript:Os01t0104100-02;protein_id=Os01t0104100-02 +1 irgsp CDS 213741 213788 . + 0 ID=CDS:Os01t0104100-02;Parent=transcript:Os01t0104100-02;protein_id=Os01t0104100-02 +1 irgsp exon 213741 214147 . + . Parent=transcript:Os01t0104100-02;Name=Os01t0104100-02.exon8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0104100-02.exon8;rank=8 +1 irgsp three_prime_UTR 213789 214147 . + . Parent=transcript:Os01t0104100-02 +### +1 irgsp gene 216212 217345 . + . ID=gene:Os01g0104200;Name=NAC DOMAIN-CONTAINING PROTEIN 16;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein. (Os01t0104200-00);gene_id=Os01g0104200;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 216212 217345 . + . ID=transcript:Os01t0104200-00;Parent=gene:Os01g0104200;biotype=protein_coding;transcript_id=Os01t0104200-00 +1 irgsp exon 216212 216769 . + . Parent=transcript:Os01t0104200-00;Name=Os01t0104200-00.exon1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104200-00.exon1;rank=1 +1 irgsp CDS 216212 216769 . + 0 ID=CDS:Os01t0104200-00;Parent=transcript:Os01t0104200-00;protein_id=Os01t0104200-00 +1 irgsp exon 216884 217345 . + . Parent=transcript:Os01t0104200-00;Name=Os01t0104200-00.exon2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104200-00.exon2;rank=2 +1 irgsp CDS 216884 217345 . + 0 ID=CDS:Os01t0104200-00;Parent=transcript:Os01t0104200-00;protein_id=Os01t0104200-00 +### +1 irgsp gene 226897 229301 . + . ID=gene:Os01g0104400;biotype=protein_coding;description=Ricin B-related lectin domain containing protein. (Os01t0104400-01)%3BRicin B-related lectin domain containing protein. (Os01t0104400-02)%3BRicin B-related lectin domain containing protein. (Os01t0104400-03);gene_id=Os01g0104400;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 226897 229229 . + . ID=transcript:Os01t0104400-01;Parent=gene:Os01g0104400;biotype=protein_coding;transcript_id=Os01t0104400-01 +1 irgsp five_prime_UTR 226897 227181 . + . Parent=transcript:Os01t0104400-01 +1 irgsp exon 226897 227634 . + . Parent=transcript:Os01t0104400-01;Name=Os01t0104400-01.exon1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0104400-01.exon1;rank=1 +1 irgsp CDS 227182 227634 . + 0 ID=CDS:Os01t0104400-01;Parent=transcript:Os01t0104400-01;protein_id=Os01t0104400-01 +1 irgsp exon 227742 227864 . + . Parent=transcript:Os01t0104400-01;Name=Os01t0104400-03.exon2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104400-03.exon2;rank=2 +1 irgsp CDS 227742 227864 . + 0 ID=CDS:Os01t0104400-01;Parent=transcript:Os01t0104400-01;protein_id=Os01t0104400-01 +1 irgsp exon 228557 228785 . + . Parent=transcript:Os01t0104400-01;Name=Os01t0104400-03.exon3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0104400-03.exon3;rank=3 +1 irgsp CDS 228557 228785 . + 0 ID=CDS:Os01t0104400-01;Parent=transcript:Os01t0104400-01;protein_id=Os01t0104400-01 +1 irgsp CDS 228930 228931 . + 2 ID=CDS:Os01t0104400-01;Parent=transcript:Os01t0104400-01;protein_id=Os01t0104400-01 +1 irgsp exon 228930 229229 . + . Parent=transcript:Os01t0104400-01;Name=Os01t0104400-01.exon4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0104400-01.exon4;rank=4 +1 irgsp three_prime_UTR 228932 229229 . + . Parent=transcript:Os01t0104400-01 +1 irgsp mRNA 227139 229301 . + . ID=transcript:Os01t0104400-02;Parent=gene:Os01g0104400;biotype=protein_coding;transcript_id=Os01t0104400-02 +1 irgsp five_prime_UTR 227139 227181 . + . Parent=transcript:Os01t0104400-02 +1 irgsp exon 227139 227634 . + . Parent=transcript:Os01t0104400-02;Name=Os01t0104400-02.exon1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0104400-02.exon1;rank=1 +1 irgsp CDS 227182 227634 . + 0 ID=CDS:Os01t0104400-02;Parent=transcript:Os01t0104400-02;protein_id=Os01t0104400-02 +1 irgsp exon 227742 227864 . + . Parent=transcript:Os01t0104400-02;Name=Os01t0104400-03.exon2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104400-03.exon2;rank=2 +1 irgsp CDS 227742 227864 . + 0 ID=CDS:Os01t0104400-02;Parent=transcript:Os01t0104400-02;protein_id=Os01t0104400-02 +1 irgsp exon 228557 228785 . + . Parent=transcript:Os01t0104400-02;Name=Os01t0104400-03.exon3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0104400-03.exon3;rank=3 +1 irgsp CDS 228557 228785 . + 0 ID=CDS:Os01t0104400-02;Parent=transcript:Os01t0104400-02;protein_id=Os01t0104400-02 +1 irgsp CDS 228930 228931 . + 2 ID=CDS:Os01t0104400-02;Parent=transcript:Os01t0104400-02;protein_id=Os01t0104400-02 +1 irgsp exon 228930 229301 . + . Parent=transcript:Os01t0104400-02;Name=Os01t0104400-02.exon4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0104400-02.exon4;rank=4 +1 irgsp three_prime_UTR 228932 229301 . + . Parent=transcript:Os01t0104400-02 +1 irgsp mRNA 227179 229214 . + . ID=transcript:Os01t0104400-03;Parent=gene:Os01g0104400;biotype=protein_coding;transcript_id=Os01t0104400-03 +1 irgsp five_prime_UTR 227179 227181 . + . Parent=transcript:Os01t0104400-03 +1 irgsp exon 227179 227634 . + . Parent=transcript:Os01t0104400-03;Name=Os01t0104400-03.exon1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0104400-03.exon1;rank=1 +1 irgsp CDS 227182 227634 . + 0 ID=CDS:Os01t0104400-03;Parent=transcript:Os01t0104400-03;protein_id=Os01t0104400-03 +1 irgsp exon 227742 227864 . + . Parent=transcript:Os01t0104400-03;Name=Os01t0104400-03.exon2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104400-03.exon2;rank=2 +1 irgsp CDS 227742 227864 . + 0 ID=CDS:Os01t0104400-03;Parent=transcript:Os01t0104400-03;protein_id=Os01t0104400-03 +1 irgsp exon 228557 228785 . + . Parent=transcript:Os01t0104400-03;Name=Os01t0104400-03.exon3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0104400-03.exon3;rank=3 +1 irgsp CDS 228557 228785 . + 0 ID=CDS:Os01t0104400-03;Parent=transcript:Os01t0104400-03;protein_id=Os01t0104400-03 +1 irgsp CDS 228930 228931 . + 2 ID=CDS:Os01t0104400-03;Parent=transcript:Os01t0104400-03;protein_id=Os01t0104400-03 +1 irgsp exon 228930 229214 . + . Parent=transcript:Os01t0104400-03;Name=Os01t0104400-03.exon4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0104400-03.exon4;rank=4 +1 irgsp three_prime_UTR 228932 229214 . + . Parent=transcript:Os01t0104400-03 +### +1 irgsp gene 241680 243440 . + . ID=gene:Os01g0104500;Name=NAC DOMAIN-CONTAINING PROTEIN 20;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein. (Os01t0104500-01);gene_id=Os01g0104500;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 241680 243440 . + . ID=transcript:Os01t0104500-01;Parent=gene:Os01g0104500;biotype=protein_coding;transcript_id=Os01t0104500-01 +1 irgsp exon 241680 241702 . + . Parent=transcript:Os01t0104500-01;Name=Os01t0104500-01.exon1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0104500-01.exon1;rank=1 +1 irgsp five_prime_UTR 241680 241702 . + . Parent=transcript:Os01t0104500-01 +1 irgsp five_prime_UTR 241866 241907 . + . Parent=transcript:Os01t0104500-01 +1 irgsp exon 241866 242091 . + . Parent=transcript:Os01t0104500-01;Name=Os01t0104500-01.exon2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0104500-01.exon2;rank=2 +1 irgsp CDS 241908 242091 . + 0 ID=CDS:Os01t0104500-01;Parent=transcript:Os01t0104500-01;protein_id=Os01t0104500-01 +1 irgsp CDS 242199 242977 . + 2 ID=CDS:Os01t0104500-01;Parent=transcript:Os01t0104500-01;protein_id=Os01t0104500-01 +1 irgsp exon 242199 243440 . + . Parent=transcript:Os01t0104500-01;Name=Os01t0104500-01.exon3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0104500-01.exon3;rank=3 +1 irgsp three_prime_UTR 242978 243440 . + . Parent=transcript:Os01t0104500-01 +### +1 irgsp gene 248828 256872 . - . ID=gene:Os01g0104600;Name=DE-ETIOLATED1;biotype=protein_coding;description=Homolog of Arabidopsis DE-ETIOLATED1 (DET1)%2C Modulation of the ABA signaling pathway and ABA biosynthesis%2C Regulation of chlorophyll content (Os01t0104600-01)%3BSimilar to Light-mediated development protein DET1 (Deetiolated1 homolog) (tDET1) (High pigmentation protein 2) (Protein dark green). (Os01t0104600-02);gene_id=Os01g0104600;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 248828 256571 . - . ID=transcript:Os01t0104600-02;Parent=gene:Os01g0104600;biotype=protein_coding;transcript_id=Os01t0104600-02 +1 irgsp three_prime_UTR 248828 248970 . - . Parent=transcript:Os01t0104600-02 +1 irgsp exon 248828 249107 . - . Parent=transcript:Os01t0104600-02;Name=Os01t0104600-01.exon11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0104600-01.exon11;rank=11 +1 irgsp CDS 248971 249107 . - 2 ID=CDS:Os01t0104600-02;Parent=transcript:Os01t0104600-02;protein_id=Os01t0104600-02 +1 irgsp exon 249369 249468 . - . Parent=transcript:Os01t0104600-02;Name=Os01t0104600-01.exon10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0104600-01.exon10;rank=10 +1 irgsp CDS 249369 249468 . - 0 ID=CDS:Os01t0104600-02;Parent=transcript:Os01t0104600-02;protein_id=Os01t0104600-02 +1 irgsp exon 249861 249956 . - . Parent=transcript:Os01t0104600-02;Name=Os01t0104600-01.exon9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104600-01.exon9;rank=9 +1 irgsp CDS 249861 249956 . - 0 ID=CDS:Os01t0104600-02;Parent=transcript:Os01t0104600-02;protein_id=Os01t0104600-02 +1 irgsp exon 250617 250781 . - . Parent=transcript:Os01t0104600-02;Name=Os01t0104600-01.exon8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104600-01.exon8;rank=8 +1 irgsp CDS 250617 250781 . - 0 ID=CDS:Os01t0104600-02;Parent=transcript:Os01t0104600-02;protein_id=Os01t0104600-02 +1 irgsp exon 250860 250940 . - . Parent=transcript:Os01t0104600-02;Name=Os01t0104600-01.exon7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104600-01.exon7;rank=7 +1 irgsp CDS 250860 250940 . - 0 ID=CDS:Os01t0104600-02;Parent=transcript:Os01t0104600-02;protein_id=Os01t0104600-02 +1 irgsp exon 251026 251082 . - . Parent=transcript:Os01t0104600-02;Name=Os01t0104600-01.exon6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104600-01.exon6;rank=6 +1 irgsp CDS 251026 251082 . - 0 ID=CDS:Os01t0104600-02;Parent=transcript:Os01t0104600-02;protein_id=Os01t0104600-02 +1 irgsp exon 251316 251384 . - . Parent=transcript:Os01t0104600-02;Name=Os01t0104600-01.exon5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104600-01.exon5;rank=5 +1 irgsp CDS 251316 251384 . - 0 ID=CDS:Os01t0104600-02;Parent=transcript:Os01t0104600-02;protein_id=Os01t0104600-02 +1 irgsp exon 251695 251790 . - . Parent=transcript:Os01t0104600-02;Name=Os01t0104600-01.exon4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104600-01.exon4;rank=4 +1 irgsp CDS 251695 251790 . - 0 ID=CDS:Os01t0104600-02;Parent=transcript:Os01t0104600-02;protein_id=Os01t0104600-02 +1 irgsp exon 255325 255553 . - . Parent=transcript:Os01t0104600-02;Name=Os01t0104600-01.exon3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0104600-01.exon3;rank=3 +1 irgsp CDS 255325 255553 . - 1 ID=CDS:Os01t0104600-02;Parent=transcript:Os01t0104600-02;protein_id=Os01t0104600-02 +1 irgsp exon 255674 256098 . - . Parent=transcript:Os01t0104600-02;Name=Os01t0104600-01.exon2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0104600-01.exon2;rank=2 +1 irgsp CDS 255674 256098 . - 0 ID=CDS:Os01t0104600-02;Parent=transcript:Os01t0104600-02;protein_id=Os01t0104600-02 +1 irgsp CDS 256361 256441 . - 0 ID=CDS:Os01t0104600-02;Parent=transcript:Os01t0104600-02;protein_id=Os01t0104600-02 +1 irgsp exon 256361 256571 . - . Parent=transcript:Os01t0104600-02;Name=Os01t0104600-02.exon1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0104600-02.exon1;rank=1 +1 irgsp five_prime_UTR 256442 256571 . - . Parent=transcript:Os01t0104600-02 +1 irgsp mRNA 248828 256872 . - . ID=transcript:Os01t0104600-01;Parent=gene:Os01g0104600;biotype=protein_coding;transcript_id=Os01t0104600-01 +1 irgsp three_prime_UTR 248828 248970 . - . Parent=transcript:Os01t0104600-01 +1 irgsp exon 248828 249107 . - . Parent=transcript:Os01t0104600-01;Name=Os01t0104600-01.exon11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0104600-01.exon11;rank=11 +1 irgsp CDS 248971 249107 . - 2 ID=CDS:Os01t0104600-01;Parent=transcript:Os01t0104600-01;protein_id=Os01t0104600-01 +1 irgsp exon 249369 249468 . - . Parent=transcript:Os01t0104600-01;Name=Os01t0104600-01.exon10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0104600-01.exon10;rank=10 +1 irgsp CDS 249369 249468 . - 0 ID=CDS:Os01t0104600-01;Parent=transcript:Os01t0104600-01;protein_id=Os01t0104600-01 +1 irgsp exon 249861 249956 . - . Parent=transcript:Os01t0104600-01;Name=Os01t0104600-01.exon9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104600-01.exon9;rank=9 +1 irgsp CDS 249861 249956 . - 0 ID=CDS:Os01t0104600-01;Parent=transcript:Os01t0104600-01;protein_id=Os01t0104600-01 +1 irgsp exon 250617 250781 . - . Parent=transcript:Os01t0104600-01;Name=Os01t0104600-01.exon8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104600-01.exon8;rank=8 +1 irgsp CDS 250617 250781 . - 0 ID=CDS:Os01t0104600-01;Parent=transcript:Os01t0104600-01;protein_id=Os01t0104600-01 +1 irgsp exon 250860 250940 . - . Parent=transcript:Os01t0104600-01;Name=Os01t0104600-01.exon7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104600-01.exon7;rank=7 +1 irgsp CDS 250860 250940 . - 0 ID=CDS:Os01t0104600-01;Parent=transcript:Os01t0104600-01;protein_id=Os01t0104600-01 +1 irgsp exon 251026 251082 . - . Parent=transcript:Os01t0104600-01;Name=Os01t0104600-01.exon6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104600-01.exon6;rank=6 +1 irgsp CDS 251026 251082 . - 0 ID=CDS:Os01t0104600-01;Parent=transcript:Os01t0104600-01;protein_id=Os01t0104600-01 +1 irgsp exon 251316 251384 . - . Parent=transcript:Os01t0104600-01;Name=Os01t0104600-01.exon5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104600-01.exon5;rank=5 +1 irgsp CDS 251316 251384 . - 0 ID=CDS:Os01t0104600-01;Parent=transcript:Os01t0104600-01;protein_id=Os01t0104600-01 +1 irgsp exon 251695 251790 . - . Parent=transcript:Os01t0104600-01;Name=Os01t0104600-01.exon4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104600-01.exon4;rank=4 +1 irgsp CDS 251695 251790 . - 0 ID=CDS:Os01t0104600-01;Parent=transcript:Os01t0104600-01;protein_id=Os01t0104600-01 +1 irgsp exon 255325 255553 . - . Parent=transcript:Os01t0104600-01;Name=Os01t0104600-01.exon3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0104600-01.exon3;rank=3 +1 irgsp CDS 255325 255553 . - 1 ID=CDS:Os01t0104600-01;Parent=transcript:Os01t0104600-01;protein_id=Os01t0104600-01 +1 irgsp exon 255674 256098 . - . Parent=transcript:Os01t0104600-01;Name=Os01t0104600-01.exon2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0104600-01.exon2;rank=2 +1 irgsp CDS 255674 256098 . - 0 ID=CDS:Os01t0104600-01;Parent=transcript:Os01t0104600-01;protein_id=Os01t0104600-01 +1 irgsp CDS 256361 256441 . - 0 ID=CDS:Os01t0104600-01;Parent=transcript:Os01t0104600-01;protein_id=Os01t0104600-01 +1 irgsp exon 256361 256872 . - . Parent=transcript:Os01t0104600-01;Name=Os01t0104600-01.exon1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0104600-01.exon1;rank=1 +1 irgsp five_prime_UTR 256442 256872 . - . Parent=transcript:Os01t0104600-01 +### +1 irgsp gene 261530 268145 . + . ID=gene:Os01g0104800;biotype=protein_coding;description=Sas10/Utp3 family protein. (Os01t0104800-01)%3BHypothetical conserved gene. (Os01t0104800-02);gene_id=Os01g0104800;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 261530 268145 . + . ID=transcript:Os01t0104800-01;Parent=gene:Os01g0104800;biotype=protein_coding;transcript_id=Os01t0104800-01 +1 irgsp five_prime_UTR 261530 261561 . + . Parent=transcript:Os01t0104800-01 +1 irgsp exon 261530 261661 . + . Parent=transcript:Os01t0104800-01;Name=Os01t0104800-01.exon1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0104800-01.exon1;rank=1 +1 irgsp CDS 261562 261661 . + 0 ID=CDS:Os01t0104800-01;Parent=transcript:Os01t0104800-01;protein_id=Os01t0104800-01 +1 irgsp exon 261767 261805 . + . Parent=transcript:Os01t0104800-01;Name=Os01t0104800-01.exon2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0104800-01.exon2;rank=2 +1 irgsp CDS 261767 261805 . + 2 ID=CDS:Os01t0104800-01;Parent=transcript:Os01t0104800-01;protein_id=Os01t0104800-01 +1 irgsp exon 261895 261941 . + . Parent=transcript:Os01t0104800-01;Name=Os01t0104800-01.exon3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0104800-01.exon3;rank=3 +1 irgsp CDS 261895 261941 . + 2 ID=CDS:Os01t0104800-01;Parent=transcript:Os01t0104800-01;protein_id=Os01t0104800-01 +1 irgsp exon 262582 262681 . + . Parent=transcript:Os01t0104800-01;Name=Os01t0104800-01.exon4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0104800-01.exon4;rank=4 +1 irgsp CDS 262582 262681 . + 0 ID=CDS:Os01t0104800-01;Parent=transcript:Os01t0104800-01;protein_id=Os01t0104800-01 +1 irgsp exon 262925 263181 . + . Parent=transcript:Os01t0104800-01;Name=Os01t0104800-01.exon5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0104800-01.exon5;rank=5 +1 irgsp CDS 262925 263181 . + 2 ID=CDS:Os01t0104800-01;Parent=transcript:Os01t0104800-01;protein_id=Os01t0104800-01 +1 irgsp exon 263525 263640 . + . Parent=transcript:Os01t0104800-01;Name=Os01t0104800-01.exon6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0104800-01.exon6;rank=6 +1 irgsp CDS 263525 263640 . + 0 ID=CDS:Os01t0104800-01;Parent=transcript:Os01t0104800-01;protein_id=Os01t0104800-01 +1 irgsp exon 264014 264098 . + . Parent=transcript:Os01t0104800-01;Name=Os01t0104800-01.exon7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0104800-01.exon7;rank=7 +1 irgsp CDS 264014 264098 . + 1 ID=CDS:Os01t0104800-01;Parent=transcript:Os01t0104800-01;protein_id=Os01t0104800-01 +1 irgsp exon 265236 265415 . + . Parent=transcript:Os01t0104800-01;Name=Os01t0104800-01.exon8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104800-01.exon8;rank=8 +1 irgsp CDS 265236 265415 . + 0 ID=CDS:Os01t0104800-01;Parent=transcript:Os01t0104800-01;protein_id=Os01t0104800-01 +1 irgsp exon 265506 265649 . + . Parent=transcript:Os01t0104800-01;Name=Os01t0104800-01.exon9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104800-01.exon9;rank=9 +1 irgsp CDS 265506 265649 . + 0 ID=CDS:Os01t0104800-01;Parent=transcript:Os01t0104800-01;protein_id=Os01t0104800-01 +1 irgsp exon 265740 265817 . + . Parent=transcript:Os01t0104800-01;Name=Os01t0104800-01.exon10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104800-01.exon10;rank=10 +1 irgsp CDS 265740 265817 . + 0 ID=CDS:Os01t0104800-01;Parent=transcript:Os01t0104800-01;protein_id=Os01t0104800-01 +1 irgsp exon 265909 266045 . + . Parent=transcript:Os01t0104800-01;Name=Os01t0104800-01.exon11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0104800-01.exon11;rank=11 +1 irgsp CDS 265909 266045 . + 0 ID=CDS:Os01t0104800-01;Parent=transcript:Os01t0104800-01;protein_id=Os01t0104800-01 +1 irgsp exon 266138 266246 . + . Parent=transcript:Os01t0104800-01;Name=Os01t0104800-01.exon12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0104800-01.exon12;rank=12 +1 irgsp CDS 266138 266246 . + 1 ID=CDS:Os01t0104800-01;Parent=transcript:Os01t0104800-01;protein_id=Os01t0104800-01 +1 irgsp exon 267237 267514 . + . Parent=transcript:Os01t0104800-01;Name=Os01t0104800-01.exon13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0104800-01.exon13;rank=13 +1 irgsp CDS 267237 267514 . + 0 ID=CDS:Os01t0104800-01;Parent=transcript:Os01t0104800-01;protein_id=Os01t0104800-01 +1 irgsp exon 267591 267657 . + . Parent=transcript:Os01t0104800-01;Name=Os01t0104800-01.exon14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0104800-01.exon14;rank=14 +1 irgsp CDS 267591 267657 . + 1 ID=CDS:Os01t0104800-01;Parent=transcript:Os01t0104800-01;protein_id=Os01t0104800-01 +1 irgsp exon 267734 267802 . + . Parent=transcript:Os01t0104800-01;Name=Os01t0104800-01.exon15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104800-01.exon15;rank=15 +1 irgsp CDS 267734 267802 . + 0 ID=CDS:Os01t0104800-01;Parent=transcript:Os01t0104800-01;protein_id=Os01t0104800-01 +1 irgsp CDS 267880 268011 . + 0 ID=CDS:Os01t0104800-01;Parent=transcript:Os01t0104800-01;protein_id=Os01t0104800-01 +1 irgsp exon 267880 268145 . + . Parent=transcript:Os01t0104800-01;Name=Os01t0104800-01.exon16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0104800-01.exon16;rank=16 +1 irgsp three_prime_UTR 268012 268145 . + . Parent=transcript:Os01t0104800-01 +1 irgsp mRNA 263523 268120 . + . ID=transcript:Os01t0104800-02;Parent=gene:Os01g0104800;biotype=protein_coding;transcript_id=Os01t0104800-02 +1 irgsp five_prime_UTR 263523 263524 . + . Parent=transcript:Os01t0104800-02 +1 irgsp exon 263523 263640 . + . Parent=transcript:Os01t0104800-02;Name=Os01t0104800-02.exon1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0104800-02.exon1;rank=1 +1 irgsp CDS 263525 263640 . + 0 ID=CDS:Os01t0104800-02;Parent=transcript:Os01t0104800-02;protein_id=Os01t0104800-02 +1 irgsp exon 264014 264098 . + . Parent=transcript:Os01t0104800-02;Name=Os01t0104800-01.exon7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0104800-01.exon7;rank=2 +1 irgsp CDS 264014 264098 . + 1 ID=CDS:Os01t0104800-02;Parent=transcript:Os01t0104800-02;protein_id=Os01t0104800-02 +1 irgsp exon 265236 265415 . + . Parent=transcript:Os01t0104800-02;Name=Os01t0104800-01.exon8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104800-01.exon8;rank=3 +1 irgsp CDS 265236 265415 . + 0 ID=CDS:Os01t0104800-02;Parent=transcript:Os01t0104800-02;protein_id=Os01t0104800-02 +1 irgsp exon 265506 265649 . + . Parent=transcript:Os01t0104800-02;Name=Os01t0104800-01.exon9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104800-01.exon9;rank=4 +1 irgsp CDS 265506 265649 . + 0 ID=CDS:Os01t0104800-02;Parent=transcript:Os01t0104800-02;protein_id=Os01t0104800-02 +1 irgsp exon 265740 265817 . + . Parent=transcript:Os01t0104800-02;Name=Os01t0104800-01.exon10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104800-01.exon10;rank=5 +1 irgsp CDS 265740 265817 . + 0 ID=CDS:Os01t0104800-02;Parent=transcript:Os01t0104800-02;protein_id=Os01t0104800-02 +1 irgsp exon 265909 266045 . + . Parent=transcript:Os01t0104800-02;Name=Os01t0104800-01.exon11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0104800-01.exon11;rank=6 +1 irgsp CDS 265909 266045 . + 0 ID=CDS:Os01t0104800-02;Parent=transcript:Os01t0104800-02;protein_id=Os01t0104800-02 +1 irgsp exon 266138 266246 . + . Parent=transcript:Os01t0104800-02;Name=Os01t0104800-01.exon12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0104800-01.exon12;rank=7 +1 irgsp CDS 266138 266246 . + 1 ID=CDS:Os01t0104800-02;Parent=transcript:Os01t0104800-02;protein_id=Os01t0104800-02 +1 irgsp exon 267237 267514 . + . Parent=transcript:Os01t0104800-02;Name=Os01t0104800-01.exon13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0104800-01.exon13;rank=8 +1 irgsp CDS 267237 267514 . + 0 ID=CDS:Os01t0104800-02;Parent=transcript:Os01t0104800-02;protein_id=Os01t0104800-02 +1 irgsp exon 267591 267657 . + . Parent=transcript:Os01t0104800-02;Name=Os01t0104800-01.exon14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0104800-01.exon14;rank=9 +1 irgsp CDS 267591 267657 . + 1 ID=CDS:Os01t0104800-02;Parent=transcript:Os01t0104800-02;protein_id=Os01t0104800-02 +1 irgsp exon 267734 267802 . + . Parent=transcript:Os01t0104800-02;Name=Os01t0104800-01.exon15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104800-01.exon15;rank=10 +1 irgsp CDS 267734 267802 . + 0 ID=CDS:Os01t0104800-02;Parent=transcript:Os01t0104800-02;protein_id=Os01t0104800-02 +1 irgsp CDS 267880 268011 . + 0 ID=CDS:Os01t0104800-02;Parent=transcript:Os01t0104800-02;protein_id=Os01t0104800-02 +1 irgsp exon 267880 268120 . + . Parent=transcript:Os01t0104800-02;Name=Os01t0104800-02.exon11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0104800-02.exon11;rank=11 +1 irgsp three_prime_UTR 268012 268120 . + . Parent=transcript:Os01t0104800-02 +### +1 irgsp gene 270179 275084 . - . ID=gene:Os01g0104900;biotype=protein_coding;description=Transferase family protein. (Os01t0104900-01)%3BHypothetical conserved gene. (Os01t0104900-02);gene_id=Os01g0104900;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 270179 275084 . - . ID=transcript:Os01t0104900-01;Parent=gene:Os01g0104900;biotype=protein_coding;transcript_id=Os01t0104900-01 +1 irgsp three_prime_UTR 270179 270355 . - . Parent=transcript:Os01t0104900-01 +1 irgsp exon 270179 271333 . - . Parent=transcript:Os01t0104900-01;Name=Os01t0104900-01.exon2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0104900-01.exon2;rank=2 +1 irgsp CDS 270356 271333 . - 0 ID=CDS:Os01t0104900-01;Parent=transcript:Os01t0104900-01;protein_id=Os01t0104900-01 +1 irgsp CDS 274529 274957 . - 0 ID=CDS:Os01t0104900-01;Parent=transcript:Os01t0104900-01;protein_id=Os01t0104900-01 +1 irgsp exon 274529 275084 . - . Parent=transcript:Os01t0104900-01;Name=Os01t0104900-01.exon1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0104900-01.exon1;rank=1 +1 irgsp five_prime_UTR 274958 275084 . - . Parent=transcript:Os01t0104900-01 +1 irgsp mRNA 270250 271518 . - . ID=transcript:Os01t0104900-02;Parent=gene:Os01g0104900;biotype=protein_coding;transcript_id=Os01t0104900-02 +1 irgsp three_prime_UTR 270250 270355 . - . Parent=transcript:Os01t0104900-02 +1 irgsp exon 270250 271333 . - . Parent=transcript:Os01t0104900-02;Name=Os01t0104900-02.exon2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0104900-02.exon2;rank=2 +1 irgsp CDS 270356 271309 . - 0 ID=CDS:Os01t0104900-02;Parent=transcript:Os01t0104900-02;protein_id=Os01t0104900-02 +1 irgsp five_prime_UTR 271310 271333 . - . Parent=transcript:Os01t0104900-02 +1 irgsp exon 271457 271518 . - . Parent=transcript:Os01t0104900-02;Name=Os01t0104900-02.exon1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0104900-02.exon1;rank=1 +1 irgsp five_prime_UTR 271457 271518 . - . Parent=transcript:Os01t0104900-02 +### +1 irgsp gene 284762 291892 . - . ID=gene:Os01g0105300;biotype=protein_coding;description=Similar to HAT family dimerisation domain containing protein%2C expressed. (Os01t0105300-01);gene_id=Os01g0105300;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 284762 291892 . - . ID=transcript:Os01t0105300-01;Parent=gene:Os01g0105300;biotype=protein_coding;transcript_id=Os01t0105300-01 +1 irgsp three_prime_UTR 284762 284930 . - . Parent=transcript:Os01t0105300-01 +1 irgsp exon 284762 287047 . - . Parent=transcript:Os01t0105300-01;Name=Os01t0105300-01.exon5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0105300-01.exon5;rank=5 +1 irgsp CDS 284931 285020 . - 0 ID=CDS:Os01t0105300-01;Parent=transcript:Os01t0105300-01;protein_id=Os01t0105300-01 +1 irgsp five_prime_UTR 285021 287047 . - . Parent=transcript:Os01t0105300-01 +1 irgsp exon 291398 291436 . - . Parent=transcript:Os01t0105300-01;Name=Os01t0105300-01.exon4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0105300-01.exon4;rank=4 +1 irgsp five_prime_UTR 291398 291436 . - . Parent=transcript:Os01t0105300-01 +1 irgsp exon 291520 291534 . - . Parent=transcript:Os01t0105300-01;Name=Os01t0105300-01.exon3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0105300-01.exon3;rank=3 +1 irgsp five_prime_UTR 291520 291534 . - . Parent=transcript:Os01t0105300-01 +1 irgsp exon 291678 291738 . - . Parent=transcript:Os01t0105300-01;Name=Os01t0105300-01.exon2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0105300-01.exon2;rank=2 +1 irgsp five_prime_UTR 291678 291738 . - . Parent=transcript:Os01t0105300-01 +1 irgsp exon 291838 291892 . - . Parent=transcript:Os01t0105300-01;Name=Os01t0105300-01.exon1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0105300-01.exon1;rank=1 +1 irgsp five_prime_UTR 291838 291892 . - . Parent=transcript:Os01t0105300-01 +### +1 irgsp gene 288372 292296 . + . ID=gene:Os01g0105400;biotype=protein_coding;description=Similar to Kinesin heavy chain. (Os01t0105400-01);gene_id=Os01g0105400;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 288372 292296 . + . ID=transcript:Os01t0105400-01;Parent=gene:Os01g0105400;biotype=protein_coding;transcript_id=Os01t0105400-01 +1 irgsp exon 288372 288846 . + . Parent=transcript:Os01t0105400-01;Name=Os01t0105400-01.exon1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0105400-01.exon1;rank=1 +1 irgsp five_prime_UTR 288372 288846 . + . Parent=transcript:Os01t0105400-01 +1 irgsp exon 288950 289116 . + . Parent=transcript:Os01t0105400-01;Name=Os01t0105400-01.exon2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0105400-01.exon2;rank=2 +1 irgsp five_prime_UTR 288950 289116 . + . Parent=transcript:Os01t0105400-01 +1 irgsp exon 289202 289572 . + . Parent=transcript:Os01t0105400-01;Name=Os01t0105400-01.exon3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0105400-01.exon3;rank=3 +1 irgsp five_prime_UTR 289202 289572 . + . Parent=transcript:Os01t0105400-01 +1 irgsp exon 289661 289830 . + . Parent=transcript:Os01t0105400-01;Name=Os01t0105400-01.exon4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0105400-01.exon4;rank=4 +1 irgsp five_prime_UTR 289661 289830 . + . Parent=transcript:Os01t0105400-01 +1 irgsp five_prime_UTR 290395 290432 . + . Parent=transcript:Os01t0105400-01 +1 irgsp exon 290395 290512 . + . Parent=transcript:Os01t0105400-01;Name=Os01t0105400-01.exon5;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0105400-01.exon5;rank=5 +1 irgsp CDS 290433 290512 . + 0 ID=CDS:Os01t0105400-01;Parent=transcript:Os01t0105400-01;protein_id=Os01t0105400-01 +1 irgsp CDS 291372 291558 . + 1 ID=CDS:Os01t0105400-01;Parent=transcript:Os01t0105400-01;protein_id=Os01t0105400-01 +1 irgsp exon 291372 291574 . + . Parent=transcript:Os01t0105400-01;Name=Os01t0105400-01.exon6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0105400-01.exon6;rank=6 +1 irgsp three_prime_UTR 291559 291574 . + . Parent=transcript:Os01t0105400-01 +1 irgsp exon 291648 291779 . + . Parent=transcript:Os01t0105400-01;Name=Os01t0105400-01.exon7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0105400-01.exon7;rank=7 +1 irgsp three_prime_UTR 291648 291779 . + . Parent=transcript:Os01t0105400-01 +1 irgsp exon 291859 291948 . + . Parent=transcript:Os01t0105400-01;Name=Os01t0105400-01.exon8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0105400-01.exon8;rank=8 +1 irgsp three_prime_UTR 291859 291948 . + . Parent=transcript:Os01t0105400-01 +1 irgsp exon 292073 292296 . + . Parent=transcript:Os01t0105400-01;Name=Os01t0105400-01.exon9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0105400-01.exon9;rank=9 +1 irgsp three_prime_UTR 292073 292296 . + . Parent=transcript:Os01t0105400-01 +### +1 irgsp gene 303233 306736 . + . ID=gene:Os01g0105700;Name=basic helix-loop-helix protein 071;biotype=protein_coding;description=Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os01t0105700-01);gene_id=Os01g0105700;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 303233 306736 . + . ID=transcript:Os01t0105700-01;Parent=gene:Os01g0105700;biotype=protein_coding;transcript_id=Os01t0105700-01 +1 irgsp five_prime_UTR 303233 303328 . + . Parent=transcript:Os01t0105700-01 +1 irgsp exon 303233 303471 . + . Parent=transcript:Os01t0105700-01;Name=Os01t0105700-01.exon1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0105700-01.exon1;rank=1 +1 irgsp CDS 303329 303471 . + 0 ID=CDS:Os01t0105700-01;Parent=transcript:Os01t0105700-01;protein_id=Os01t0105700-01 +1 irgsp exon 303981 304509 . + . Parent=transcript:Os01t0105700-01;Name=Os01t0105700-01.exon2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0105700-01.exon2;rank=2 +1 irgsp CDS 303981 304509 . + 1 ID=CDS:Os01t0105700-01;Parent=transcript:Os01t0105700-01;protein_id=Os01t0105700-01 +1 irgsp exon 305572 305718 . + . Parent=transcript:Os01t0105700-01;Name=Os01t0105700-01.exon3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0105700-01.exon3;rank=3 +1 irgsp CDS 305572 305718 . + 0 ID=CDS:Os01t0105700-01;Parent=transcript:Os01t0105700-01;protein_id=Os01t0105700-01 +1 irgsp exon 305834 305899 . + . Parent=transcript:Os01t0105700-01;Name=Os01t0105700-01.exon4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0105700-01.exon4;rank=4 +1 irgsp CDS 305834 305899 . + 0 ID=CDS:Os01t0105700-01;Parent=transcript:Os01t0105700-01;protein_id=Os01t0105700-01 +1 irgsp exon 305993 306058 . + . Parent=transcript:Os01t0105700-01;Name=Os01t0105700-01.exon5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0105700-01.exon5;rank=5 +1 irgsp CDS 305993 306058 . + 0 ID=CDS:Os01t0105700-01;Parent=transcript:Os01t0105700-01;protein_id=Os01t0105700-01 +1 irgsp exon 306171 306245 . + . Parent=transcript:Os01t0105700-01;Name=Os01t0105700-01.exon6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0105700-01.exon6;rank=6 +1 irgsp CDS 306171 306245 . + 0 ID=CDS:Os01t0105700-01;Parent=transcript:Os01t0105700-01;protein_id=Os01t0105700-01 +1 irgsp CDS 306353 306493 . + 0 ID=CDS:Os01t0105700-01;Parent=transcript:Os01t0105700-01;protein_id=Os01t0105700-01 +1 irgsp exon 306353 306736 . + . Parent=transcript:Os01t0105700-01;Name=Os01t0105700-01.exon7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0105700-01.exon7;rank=7 +1 irgsp three_prime_UTR 306494 306736 . + . Parent=transcript:Os01t0105700-01 +### +1 irgsp gene 306871 308842 . - . ID=gene:Os01g0105800;Name=IRON-SULFUR CLUSTER PROTEIN 9;biotype=protein_coding;description=Similar to Iron sulfur assembly protein 1. (Os01t0105800-01);gene_id=Os01g0105800;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 306871 308842 . - . ID=transcript:Os01t0105800-01;Parent=gene:Os01g0105800;biotype=protein_coding;transcript_id=Os01t0105800-01 +1 irgsp three_prime_UTR 306871 307123 . - . Parent=transcript:Os01t0105800-01 +1 irgsp exon 306871 307217 . - . Parent=transcript:Os01t0105800-01;Name=Os01t0105800-01.exon4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0105800-01.exon4;rank=4 +1 irgsp CDS 307124 307217 . - 1 ID=CDS:Os01t0105800-01;Parent=transcript:Os01t0105800-01;protein_id=Os01t0105800-01 +1 irgsp exon 307296 307413 . - . Parent=transcript:Os01t0105800-01;Name=Os01t0105800-01.exon3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0105800-01.exon3;rank=3 +1 irgsp CDS 307296 307413 . - 2 ID=CDS:Os01t0105800-01;Parent=transcript:Os01t0105800-01;protein_id=Os01t0105800-01 +1 irgsp CDS 308397 308601 . - 0 ID=CDS:Os01t0105800-01;Parent=transcript:Os01t0105800-01;protein_id=Os01t0105800-01 +1 irgsp exon 308397 308626 . - . Parent=transcript:Os01t0105800-01;Name=Os01t0105800-01.exon2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0105800-01.exon2;rank=2 +1 irgsp five_prime_UTR 308602 308626 . - . Parent=transcript:Os01t0105800-01 +1 irgsp exon 308703 308842 . - . Parent=transcript:Os01t0105800-01;Name=Os01t0105800-01.exon1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0105800-01.exon1;rank=1 +1 irgsp five_prime_UTR 308703 308842 . - . Parent=transcript:Os01t0105800-01 +### +1 irgsp gene 309520 313170 . - . ID=gene:Os01g0105900;biotype=protein_coding;description=Carbohydrate/purine kinase domain containing protein. (Os01t0105900-01);gene_id=Os01g0105900;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 309520 313170 . - . ID=transcript:Os01t0105900-01;Parent=gene:Os01g0105900;biotype=protein_coding;transcript_id=Os01t0105900-01 +1 irgsp three_prime_UTR 309520 309821 . - . Parent=transcript:Os01t0105900-01 +1 irgsp exon 309520 310070 . - . Parent=transcript:Os01t0105900-01;Name=Os01t0105900-01.exon8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0105900-01.exon8;rank=8 +1 irgsp CDS 309822 310070 . - 0 ID=CDS:Os01t0105900-01;Parent=transcript:Os01t0105900-01;protein_id=Os01t0105900-01 +1 irgsp exon 310256 310367 . - . Parent=transcript:Os01t0105900-01;Name=Os01t0105900-01.exon7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0105900-01.exon7;rank=7 +1 irgsp CDS 310256 310367 . - 1 ID=CDS:Os01t0105900-01;Parent=transcript:Os01t0105900-01;protein_id=Os01t0105900-01 +1 irgsp exon 310455 310552 . - . Parent=transcript:Os01t0105900-01;Name=Os01t0105900-01.exon6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0105900-01.exon6;rank=6 +1 irgsp CDS 310455 310552 . - 0 ID=CDS:Os01t0105900-01;Parent=transcript:Os01t0105900-01;protein_id=Os01t0105900-01 +1 irgsp exon 310632 310739 . - . Parent=transcript:Os01t0105900-01;Name=Os01t0105900-01.exon5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0105900-01.exon5;rank=5 +1 irgsp CDS 310632 310739 . - 0 ID=CDS:Os01t0105900-01;Parent=transcript:Os01t0105900-01;protein_id=Os01t0105900-01 +1 irgsp exon 310880 310918 . - . Parent=transcript:Os01t0105900-01;Name=Os01t0105900-01.exon4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0105900-01.exon4;rank=4 +1 irgsp CDS 310880 310918 . - 0 ID=CDS:Os01t0105900-01;Parent=transcript:Os01t0105900-01;protein_id=Os01t0105900-01 +1 irgsp exon 311002 311073 . - . Parent=transcript:Os01t0105900-01;Name=Os01t0105900-01.exon3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0105900-01.exon3;rank=3 +1 irgsp CDS 311002 311073 . - 0 ID=CDS:Os01t0105900-01;Parent=transcript:Os01t0105900-01;protein_id=Os01t0105900-01 +1 irgsp exon 311163 311426 . - . Parent=transcript:Os01t0105900-01;Name=Os01t0105900-01.exon2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0105900-01.exon2;rank=2 +1 irgsp CDS 311163 311426 . - 0 ID=CDS:Os01t0105900-01;Parent=transcript:Os01t0105900-01;protein_id=Os01t0105900-01 +1 irgsp CDS 312867 313064 . - 0 ID=CDS:Os01t0105900-01;Parent=transcript:Os01t0105900-01;protein_id=Os01t0105900-01 +1 irgsp exon 312867 313170 . - . Parent=transcript:Os01t0105900-01;Name=Os01t0105900-01.exon1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0105900-01.exon1;rank=1 +1 irgsp five_prime_UTR 313065 313170 . - . Parent=transcript:Os01t0105900-01 +### +1 irgsp gene 319754 322205 . + . ID=gene:Os01g0106200;biotype=protein_coding;description=Similar to RER1A protein (AtRER1A). (Os01t0106200-01);gene_id=Os01g0106200;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 319754 322205 . + . ID=transcript:Os01t0106200-01;Parent=gene:Os01g0106200;biotype=protein_coding;transcript_id=Os01t0106200-01 +1 irgsp five_prime_UTR 319754 319874 . + . Parent=transcript:Os01t0106200-01 +1 irgsp exon 319754 320236 . + . Parent=transcript:Os01t0106200-01;Name=Os01t0106200-01.exon1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0106200-01.exon1;rank=1 +1 irgsp CDS 319875 320236 . + 0 ID=CDS:Os01t0106200-01;Parent=transcript:Os01t0106200-01;protein_id=Os01t0106200-01 +1 irgsp exon 321468 321648 . + . Parent=transcript:Os01t0106200-01;Name=Os01t0106200-01.exon2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0106200-01.exon2;rank=2 +1 irgsp CDS 321468 321648 . + 1 ID=CDS:Os01t0106200-01;Parent=transcript:Os01t0106200-01;protein_id=Os01t0106200-01 +1 irgsp CDS 321928 321975 . + 0 ID=CDS:Os01t0106200-01;Parent=transcript:Os01t0106200-01;protein_id=Os01t0106200-01 +1 irgsp exon 321928 322205 . + . Parent=transcript:Os01t0106200-01;Name=Os01t0106200-01.exon3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0106200-01.exon3;rank=3 +1 irgsp three_prime_UTR 321976 322205 . + . Parent=transcript:Os01t0106200-01 +### +1 irgsp gene 322591 323923 . - . ID=gene:Os01g0106300;biotype=protein_coding;description=Similar to Isoflavone reductase homolog IRL (EC 1.3.1.-). (Os01t0106300-01);gene_id=Os01g0106300;logic_name=irgspv1.0-20170804-genes +1 irgsp mRNA 322591 323923 . - . ID=transcript:Os01t0106300-01;Parent=gene:Os01g0106300;biotype=protein_coding;transcript_id=Os01t0106300-01 +1 irgsp three_prime_UTR 322591 322809 . - . Parent=transcript:Os01t0106300-01 +1 irgsp exon 322591 322973 . - . Parent=transcript:Os01t0106300-01;Name=Os01t0106300-01.exon2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0106300-01.exon2;rank=2 diff --git a/src/agat/agat_sp_compare_two_annotations/test_data/agat_sp_compare_two_annotations_1.txt b/src/agat/agat_sp_compare_two_annotations/test_data/agat_sp_compare_two_annotations_1.txt new file mode 100644 index 00000000..edb0dc52 --- /dev/null +++ b/src/agat/agat_sp_compare_two_annotations/test_data/agat_sp_compare_two_annotations_1.txt @@ -0,0 +1,59 @@ +usage: bin/agat_sp_compare_two_annotations.pl --gff1 t/scripts_output/in/1.gff --gff2 t/scripts_output/in/1.gff -o tmp.gff +Results of number of genes from file1 that overlap genes from file2: + +---------------------------------------------------------------------------------------------- +| chromosome | +---------------------------------------------------------------------------------------------- +| 1.gff | 1.gff | Number of cases | +---------------------------------------------------------------------------------------------- +| 1 | 1 | 1 | +---------------------------------------------------------------------------------------------- +Number gene in 1: 1 +Number gene in 1: 1 + + +---------------------------------------------------------------------------------------------- +| gene@mrna@cds | +---------------------------------------------------------------------------------------------- +| 1.gff | 1.gff | Number of cases | +---------------------------------------------------------------------------------------------- +| 1 | 1 | 51 | +---------------------------------------------------------------------------------------------- +Number gene in 1: 51 +Number gene in 1: 51 + + +---------------------------------------------------------------------------------------------- +| gene@mrna@exon | +---------------------------------------------------------------------------------------------- +| 1.gff | 1.gff | Number of cases | +---------------------------------------------------------------------------------------------- +| 1 | 1 | 1 | +---------------------------------------------------------------------------------------------- +Number gene in 1: 1 +Number gene in 1: 1 + + +---------------------------------------------------------------------------------------------- +| ncrna_gene@trna@exon | +---------------------------------------------------------------------------------------------- +| 1.gff | 1.gff | Number of cases | +---------------------------------------------------------------------------------------------- +| 1 | 1 | 1 | +---------------------------------------------------------------------------------------------- +Number gene in 1: 1 +Number gene in 1: 1 + + +---------------------------------------------------------------------------------------------- +| repeat_region | +---------------------------------------------------------------------------------------------- +| 1.gff | 1.gff | Number of cases | +---------------------------------------------------------------------------------------------- +| 1 | 1 | 2 | +---------------------------------------------------------------------------------------------- +Number gene in 1: 2 +Number gene in 1: 2 + + + diff --git a/src/agat/agat_sp_compare_two_annotations/test_data/script.sh b/src/agat/agat_sp_compare_two_annotations/test_data/script.sh new file mode 100755 index 00000000..84b85758 --- /dev/null +++ b/src/agat/agat_sp_compare_two_annotations/test_data/script.sh @@ -0,0 +1,10 @@ +#!/bin/bash + +# clone repo +if [ ! -d /tmp/agat_source ]; then + git clone --depth 1 --single-branch --branch master https://github.com/NBISweden/AGAT /tmp/agat_source +fi + +# copy test data +cp -r /tmp/agat_source/t/scripts_output/in/1.gff src/agat/agat_sp_compare_two_annotations/test_data +cp -r /tmp/agat_source/t/scripts_output/out/agat_sp_compare_two_annotations_1.txt src/agat/agat_sp_compare_two_annotations/test_data \ No newline at end of file From a1b45ad5355c0fc8e98235a91c3266679401b1dc Mon Sep 17 00:00:00 2001 From: Leila011 Date: Wed, 7 Aug 2024 10:45:48 +0200 Subject: [PATCH 05/15] config: remove required tag for a boolean type --- src/agat/agat_sp_compare_two_annotations/config.vsh.yaml | 1 - 1 file changed, 1 deletion(-) diff --git a/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml b/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml index 69c05a45..5723084a 100644 --- a/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml +++ b/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml @@ -68,7 +68,6 @@ argument_groups: alternatives: [-v] description: Verbose option, makes it easier to follow what is going on. type: boolean_true - required: false example: true - name: --config alternatives: [-c] From 5c91b02ca3ac2bff14449fa41e5d7673f0ee2417 Mon Sep 17 00:00:00 2001 From: Leila011 Date: Wed, 7 Aug 2024 10:47:23 +0200 Subject: [PATCH 06/15] config: update keywords --- src/agat/agat_sp_compare_two_annotations/config.vsh.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml b/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml index 5723084a..fd112b5a 100644 --- a/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml +++ b/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml @@ -21,7 +21,7 @@ description: | The script output a folder containing a report of number of different cases as well as a file per case type listing per line the gene feature's ID involved in each case. -keywords: [gene annotations, GTF conversion] +keywords: [gene annotations] links: homepage: https://github.com/NBISweden/AGAT documentation: https://agat.readthedocs.io/en/latest/tools/agat_sp_compare_two_annotations.html From 4d098c17709ca2fdc1f749cde2c55a3f42cc529b Mon Sep 17 00:00:00 2001 From: Leila011 Date: Wed, 7 Aug 2024 10:54:40 +0200 Subject: [PATCH 07/15] fix config --- src/agat/agat_sp_compare_two_annotations/config.vsh.yaml | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml b/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml index fd112b5a..8f90cc26 100644 --- a/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml +++ b/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml @@ -54,7 +54,7 @@ argument_groups: alternatives: [-o, --out] description: | Output folder. It contains a report that summarizes the type and number of cases, as well as a file per case type containing one case per line with the list of gene feature's ID (or other type of feature level1) from file1 then file2 separated by a |. - type: folder + type: string direction: output required: true example: output_folder @@ -68,7 +68,6 @@ argument_groups: alternatives: [-v] description: Verbose option, makes it easier to follow what is going on. type: boolean_true - example: true - name: --config alternatives: [-c] description: | From c2212de59caad62991b9501e46939adf3cc8be65 Mon Sep 17 00:00:00 2001 From: Leila011 Date: Wed, 7 Aug 2024 13:59:34 +0200 Subject: [PATCH 08/15] config: replace `-output` by `output_dir` --- src/agat/agat_sp_compare_two_annotations/config.vsh.yaml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml b/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml index 8f90cc26..e2d6c533 100644 --- a/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml +++ b/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml @@ -49,9 +49,9 @@ argument_groups: direction: input example: input2.gff - name: Outputs - arguments: - - name: --output - alternatives: [-o, --out] + arguments: + - name: --output_dir + alternatives: [-o, --out, --output] description: | Output folder. It contains a report that summarizes the type and number of cases, as well as a file per case type containing one case per line with the list of gene feature's ID (or other type of feature level1) from file1 then file2 separated by a |. type: string From 96318feb7854e6a2cfc5ed50e7d73ec42a495e8b Mon Sep 17 00:00:00 2001 From: Leila011 Date: Wed, 7 Aug 2024 14:04:30 +0200 Subject: [PATCH 09/15] add test --- .../agat_sp_compare_two_annotations/test.sh | 71 +++++++++++++++++++ 1 file changed, 71 insertions(+) create mode 100644 src/agat/agat_sp_compare_two_annotations/test.sh diff --git a/src/agat/agat_sp_compare_two_annotations/test.sh b/src/agat/agat_sp_compare_two_annotations/test.sh new file mode 100644 index 00000000..a825e754 --- /dev/null +++ b/src/agat/agat_sp_compare_two_annotations/test.sh @@ -0,0 +1,71 @@ +#!/bin/bash + +## VIASH START +## VIASH END + +test_dir="${meta_resources_dir}/test_data" + +echo "> Run $meta_name with test data: identical files" +"$meta_executable" \ + --gff1 "$test_dir/1.gff" \ + --gff2 "$test_dir/1.gff" \ + --output_dir out_data + +echo ">> Checking output" +[ ! -f "out_data/report.txt" ] && echo "Output file report.txt does not exist" && exit 1 + +echo ">> Check if output is empty" +[ ! -s "out_data/report.txt" ] && echo "Output file report.txt is empty" && exit 1 + +echo ">> Check if output matches expected output" +diff <(tail -n +2 "out_data/report.txt") <(tail -n +2 "$test_dir/agat_sp_compare_two_annotations_1.txt") +if [ $? -ne 0 ]; then + echo "Output file report.txt does not match expected output" + exit 1 +fi + +rm -rf out_data + +echo "> Run $meta_name with test data: different files" +"$meta_executable" \ + --gff1 "$test_dir/file1.gff" \ + --gff2 "$test_dir/file2.gff" \ + --output_dir out_data + +echo ">> Checking output" +[ ! -f "out_data/report.txt" ] && echo "Output file report.txt does not exist" && exit 1 + +echo ">> Check if output is empty" +[ ! -s "out_data/report.txt" ] && echo "Output file report.txt is empty" && exit 1 + +echo ">> Check if output matches expected output" +diff <(tail -n +2 "out_data/report.txt") <(tail -n +2 "$test_dir/agat_sp_compare_two_annotations_2.txt") +if [ $? -ne 0 ]; then + echo "Output file report.txt does not match expected output" + exit 1 +fi + +rm -rf out_data + +echo "> Run $meta_name with test data: different files" +"$meta_executable" \ + --gff1 "$test_dir/file2.gff" \ + --gff2 "$test_dir/file1.gff" \ + --output_dir out_data + +echo ">> Checking output" +[ ! -f "out_data/report.txt" ] && echo "Output file report.txt does not exist" && exit 1 + +echo ">> Check if output is empty" +[ ! -s "out_data/report.txt" ] && echo "Output file report.txt is empty" && exit 1 + +echo ">> Check if output matches expected output" +diff <(tail -n +2 "out_data/report.txt") <(tail -n +2 "$test_dir/agat_sp_compare_two_annotations_3.txt") +if [ $? -ne 0 ]; then + echo "Output file report.txt does not match expected output" + exit 1 +fi + +rm -rf out_data + +echo "> Test successful" \ No newline at end of file From eba7ecae62639d6a5bc4e9fc917500ebd1373a25 Mon Sep 17 00:00:00 2001 From: Leila011 Date: Wed, 7 Aug 2024 14:04:58 +0200 Subject: [PATCH 10/15] add extra test data & expected outputs --- .../agat_sp_compare_two_annotations_2.txt | 16 + .../agat_sp_compare_two_annotations_3.txt | 16 + .../test_data/file1.gff | 141 ++ .../test_data/file2.gff | 1232 +++++++++++++++++ .../test_data/script.sh | 6 +- 5 files changed, 1410 insertions(+), 1 deletion(-) create mode 100644 src/agat/agat_sp_compare_two_annotations/test_data/agat_sp_compare_two_annotations_2.txt create mode 100644 src/agat/agat_sp_compare_two_annotations/test_data/agat_sp_compare_two_annotations_3.txt create mode 100644 src/agat/agat_sp_compare_two_annotations/test_data/file1.gff create mode 100644 src/agat/agat_sp_compare_two_annotations/test_data/file2.gff diff --git a/src/agat/agat_sp_compare_two_annotations/test_data/agat_sp_compare_two_annotations_2.txt b/src/agat/agat_sp_compare_two_annotations/test_data/agat_sp_compare_two_annotations_2.txt new file mode 100644 index 00000000..8c3bde0d --- /dev/null +++ b/src/agat/agat_sp_compare_two_annotations/test_data/agat_sp_compare_two_annotations_2.txt @@ -0,0 +1,16 @@ +usage: bin/agat_sp_compare_two_annotations.pl --gff1 t/scripts_output/in/agat_sp_compare_two_annotations/file1.gff --gff2 t/scripts_output/in/agat_sp_compare_two_annotations/file2.gff -o tmp.gff +Results of number of genes from file1 that overlap genes from file2: + +---------------------------------------------------------------------------------------------- +| gene@mrna@cds | +---------------------------------------------------------------------------------------------- +| file1.gff | file2.gff | Number of cases | +---------------------------------------------------------------------------------------------- +| 1 | 0 | 7 | +| 3 | 1 | 1 | +---------------------------------------------------------------------------------------------- +Number gene in file1: 10 +Number gene in file2: 1 + + + diff --git a/src/agat/agat_sp_compare_two_annotations/test_data/agat_sp_compare_two_annotations_3.txt b/src/agat/agat_sp_compare_two_annotations/test_data/agat_sp_compare_two_annotations_3.txt new file mode 100644 index 00000000..d697c076 --- /dev/null +++ b/src/agat/agat_sp_compare_two_annotations/test_data/agat_sp_compare_two_annotations_3.txt @@ -0,0 +1,16 @@ +usage: bin/agat_sp_compare_two_annotations.pl --gff1 t/scripts_output/in/agat_sp_compare_two_annotations/file2.gff --gff2 t/scripts_output/in/agat_sp_compare_two_annotations/file1.gff -o tmp.gff +Results of number of genes from file1 that overlap genes from file2: + +---------------------------------------------------------------------------------------------- +| gene@mrna@cds | +---------------------------------------------------------------------------------------------- +| file2.gff | file1.gff | Number of cases | +---------------------------------------------------------------------------------------------- +| 0 | 1 | 7 | +| 1 | 3 | 1 | +---------------------------------------------------------------------------------------------- +Number gene in file2: 1 +Number gene in file1: 10 + + + diff --git a/src/agat/agat_sp_compare_two_annotations/test_data/file1.gff b/src/agat/agat_sp_compare_two_annotations/test_data/file1.gff new file mode 100644 index 00000000..a0e05def --- /dev/null +++ b/src/agat/agat_sp_compare_two_annotations/test_data/file1.gff @@ -0,0 +1,141 @@ +contig_corrected_v1_126 Helixer gene 4533981 4534152 . - . ID=herectifolium_contig_corrected_v1_126_000252 +contig_corrected_v1_126 Helixer mRNA 4533981 4534152 . - . ID=herectifolium_contig_corrected_v1_126_000252.1;Parent=herectifolium_contig_corrected_v1_126_000252 +contig_corrected_v1_126 Helixer exon 4533981 4534152 . - . ID=herectifolium_contig_corrected_v1_126_000252.1.exon.1;Parent=herectifolium_contig_corrected_v1_126_000252.1 +contig_corrected_v1_126 Helixer five_prime_UTR 4534139 4534152 . - . ID=herectifolium_contig_corrected_v1_126_000252.1.five_prime_UTR.1;Parent=herectifolium_contig_corrected_v1_126_000252.1 +contig_corrected_v1_126 Helixer CDS 4533986 4534138 . - 0 ID=herectifolium_contig_corrected_v1_126_000252.1.CDS.1;Parent=herectifolium_contig_corrected_v1_126_000252.1 +contig_corrected_v1_126 Helixer three_prime_UTR 4533981 4533985 . - . ID=herectifolium_contig_corrected_v1_126_000252.1.three_prime_UTR.1;Parent=herectifolium_contig_corrected_v1_126_000252.1 +contig_corrected_v1_126 Helixer gene 4533725 4533979 . - . ID=herectifolium_contig_corrected_v1_126_000253 +contig_corrected_v1_126 Helixer mRNA 4533725 4533979 . - . ID=herectifolium_contig_corrected_v1_126_000253.1;Parent=herectifolium_contig_corrected_v1_126_000253 +contig_corrected_v1_126 Helixer exon 4533725 4533979 . - . ID=herectifolium_contig_corrected_v1_126_000253.1.exon.1;Parent=herectifolium_contig_corrected_v1_126_000253.1 +contig_corrected_v1_126 Helixer five_prime_UTR 4533971 4533979 . - . ID=herectifolium_contig_corrected_v1_126_000253.1.five_prime_UTR.1;Parent=herectifolium_contig_corrected_v1_126_000253.1 +contig_corrected_v1_126 Helixer CDS 4533755 4533970 . - 0 ID=herectifolium_contig_corrected_v1_126_000253.1.CDS.1;Parent=herectifolium_contig_corrected_v1_126_000253.1 +contig_corrected_v1_126 Helixer three_prime_UTR 4533725 4533754 . - . ID=herectifolium_contig_corrected_v1_126_000253.1.three_prime_UTR.1;Parent=herectifolium_contig_corrected_v1_126_000253.1 +contig_corrected_v1_126 Helixer gene 4480058 4486009 . - . ID=herectifolium_contig_corrected_v1_126_000254 +contig_corrected_v1_126 Helixer mRNA 4480058 4486009 . - . ID=herectifolium_contig_corrected_v1_126_000254.1;Parent=herectifolium_contig_corrected_v1_126_000254 +contig_corrected_v1_126 Helixer exon 4485674 4486009 . - . ID=herectifolium_contig_corrected_v1_126_000254.1.exon.1;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer five_prime_UTR 4485674 4486009 . - . ID=herectifolium_contig_corrected_v1_126_000254.1.five_prime_UTR.1;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer exon 4485307 4485580 . - . ID=herectifolium_contig_corrected_v1_126_000254.1.exon.2;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer five_prime_UTR 4485571 4485580 . - . ID=herectifolium_contig_corrected_v1_126_000254.1.five_prime_UTR.2;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer CDS 4485307 4485570 . - 0 ID=herectifolium_contig_corrected_v1_126_000254.1.CDS.1;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer exon 4484838 4485099 . - . ID=herectifolium_contig_corrected_v1_126_000254.1.exon.3;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer CDS 4484838 4485099 . - 0 ID=herectifolium_contig_corrected_v1_126_000254.1.CDS.2;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer exon 4484445 4484661 . - . ID=herectifolium_contig_corrected_v1_126_000254.1.exon.4;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer CDS 4484445 4484661 . - 2 ID=herectifolium_contig_corrected_v1_126_000254.1.CDS.3;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer exon 4484226 4484349 . - . ID=herectifolium_contig_corrected_v1_126_000254.1.exon.5;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer CDS 4484226 4484349 . - 1 ID=herectifolium_contig_corrected_v1_126_000254.1.CDS.4;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer exon 4483775 4483957 . - . ID=herectifolium_contig_corrected_v1_126_000254.1.exon.6;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer CDS 4483775 4483957 . - 0 ID=herectifolium_contig_corrected_v1_126_000254.1.CDS.5;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer exon 4483155 4483377 . - . ID=herectifolium_contig_corrected_v1_126_000254.1.exon.7;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer CDS 4483155 4483377 . - 0 ID=herectifolium_contig_corrected_v1_126_000254.1.CDS.6;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer exon 4482936 4483102 . - . ID=herectifolium_contig_corrected_v1_126_000254.1.exon.8;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer CDS 4482936 4483102 . - 2 ID=herectifolium_contig_corrected_v1_126_000254.1.CDS.7;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer exon 4482666 4482828 . - . ID=herectifolium_contig_corrected_v1_126_000254.1.exon.9;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer CDS 4482666 4482828 . - 0 ID=herectifolium_contig_corrected_v1_126_000254.1.CDS.8;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer exon 4482552 4482566 . - . ID=herectifolium_contig_corrected_v1_126_000254.1.exon.10;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer CDS 4482552 4482566 . - 2 ID=herectifolium_contig_corrected_v1_126_000254.1.CDS.9;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer exon 4480058 4482484 . - . ID=herectifolium_contig_corrected_v1_126_000254.1.exon.11;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer CDS 4480161 4482484 . - 2 ID=herectifolium_contig_corrected_v1_126_000254.1.CDS.10;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer three_prime_UTR 4480058 4480160 . - . ID=herectifolium_contig_corrected_v1_126_000254.1.three_prime_UTR.1;Parent=herectifolium_contig_corrected_v1_126_000254.1 +contig_corrected_v1_126 Helixer gene 4477746 4478157 . - . ID=herectifolium_contig_corrected_v1_126_000255 +contig_corrected_v1_126 Helixer mRNA 4477746 4478157 . - . ID=herectifolium_contig_corrected_v1_126_000255.1;Parent=herectifolium_contig_corrected_v1_126_000255 +contig_corrected_v1_126 Helixer exon 4477932 4478157 . - . ID=herectifolium_contig_corrected_v1_126_000255.1.exon.1;Parent=herectifolium_contig_corrected_v1_126_000255.1 +contig_corrected_v1_126 Helixer five_prime_UTR 4478001 4478157 . - . ID=herectifolium_contig_corrected_v1_126_000255.1.five_prime_UTR.1;Parent=herectifolium_contig_corrected_v1_126_000255.1 +contig_corrected_v1_126 Helixer CDS 4477932 4478000 . - 0 ID=herectifolium_contig_corrected_v1_126_000255.1.CDS.1;Parent=herectifolium_contig_corrected_v1_126_000255.1 +contig_corrected_v1_126 Helixer exon 4477746 4477785 . - . ID=herectifolium_contig_corrected_v1_126_000255.1.exon.2;Parent=herectifolium_contig_corrected_v1_126_000255.1 +contig_corrected_v1_126 Helixer CDS 4477747 4477785 . - 0 ID=herectifolium_contig_corrected_v1_126_000255.1.CDS.2;Parent=herectifolium_contig_corrected_v1_126_000255.1 +contig_corrected_v1_126 Helixer three_prime_UTR 4477746 4477746 . - . ID=herectifolium_contig_corrected_v1_126_000255.1.three_prime_UTR.1;Parent=herectifolium_contig_corrected_v1_126_000255.1 +contig_corrected_v1_126 Helixer gene 4475538 4477744 . - . ID=herectifolium_contig_corrected_v1_126_000256 +contig_corrected_v1_126 Helixer mRNA 4475538 4477744 . - . ID=herectifolium_contig_corrected_v1_126_000256.1;Parent=herectifolium_contig_corrected_v1_126_000256 +contig_corrected_v1_126 Helixer exon 4477640 4477744 . - . ID=herectifolium_contig_corrected_v1_126_000256.1.exon.1;Parent=herectifolium_contig_corrected_v1_126_000256.1 +contig_corrected_v1_126 Helixer five_prime_UTR 4477740 4477744 . - . ID=herectifolium_contig_corrected_v1_126_000256.1.five_prime_UTR.1;Parent=herectifolium_contig_corrected_v1_126_000256.1 +contig_corrected_v1_126 Helixer CDS 4477640 4477739 . - 0 ID=herectifolium_contig_corrected_v1_126_000256.1.CDS.1;Parent=herectifolium_contig_corrected_v1_126_000256.1 +contig_corrected_v1_126 Helixer exon 4477301 4477363 . - . ID=herectifolium_contig_corrected_v1_126_000256.1.exon.2;Parent=herectifolium_contig_corrected_v1_126_000256.1 +contig_corrected_v1_126 Helixer CDS 4477301 4477363 . - 2 ID=herectifolium_contig_corrected_v1_126_000256.1.CDS.2;Parent=herectifolium_contig_corrected_v1_126_000256.1 +contig_corrected_v1_126 Helixer exon 4476352 4476359 . - . ID=herectifolium_contig_corrected_v1_126_000256.1.exon.3;Parent=herectifolium_contig_corrected_v1_126_000256.1 +contig_corrected_v1_126 Helixer CDS 4476352 4476359 . - 2 ID=herectifolium_contig_corrected_v1_126_000256.1.CDS.3;Parent=herectifolium_contig_corrected_v1_126_000256.1 +contig_corrected_v1_126 Helixer exon 4475538 4476238 . - . ID=herectifolium_contig_corrected_v1_126_000256.1.exon.4;Parent=herectifolium_contig_corrected_v1_126_000256.1 +contig_corrected_v1_126 Helixer CDS 4475843 4476238 . - 0 ID=herectifolium_contig_corrected_v1_126_000256.1.CDS.4;Parent=herectifolium_contig_corrected_v1_126_000256.1 +contig_corrected_v1_126 Helixer three_prime_UTR 4475538 4475842 . - . ID=herectifolium_contig_corrected_v1_126_000256.1.three_prime_UTR.1;Parent=herectifolium_contig_corrected_v1_126_000256.1 +contig_corrected_v1_126 Helixer gene 4328686 4329330 . - . ID=herectifolium_contig_corrected_v1_126_000257 +contig_corrected_v1_126 Helixer mRNA 4328686 4329330 . - . ID=herectifolium_contig_corrected_v1_126_000257.1;Parent=herectifolium_contig_corrected_v1_126_000257 +contig_corrected_v1_126 Helixer exon 4328966 4329330 . - . ID=herectifolium_contig_corrected_v1_126_000257.1.exon.1;Parent=herectifolium_contig_corrected_v1_126_000257.1 +contig_corrected_v1_126 Helixer five_prime_UTR 4329302 4329330 . - . ID=herectifolium_contig_corrected_v1_126_000257.1.five_prime_UTR.1;Parent=herectifolium_contig_corrected_v1_126_000257.1 +contig_corrected_v1_126 Helixer CDS 4328996 4329301 . - 0 ID=herectifolium_contig_corrected_v1_126_000257.1.CDS.1;Parent=herectifolium_contig_corrected_v1_126_000257.1 +contig_corrected_v1_126 Helixer three_prime_UTR 4328966 4328995 . - . ID=herectifolium_contig_corrected_v1_126_000257.1.three_prime_UTR.1;Parent=herectifolium_contig_corrected_v1_126_000257.1 +contig_corrected_v1_126 Helixer exon 4328756 4328820 . - . ID=herectifolium_contig_corrected_v1_126_000257.1.exon.2;Parent=herectifolium_contig_corrected_v1_126_000257.1 +contig_corrected_v1_126 Helixer three_prime_UTR 4328756 4328820 . - . ID=herectifolium_contig_corrected_v1_126_000257.1.three_prime_UTR.2;Parent=herectifolium_contig_corrected_v1_126_000257.1 +contig_corrected_v1_126 Helixer exon 4328686 4328697 . - . ID=herectifolium_contig_corrected_v1_126_000257.1.exon.3;Parent=herectifolium_contig_corrected_v1_126_000257.1 +contig_corrected_v1_126 Helixer three_prime_UTR 4328686 4328697 . - . ID=herectifolium_contig_corrected_v1_126_000257.1.three_prime_UTR.3;Parent=herectifolium_contig_corrected_v1_126_000257.1 +contig_corrected_v1_126 Helixer gene 4327633 4328684 . - . ID=herectifolium_contig_corrected_v1_126_000258 +contig_corrected_v1_126 Helixer mRNA 4327633 4328684 . - . ID=herectifolium_contig_corrected_v1_126_000258.1;Parent=herectifolium_contig_corrected_v1_126_000258 +contig_corrected_v1_126 Helixer exon 4328524 4328684 . - . ID=herectifolium_contig_corrected_v1_126_000258.1.exon.1;Parent=herectifolium_contig_corrected_v1_126_000258.1 +contig_corrected_v1_126 Helixer five_prime_UTR 4328668 4328684 . - . ID=herectifolium_contig_corrected_v1_126_000258.1.five_prime_UTR.1;Parent=herectifolium_contig_corrected_v1_126_000258.1 +contig_corrected_v1_126 Helixer CDS 4328524 4328667 . - 0 ID=herectifolium_contig_corrected_v1_126_000258.1.CDS.1;Parent=herectifolium_contig_corrected_v1_126_000258.1 +contig_corrected_v1_126 Helixer exon 4328116 4328312 . - . ID=herectifolium_contig_corrected_v1_126_000258.1.exon.2;Parent=herectifolium_contig_corrected_v1_126_000258.1 +contig_corrected_v1_126 Helixer CDS 4328116 4328312 . - 0 ID=herectifolium_contig_corrected_v1_126_000258.1.CDS.2;Parent=herectifolium_contig_corrected_v1_126_000258.1 +contig_corrected_v1_126 Helixer exon 4327929 4328021 . - . ID=herectifolium_contig_corrected_v1_126_000258.1.exon.3;Parent=herectifolium_contig_corrected_v1_126_000258.1 +contig_corrected_v1_126 Helixer CDS 4327929 4328021 . - 1 ID=herectifolium_contig_corrected_v1_126_000258.1.CDS.3;Parent=herectifolium_contig_corrected_v1_126_000258.1 +contig_corrected_v1_126 Helixer exon 4327633 4327850 . - . ID=herectifolium_contig_corrected_v1_126_000258.1.exon.4;Parent=herectifolium_contig_corrected_v1_126_000258.1 +contig_corrected_v1_126 Helixer CDS 4327640 4327850 . - 1 ID=herectifolium_contig_corrected_v1_126_000258.1.CDS.4;Parent=herectifolium_contig_corrected_v1_126_000258.1 +contig_corrected_v1_126 Helixer three_prime_UTR 4327633 4327639 . - . ID=herectifolium_contig_corrected_v1_126_000258.1.three_prime_UTR.1;Parent=herectifolium_contig_corrected_v1_126_000258.1 +contig_corrected_v1_126 Helixer gene 4326396 4327579 . - . ID=herectifolium_contig_corrected_v1_126_000259 +contig_corrected_v1_126 Helixer mRNA 4326396 4327579 . - . ID=herectifolium_contig_corrected_v1_126_000259.1;Parent=herectifolium_contig_corrected_v1_126_000259 +contig_corrected_v1_126 Helixer exon 4327426 4327579 . - . ID=herectifolium_contig_corrected_v1_126_000259.1.exon.1;Parent=herectifolium_contig_corrected_v1_126_000259.1 +contig_corrected_v1_126 Helixer five_prime_UTR 4327579 4327579 . - . ID=herectifolium_contig_corrected_v1_126_000259.1.five_prime_UTR.1;Parent=herectifolium_contig_corrected_v1_126_000259.1 +contig_corrected_v1_126 Helixer CDS 4327426 4327578 . - 0 ID=herectifolium_contig_corrected_v1_126_000259.1.CDS.1;Parent=herectifolium_contig_corrected_v1_126_000259.1 +contig_corrected_v1_126 Helixer exon 4326975 4327158 . - . ID=herectifolium_contig_corrected_v1_126_000259.1.exon.2;Parent=herectifolium_contig_corrected_v1_126_000259.1 +contig_corrected_v1_126 Helixer CDS 4326975 4327158 . - 0 ID=herectifolium_contig_corrected_v1_126_000259.1.CDS.2;Parent=herectifolium_contig_corrected_v1_126_000259.1 +contig_corrected_v1_126 Helixer exon 4326579 4326651 . - . ID=herectifolium_contig_corrected_v1_126_000259.1.exon.3;Parent=herectifolium_contig_corrected_v1_126_000259.1 +contig_corrected_v1_126 Helixer CDS 4326579 4326651 . - 2 ID=herectifolium_contig_corrected_v1_126_000259.1.CDS.3;Parent=herectifolium_contig_corrected_v1_126_000259.1 +contig_corrected_v1_126 Helixer exon 4326396 4326397 . - . ID=herectifolium_contig_corrected_v1_126_000259.1.exon.4;Parent=herectifolium_contig_corrected_v1_126_000259.1 +contig_corrected_v1_126 Helixer CDS 4326397 4326397 . - 1 ID=herectifolium_contig_corrected_v1_126_000259.1.CDS.4;Parent=herectifolium_contig_corrected_v1_126_000259.1 +contig_corrected_v1_126 Helixer three_prime_UTR 4326396 4326396 . - . ID=herectifolium_contig_corrected_v1_126_000259.1.three_prime_UTR.1;Parent=herectifolium_contig_corrected_v1_126_000259.1 +contig_corrected_v1_126 Helixer gene 4323421 4325169 . - . ID=herectifolium_contig_corrected_v1_126_000260 +contig_corrected_v1_126 Helixer mRNA 4323421 4325169 . - . ID=herectifolium_contig_corrected_v1_126_000260.1;Parent=herectifolium_contig_corrected_v1_126_000260 +contig_corrected_v1_126 Helixer exon 4325169 4325169 . - . ID=herectifolium_contig_corrected_v1_126_000260.1.exon.1;Parent=herectifolium_contig_corrected_v1_126_000260.1 +contig_corrected_v1_126 Helixer five_prime_UTR 4325169 4325169 . - . ID=herectifolium_contig_corrected_v1_126_000260.1.five_prime_UTR.1;Parent=herectifolium_contig_corrected_v1_126_000260.1 +contig_corrected_v1_126 Helixer exon 4325100 4325103 . - . ID=herectifolium_contig_corrected_v1_126_000260.1.exon.2;Parent=herectifolium_contig_corrected_v1_126_000260.1 +contig_corrected_v1_126 Helixer CDS 4325100 4325103 . - 0 ID=herectifolium_contig_corrected_v1_126_000260.1.CDS.1;Parent=herectifolium_contig_corrected_v1_126_000260.1 +contig_corrected_v1_126 Helixer exon 4323421 4324792 . - . ID=herectifolium_contig_corrected_v1_126_000260.1.exon.3;Parent=herectifolium_contig_corrected_v1_126_000260.1 +contig_corrected_v1_126 Helixer CDS 4323423 4324792 . - 2 ID=herectifolium_contig_corrected_v1_126_000260.1.CDS.2;Parent=herectifolium_contig_corrected_v1_126_000260.1 +contig_corrected_v1_126 Helixer three_prime_UTR 4323421 4323422 . - . ID=herectifolium_contig_corrected_v1_126_000260.1.three_prime_UTR.1;Parent=herectifolium_contig_corrected_v1_126_000260.1 +contig_corrected_v1_126 Helixer gene 4315918 4320583 . - . ID=herectifolium_contig_corrected_v1_126_000261 +contig_corrected_v1_126 Helixer mRNA 4315918 4320583 . - . ID=herectifolium_contig_corrected_v1_126_000261.1;Parent=herectifolium_contig_corrected_v1_126_000261 +contig_corrected_v1_126 Helixer exon 4320369 4320583 . - . ID=herectifolium_contig_corrected_v1_126_000261.1.exon.1;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer five_prime_UTR 4320438 4320583 . - . ID=herectifolium_contig_corrected_v1_126_000261.1.five_prime_UTR.1;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer CDS 4320369 4320437 . - 0 ID=herectifolium_contig_corrected_v1_126_000261.1.CDS.1;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer exon 4320166 4320225 . - . ID=herectifolium_contig_corrected_v1_126_000261.1.exon.2;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer CDS 4320166 4320225 . - 0 ID=herectifolium_contig_corrected_v1_126_000261.1.CDS.2;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer exon 4319986 4320067 . - . ID=herectifolium_contig_corrected_v1_126_000261.1.exon.3;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer CDS 4319986 4320067 . - 0 ID=herectifolium_contig_corrected_v1_126_000261.1.CDS.3;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer exon 4319647 4319709 . - . ID=herectifolium_contig_corrected_v1_126_000261.1.exon.4;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer CDS 4319647 4319709 . - 2 ID=herectifolium_contig_corrected_v1_126_000261.1.CDS.4;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer exon 4319177 4319178 . - . ID=herectifolium_contig_corrected_v1_126_000261.1.exon.5;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer CDS 4319177 4319178 . - 2 ID=herectifolium_contig_corrected_v1_126_000261.1.CDS.5;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer exon 4319009 4319085 . - . ID=herectifolium_contig_corrected_v1_126_000261.1.exon.6;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer CDS 4319009 4319085 . - 0 ID=herectifolium_contig_corrected_v1_126_000261.1.CDS.6;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer exon 4318592 4318637 . - . ID=herectifolium_contig_corrected_v1_126_000261.1.exon.7;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer CDS 4318592 4318637 . - 1 ID=herectifolium_contig_corrected_v1_126_000261.1.CDS.7;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer exon 4318443 4318505 . - . ID=herectifolium_contig_corrected_v1_126_000261.1.exon.8;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer CDS 4318443 4318505 . - 0 ID=herectifolium_contig_corrected_v1_126_000261.1.CDS.8;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer exon 4318122 4318188 . - . ID=herectifolium_contig_corrected_v1_126_000261.1.exon.9;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer CDS 4318122 4318188 . - 0 ID=herectifolium_contig_corrected_v1_126_000261.1.CDS.9;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer exon 4317971 4318039 . - . ID=herectifolium_contig_corrected_v1_126_000261.1.exon.10;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer CDS 4317971 4318039 . - 2 ID=herectifolium_contig_corrected_v1_126_000261.1.CDS.10;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer exon 4317811 4317880 . - . ID=herectifolium_contig_corrected_v1_126_000261.1.exon.11;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer CDS 4317811 4317880 . - 2 ID=herectifolium_contig_corrected_v1_126_000261.1.CDS.11;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer exon 4317648 4317709 . - . ID=herectifolium_contig_corrected_v1_126_000261.1.exon.12;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer CDS 4317648 4317709 . - 1 ID=herectifolium_contig_corrected_v1_126_000261.1.CDS.12;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer exon 4317444 4317564 . - . ID=herectifolium_contig_corrected_v1_126_000261.1.exon.13;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer CDS 4317444 4317564 . - 2 ID=herectifolium_contig_corrected_v1_126_000261.1.CDS.13;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer exon 4317287 4317359 . - . ID=herectifolium_contig_corrected_v1_126_000261.1.exon.14;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer CDS 4317287 4317359 . - 1 ID=herectifolium_contig_corrected_v1_126_000261.1.CDS.14;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer exon 4317096 4317158 . - . ID=herectifolium_contig_corrected_v1_126_000261.1.exon.15;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer CDS 4317096 4317158 . - 0 ID=herectifolium_contig_corrected_v1_126_000261.1.CDS.15;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer exon 4316977 4317015 . - . ID=herectifolium_contig_corrected_v1_126_000261.1.exon.16;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer CDS 4316977 4317015 . - 0 ID=herectifolium_contig_corrected_v1_126_000261.1.CDS.16;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer exon 4316724 4316894 . - . ID=herectifolium_contig_corrected_v1_126_000261.1.exon.17;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer CDS 4316724 4316894 . - 0 ID=herectifolium_contig_corrected_v1_126_000261.1.CDS.17;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer exon 4315918 4316589 . - . ID=herectifolium_contig_corrected_v1_126_000261.1.exon.18;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer CDS 4316479 4316589 . - 0 ID=herectifolium_contig_corrected_v1_126_000261.1.CDS.18;Parent=herectifolium_contig_corrected_v1_126_000261.1 +contig_corrected_v1_126 Helixer three_prime_UTR 4315918 4316478 . - . ID=herectifolium_contig_corrected_v1_126_000261.1.three_prime_UTR.1;Parent=herectifolium_contig_corrected_v1_126_000261.1 diff --git a/src/agat/agat_sp_compare_two_annotations/test_data/file2.gff b/src/agat/agat_sp_compare_two_annotations/test_data/file2.gff new file mode 100644 index 00000000..f58327c9 --- /dev/null +++ b/src/agat/agat_sp_compare_two_annotations/test_data/file2.gff @@ -0,0 +1,1232 @@ +contig_corrected_v1_126 transdecoder gene 4315980 4478126 . - . ID=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder mRNA 4316042 4320473 . - . ID=PB.38132.12.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder exon 4320369 4320473 . - . ID=PB.38132.12.p1.exon1;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320471 . - 0 ID=cds.PB.38132.12.p1;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320225 . - . ID=PB.38132.12.p1.exon2;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320225 . - 2 ID=cds.PB.38132.12.p1;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.12.p1.exon3;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.12.p1;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.12.p1.exon4;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.12.p1;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.12.p1.exon5;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.12.p1;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.12.p1.exon6;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.12.p1;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.12.p1.exon7;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.12.p1;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.12.p1.exon8;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.12.p1;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.12.p1.exon9;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.12.p1;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.12.p1.exon10;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.12.p1;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.12.p1.exon11;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.12.p1;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder exon 4317250 4317564 . - . ID=PB.38132.12.p1.exon12;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder CDS 4317392 4317564 . - 2 ID=cds.PB.38132.12.p1;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.12.p1.exon13;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.12.p1.exon14;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.12.p1.exon15;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder exon 4316042 4316589 . - . ID=PB.38132.12.p1.exon16;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317250 4317391 . - . ID=PB.38132.12.p1.utr3p1;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317096 4317158 . - . ID=PB.38132.12.p1.utr3p2;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316977 4317015 . - . ID=PB.38132.12.p1.utr3p3;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316724 4316894 . - . ID=PB.38132.12.p1.utr3p4;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316042 4316589 . - . ID=PB.38132.12.p1.utr3p5;Parent=PB.38132.12.p1 +contig_corrected_v1_126 transdecoder mRNA 4316049 4320577 . - . ID=PB.38132.14.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder exon 4320369 4320577 . - . ID=PB.38132.14.p1.exon1;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320576 . - 0 ID=cds.PB.38132.14.p1;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320225 . - . ID=PB.38132.14.p1.exon2;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320225 . - 2 ID=cds.PB.38132.14.p1;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.14.p1.exon3;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.14.p1;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.14.p1.exon4;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.14.p1;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.14.p1.exon5;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.14.p1;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.14.p1.exon6;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.14.p1;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.14.p1.exon7;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.14.p1;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.14.p1.exon8;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.14.p1;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.14.p1.exon9;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.14.p1;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.14.p1.exon10;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.14.p1;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.14.p1.exon11;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.14.p1;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.14.p1.exon12;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.14.p1;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.14.p1.exon13;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder CDS 4317287 4317380 . - 1 ID=cds.PB.38132.14.p1;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.14.p1.exon14;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder CDS 4317096 4317158 . - 0 ID=cds.PB.38132.14.p1;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.14.p1.exon15;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder CDS 4316977 4317015 . - 0 ID=cds.PB.38132.14.p1;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.14.p1.exon16;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder CDS 4316724 4316894 . - 0 ID=cds.PB.38132.14.p1;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder exon 4316049 4316589 . - . ID=PB.38132.14.p1.exon17;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder CDS 4316479 4316589 . - 0 ID=cds.PB.38132.14.p1;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316049 4316478 . - . ID=PB.38132.14.p1.utr3p1;Parent=PB.38132.14.p1 +contig_corrected_v1_126 transdecoder mRNA 4316049 4320474 . - . ID=PB.38132.17.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320438 4320474 . - . ID=PB.38132.17.p1.utr5p1;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320474 . - . ID=PB.38132.17.p1.exon1;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320437 . - 0 ID=cds.PB.38132.17.p1;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.17.p1.exon2;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder CDS 4320166 4320225 . - 0 ID=cds.PB.38132.17.p1;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320067 . - . ID=PB.38132.17.p1.exon3;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320067 . - 0 ID=cds.PB.38132.17.p1;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.17.p1.exon4;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.17.p1;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.17.p1.exon5;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.17.p1;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.17.p1.exon6;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.17.p1;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.17.p1.exon7;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.17.p1;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.17.p1.exon8;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.17.p1;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.17.p1.exon9;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.17.p1;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.17.p1.exon10;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.17.p1;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.17.p1.exon11;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.17.p1;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.17.p1.exon12;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.17.p1;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.17.p1.exon13;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.17.p1;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder exon 4317250 4317380 . - . ID=PB.38132.17.p1.exon14;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder CDS 4317250 4317380 . - 1 ID=cds.PB.38132.17.p1;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.17.p1.exon15;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder CDS 4317133 4317158 . - 2 ID=cds.PB.38132.17.p1;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.17.p1.exon16;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.17.p1.exon17;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder exon 4316049 4316589 . - . ID=PB.38132.17.p1.exon18;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317096 4317132 . - . ID=PB.38132.17.p1.utr3p1;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316977 4317015 . - . ID=PB.38132.17.p1.utr3p2;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316724 4316894 . - . ID=PB.38132.17.p1.utr3p3;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316049 4316589 . - . ID=PB.38132.17.p1.utr3p4;Parent=PB.38132.17.p1 +contig_corrected_v1_126 transdecoder mRNA 4315980 4320570 . - . ID=PB.38132.2.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320438 4320570 . - . ID=PB.38132.2.p1.utr5p1;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320570 . - . ID=PB.38132.2.p1.exon1;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320437 . - 0 ID=cds.PB.38132.2.p1;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.2.p1.exon2;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder CDS 4320166 4320225 . - 0 ID=cds.PB.38132.2.p1;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320079 . - . ID=PB.38132.2.p1.exon3;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320079 . - 0 ID=cds.PB.38132.2.p1;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.2.p1.exon4;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.2.p1;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.2.p1.exon5;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.2.p1;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.2.p1.exon6;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.2.p1;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.2.p1.exon7;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.2.p1;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.2.p1.exon8;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.2.p1;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.2.p1.exon9;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.2.p1;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.2.p1.exon10;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.2.p1;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.2.p1.exon11;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.2.p1;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.2.p1.exon12;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.2.p1;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.2.p1.exon13;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.2.p1;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.2.p1.exon14;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder CDS 4317287 4317380 . - 1 ID=cds.PB.38132.2.p1;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.2.p1.exon15;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder CDS 4317096 4317158 . - 0 ID=cds.PB.38132.2.p1;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.2.p1.exon16;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder CDS 4316977 4317015 . - 0 ID=cds.PB.38132.2.p1;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.2.p1.exon17;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder CDS 4316724 4316894 . - 0 ID=cds.PB.38132.2.p1;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder exon 4315980 4316589 . - . ID=PB.38132.2.p1.exon18;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder CDS 4316479 4316589 . - 0 ID=cds.PB.38132.2.p1;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4315980 4316478 . - . ID=PB.38132.2.p1.utr3p1;Parent=PB.38132.2.p1 +contig_corrected_v1_126 transdecoder mRNA 4316054 4320493 . - . ID=PB.38132.20.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder exon 4320369 4320493 . - . ID=PB.38132.20.p1.exon1;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320492 . - 0 ID=cds.PB.38132.20.p1;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320225 . - . ID=PB.38132.20.p1.exon2;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320225 . - 2 ID=cds.PB.38132.20.p1;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.20.p1.exon3;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.20.p1;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.20.p1.exon4;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.20.p1;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.20.p1.exon5;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.20.p1;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.20.p1.exon6;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.20.p1;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.20.p1.exon7;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.20.p1;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.20.p1.exon8;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.20.p1;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.20.p1.exon9;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.20.p1;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.20.p1.exon10;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.20.p1;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.20.p1.exon11;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.20.p1;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317564 . - . ID=PB.38132.20.p1.exon12;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder CDS 4317392 4317564 . - 2 ID=cds.PB.38132.20.p1;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.20.p1.exon13;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.20.p1.exon14;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.20.p1.exon15;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder exon 4316054 4316589 . - . ID=PB.38132.20.p1.exon16;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317287 4317391 . - . ID=PB.38132.20.p1.utr3p1;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317096 4317158 . - . ID=PB.38132.20.p1.utr3p2;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316977 4317015 . - . ID=PB.38132.20.p1.utr3p3;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316724 4316894 . - . ID=PB.38132.20.p1.utr3p4;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316054 4316589 . - . ID=PB.38132.20.p1.utr3p5;Parent=PB.38132.20.p1 +contig_corrected_v1_126 transdecoder mRNA 4316054 4320516 . - . ID=PB.38132.22.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320369 4320516 . - . ID=PB.38132.22.p1.utr5p1;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320166 4320225 . - . ID=PB.38132.22.p1.utr5p2;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319986 4320061 . - . ID=PB.38132.22.p1.utr5p3;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319647 4319709 . - . ID=PB.38132.22.p1.utr5p4;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319148 4319182 . - . ID=PB.38132.22.p1.utr5p5;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319009 4319085 . - . ID=PB.38132.22.p1.utr5p6;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4318592 4318623 . - . ID=PB.38132.22.p1.utr5p7;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4318449 4318505 . - . ID=PB.38132.22.p1.utr5p8;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320516 . - . ID=PB.38132.22.p1.exon1;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.22.p1.exon2;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320061 . - . ID=PB.38132.22.p1.exon3;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.22.p1.exon4;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.22.p1.exon5;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.22.p1.exon6;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318623 . - . ID=PB.38132.22.p1.exon7;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.22.p1.exon8;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318448 . - 0 ID=cds.PB.38132.22.p1;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.22.p1.exon9;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.22.p1;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.22.p1.exon10;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.22.p1;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.22.p1.exon11;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.22.p1;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.22.p1.exon12;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.22.p1;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.22.p1.exon13;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.22.p1;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.22.p1.exon14;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder CDS 4317287 4317380 . - 1 ID=cds.PB.38132.22.p1;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.22.p1.exon15;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder CDS 4317096 4317158 . - 0 ID=cds.PB.38132.22.p1;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.22.p1.exon16;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder CDS 4316977 4317015 . - 0 ID=cds.PB.38132.22.p1;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.22.p1.exon17;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder CDS 4316724 4316894 . - 0 ID=cds.PB.38132.22.p1;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder exon 4316054 4316589 . - . ID=PB.38132.22.p1.exon18;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder CDS 4316479 4316589 . - 0 ID=cds.PB.38132.22.p1;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316054 4316478 . - . ID=PB.38132.22.p1.utr3p1;Parent=PB.38132.22.p1 +contig_corrected_v1_126 transdecoder mRNA 4316054 4320493 . - . ID=PB.38132.24.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320369 4320493 . - . ID=PB.38132.24.p1.utr5p1;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320166 4320225 . - . ID=PB.38132.24.p1.utr5p2;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319986 4320061 . - . ID=PB.38132.24.p1.utr5p3;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319647 4319709 . - . ID=PB.38132.24.p1.utr5p4;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319062 4319182 . - . ID=PB.38132.24.p1.utr5p5;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320493 . - . ID=PB.38132.24.p1.exon1;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.24.p1.exon2;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320061 . - . ID=PB.38132.24.p1.exon3;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.24.p1.exon4;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319182 . - . ID=PB.38132.24.p1.exon5;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319061 . - 0 ID=cds.PB.38132.24.p1;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.24.p1.exon6;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.24.p1;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.24.p1.exon7;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.24.p1;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.24.p1.exon8;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.24.p1;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.24.p1.exon9;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.24.p1;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.24.p1.exon10;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.24.p1;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.24.p1.exon11;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.24.p1;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317564 . - . ID=PB.38132.24.p1.exon12;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder CDS 4317392 4317564 . - 2 ID=cds.PB.38132.24.p1;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.24.p1.exon13;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.24.p1.exon14;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.24.p1.exon15;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder exon 4316054 4316589 . - . ID=PB.38132.24.p1.exon16;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317287 4317391 . - . ID=PB.38132.24.p1.utr3p1;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317096 4317158 . - . ID=PB.38132.24.p1.utr3p2;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316977 4317015 . - . ID=PB.38132.24.p1.utr3p3;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316724 4316894 . - . ID=PB.38132.24.p1.utr3p4;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316054 4316589 . - . ID=PB.38132.24.p1.utr3p5;Parent=PB.38132.24.p1 +contig_corrected_v1_126 transdecoder mRNA 4316054 4320514 . - . ID=PB.38132.25.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320369 4320514 . - . ID=PB.38132.25.p1.utr5p1;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319986 4320225 . - . ID=PB.38132.25.p1.utr5p2;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319062 4319709 . - . ID=PB.38132.25.p1.utr5p3;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320514 . - . ID=PB.38132.25.p1.exon1;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320225 . - . ID=PB.38132.25.p1.exon2;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319709 . - . ID=PB.38132.25.p1.exon3;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319061 . - 0 ID=cds.PB.38132.25.p1;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.25.p1.exon4;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.25.p1;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.25.p1.exon5;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.25.p1;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.25.p1.exon6;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.25.p1;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.25.p1.exon7;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.25.p1;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.25.p1.exon8;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.25.p1;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.25.p1.exon9;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.25.p1;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.25.p1.exon10;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.25.p1;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.25.p1.exon11;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder CDS 4317287 4317380 . - 1 ID=cds.PB.38132.25.p1;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.25.p1.exon12;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder CDS 4317096 4317158 . - 0 ID=cds.PB.38132.25.p1;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4317015 . - . ID=PB.38132.25.p1.exon13;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder CDS 4316857 4317015 . - 0 ID=cds.PB.38132.25.p1;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder exon 4316054 4316589 . - . ID=PB.38132.25.p1.exon14;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316724 4316856 . - . ID=PB.38132.25.p1.utr3p1;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316054 4316589 . - . ID=PB.38132.25.p1.utr3p2;Parent=PB.38132.25.p1 +contig_corrected_v1_126 transdecoder mRNA 4316057 4320493 . - . ID=PB.38132.26.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320369 4320493 . - . ID=PB.38132.26.p1.utr5p1;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319986 4320225 . - . ID=PB.38132.26.p1.utr5p2;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319647 4319709 . - . ID=PB.38132.26.p1.utr5p3;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319062 4319113 . - . ID=PB.38132.26.p1.utr5p4;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320493 . - . ID=PB.38132.26.p1.exon1;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320225 . - . ID=PB.38132.26.p1.exon2;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.26.p1.exon3;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319113 . - . ID=PB.38132.26.p1.exon4;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319061 . - 0 ID=cds.PB.38132.26.p1;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.26.p1.exon5;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.26.p1;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.26.p1.exon6;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.26.p1;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.26.p1.exon7;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.26.p1;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.26.p1.exon8;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.26.p1;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.26.p1.exon9;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.26.p1;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.26.p1.exon10;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.26.p1;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.26.p1.exon11;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.26.p1;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.26.p1.exon12;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder CDS 4317287 4317380 . - 1 ID=cds.PB.38132.26.p1;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.26.p1.exon13;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder CDS 4317096 4317158 . - 0 ID=cds.PB.38132.26.p1;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.26.p1.exon14;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder CDS 4316977 4317015 . - 0 ID=cds.PB.38132.26.p1;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.26.p1.exon15;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder CDS 4316724 4316894 . - 0 ID=cds.PB.38132.26.p1;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder exon 4316057 4316589 . - . ID=PB.38132.26.p1.exon16;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder CDS 4316479 4316589 . - 0 ID=cds.PB.38132.26.p1;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316057 4316478 . - . ID=PB.38132.26.p1.utr3p1;Parent=PB.38132.26.p1 +contig_corrected_v1_126 transdecoder mRNA 4316067 4320516 . - . ID=PB.38132.28.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320438 4320516 . - . ID=PB.38132.28.p1.utr5p1;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320516 . - . ID=PB.38132.28.p1.exon1;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320437 . - 0 ID=cds.PB.38132.28.p1;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.28.p1.exon2;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder CDS 4320166 4320225 . - 0 ID=cds.PB.38132.28.p1;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320061 . - . ID=PB.38132.28.p1.exon3;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320061 . - 0 ID=cds.PB.38132.28.p1;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.28.p1.exon4;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.28.p1;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.28.p1.exon5;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.28.p1;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.28.p1.exon6;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.28.p1;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.28.p1.exon7;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.28.p1;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.28.p1.exon8;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.28.p1;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.28.p1.exon9;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.28.p1;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.28.p1.exon10;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.28.p1;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.28.p1.exon11;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.28.p1;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.28.p1.exon12;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.28.p1;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder exon 4317476 4317564 . - . ID=PB.38132.28.p1.exon13;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder CDS 4317476 4317564 . - 2 ID=cds.PB.38132.28.p1;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317387 . - . ID=PB.38132.28.p1.exon14;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder CDS 4317361 4317387 . - 0 ID=cds.PB.38132.28.p1;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.28.p1.exon15;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.28.p1.exon16;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.28.p1.exon17;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder exon 4316067 4316589 . - . ID=PB.38132.28.p1.exon18;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317287 4317360 . - . ID=PB.38132.28.p1.utr3p1;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317096 4317158 . - . ID=PB.38132.28.p1.utr3p2;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316977 4317015 . - . ID=PB.38132.28.p1.utr3p3;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316724 4316894 . - . ID=PB.38132.28.p1.utr3p4;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316067 4316589 . - . ID=PB.38132.28.p1.utr3p5;Parent=PB.38132.28.p1 +contig_corrected_v1_126 transdecoder mRNA 4316134 4320549 . - . ID=PB.38132.31.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder exon 4320369 4320549 . - . ID=PB.38132.31.p1.exon1;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320549 . - 0 ID=cds.PB.38132.31.p1;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320225 . - . ID=PB.38132.31.p1.exon2;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320225 . - 2 ID=cds.PB.38132.31.p1;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.31.p1.exon3;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.31.p1;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.31.p1.exon4;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.31.p1;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319088 . - . ID=PB.38132.31.p1.exon5;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319088 . - 0 ID=cds.PB.38132.31.p1;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.31.p1.exon6;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.31.p1;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.31.p1.exon7;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.31.p1;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.31.p1.exon8;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.31.p1;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.31.p1.exon9;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.31.p1;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.31.p1.exon10;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.31.p1;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.31.p1.exon11;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.31.p1;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder exon 4317476 4317564 . - . ID=PB.38132.31.p1.exon12;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder CDS 4317476 4317564 . - 2 ID=cds.PB.38132.31.p1;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317387 . - . ID=PB.38132.31.p1.exon13;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder CDS 4317361 4317387 . - 0 ID=cds.PB.38132.31.p1;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.31.p1.exon14;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.31.p1.exon15;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder exon 4316723 4316894 . - . ID=PB.38132.31.p1.exon16;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder exon 4316134 4316589 . - . ID=PB.38132.31.p1.exon17;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317287 4317360 . - . ID=PB.38132.31.p1.utr3p1;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317096 4317158 . - . ID=PB.38132.31.p1.utr3p2;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316977 4317015 . - . ID=PB.38132.31.p1.utr3p3;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316723 4316894 . - . ID=PB.38132.31.p1.utr3p4;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316134 4316589 . - . ID=PB.38132.31.p1.utr3p5;Parent=PB.38132.31.p1 +contig_corrected_v1_126 transdecoder mRNA 4316134 4320564 . - . ID=PB.38132.32.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder exon 4320369 4320564 . - . ID=PB.38132.32.p1.exon1;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320564 . - 0 ID=cds.PB.38132.32.p1;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320225 . - . ID=PB.38132.32.p1.exon2;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320225 . - 2 ID=cds.PB.38132.32.p1;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.32.p1.exon3;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.32.p1;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.32.p1.exon4;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.32.p1;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.32.p1.exon5;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.32.p1;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.32.p1.exon6;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.32.p1;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.32.p1.exon7;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.32.p1;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.32.p1.exon8;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.32.p1;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.32.p1.exon9;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.32.p1;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.32.p1.exon10;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.32.p1;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.32.p1.exon11;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.32.p1;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.32.p1.exon12;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.32.p1;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.32.p1.exon13;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder CDS 4317287 4317380 . - 1 ID=cds.PB.38132.32.p1;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.32.p1.exon14;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder CDS 4317096 4317158 . - 0 ID=cds.PB.38132.32.p1;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.32.p1.exon15;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder CDS 4316977 4317015 . - 0 ID=cds.PB.38132.32.p1;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder exon 4316134 4316894 . - . ID=PB.38132.32.p1.exon16;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder CDS 4316694 4316894 . - 0 ID=cds.PB.38132.32.p1;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316134 4316693 . - . ID=PB.38132.32.p1.utr3p1;Parent=PB.38132.32.p1 +contig_corrected_v1_126 transdecoder mRNA 4316134 4320520 . - . ID=PB.38132.33.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320438 4320520 . - . ID=PB.38132.33.p1.utr5p1;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320520 . - . ID=PB.38132.33.p1.exon1;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320437 . - 0 ID=cds.PB.38132.33.p1;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.33.p1.exon2;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder CDS 4320166 4320225 . - 0 ID=cds.PB.38132.33.p1;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320079 . - . ID=PB.38132.33.p1.exon3;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320079 . - 0 ID=cds.PB.38132.33.p1;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.33.p1.exon4;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.33.p1;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.33.p1.exon5;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.33.p1;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.33.p1.exon6;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.33.p1;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.33.p1.exon7;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.33.p1;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.33.p1.exon8;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.33.p1;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.33.p1.exon9;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.33.p1;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.33.p1.exon10;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.33.p1;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.33.p1.exon11;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.33.p1;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.33.p1.exon12;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.33.p1;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.33.p1.exon13;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.33.p1;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.33.p1.exon14;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder CDS 4317287 4317380 . - 1 ID=cds.PB.38132.33.p1;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.33.p1.exon15;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder CDS 4317096 4317158 . - 0 ID=cds.PB.38132.33.p1;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.33.p1.exon16;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder CDS 4316977 4317015 . - 0 ID=cds.PB.38132.33.p1;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.33.p1.exon17;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder CDS 4316724 4316894 . - 0 ID=cds.PB.38132.33.p1;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder exon 4316134 4316589 . - . ID=PB.38132.33.p1.exon18;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder CDS 4316479 4316589 . - 0 ID=cds.PB.38132.33.p1;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316134 4316478 . - . ID=PB.38132.33.p1.utr3p1;Parent=PB.38132.33.p1 +contig_corrected_v1_126 transdecoder mRNA 4316134 4320473 . - . ID=PB.38132.34.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320438 4320473 . - . ID=PB.38132.34.p1.utr5p1;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320473 . - . ID=PB.38132.34.p1.exon1;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320437 . - 0 ID=cds.PB.38132.34.p1;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.34.p1.exon2;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder CDS 4320166 4320225 . - 0 ID=cds.PB.38132.34.p1;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320061 . - . ID=PB.38132.34.p1.exon3;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320061 . - 0 ID=cds.PB.38132.34.p1;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.34.p1.exon4;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.34.p1;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.34.p1.exon5;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.34.p1;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.34.p1.exon6;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.34.p1;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.34.p1.exon7;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.34.p1;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.34.p1.exon8;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.34.p1;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.34.p1.exon9;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.34.p1;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.34.p1.exon10;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.34.p1;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317880 . - . ID=PB.38132.34.p1.exon11;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder CDS 4317789 4317880 . - 2 ID=cds.PB.38132.34.p1;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317564 . - . ID=PB.38132.34.p1.exon12;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.34.p1.exon13;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.34.p1.exon14;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.34.p1.exon15;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder exon 4316134 4316589 . - . ID=PB.38132.34.p1.exon16;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317648 4317788 . - . ID=PB.38132.34.p1.utr3p1;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317287 4317564 . - . ID=PB.38132.34.p1.utr3p2;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317096 4317158 . - . ID=PB.38132.34.p1.utr3p3;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316977 4317015 . - . ID=PB.38132.34.p1.utr3p4;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316724 4316894 . - . ID=PB.38132.34.p1.utr3p5;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316134 4316589 . - . ID=PB.38132.34.p1.utr3p6;Parent=PB.38132.34.p1 +contig_corrected_v1_126 transdecoder mRNA 4316134 4478126 . - . ID=PB.38132.36.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4478030 4478126 . - . ID=PB.38132.36.p1.utr5p1;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320438 4320472 . - . ID=PB.38132.36.p1.utr5p2;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder exon 4478030 4478126 . - . ID=PB.38132.36.p1.exon1;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320472 . - . ID=PB.38132.36.p1.exon2;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320437 . - 0 ID=cds.PB.38132.36.p1;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.36.p1.exon3;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder CDS 4320166 4320225 . - 0 ID=cds.PB.38132.36.p1;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320067 . - . ID=PB.38132.36.p1.exon4;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320067 . - 0 ID=cds.PB.38132.36.p1;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.36.p1.exon5;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.36.p1;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.36.p1.exon6;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.36.p1;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.36.p1.exon7;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.36.p1;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.36.p1.exon8;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.36.p1;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.36.p1.exon9;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.36.p1;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.36.p1.exon10;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.36.p1;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.36.p1.exon11;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.36.p1;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.36.p1.exon12;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.36.p1;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.36.p1.exon13;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.36.p1;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.36.p1.exon14;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.36.p1;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.36.p1.exon15;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder CDS 4317287 4317380 . - 1 ID=cds.PB.38132.36.p1;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.36.p1.exon16;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder CDS 4317096 4317158 . - 0 ID=cds.PB.38132.36.p1;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.36.p1.exon17;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder CDS 4316977 4317015 . - 0 ID=cds.PB.38132.36.p1;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.36.p1.exon18;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder CDS 4316724 4316894 . - 0 ID=cds.PB.38132.36.p1;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder exon 4316134 4316589 . - . ID=PB.38132.36.p1.exon19;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder CDS 4316479 4316589 . - 0 ID=cds.PB.38132.36.p1;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316134 4316478 . - . ID=PB.38132.36.p1.utr3p1;Parent=PB.38132.36.p1 +contig_corrected_v1_126 transdecoder mRNA 4316134 4320505 . - . ID=PB.38132.37.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320438 4320505 . - . ID=PB.38132.37.p1.utr5p1;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320505 . - . ID=PB.38132.37.p1.exon1;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320437 . - 0 ID=cds.PB.38132.37.p1;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.37.p1.exon2;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder CDS 4320166 4320225 . - 0 ID=cds.PB.38132.37.p1;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320067 . - . ID=PB.38132.37.p1.exon3;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320067 . - 0 ID=cds.PB.38132.37.p1;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.37.p1.exon4;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.37.p1;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.37.p1.exon5;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.37.p1;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.37.p1.exon6;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.37.p1;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.37.p1.exon7;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.37.p1;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.37.p1.exon8;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.37.p1;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.37.p1.exon9;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.37.p1;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.37.p1.exon10;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.37.p1;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.37.p1.exon11;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.37.p1;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.37.p1.exon12;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.37.p1;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317564 . - . ID=PB.38132.37.p1.exon13;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder CDS 4317392 4317564 . - 2 ID=cds.PB.38132.37.p1;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.37.p1.exon14;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.37.p1.exon15;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.37.p1.exon16;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder exon 4316134 4316589 . - . ID=PB.38132.37.p1.exon17;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317287 4317391 . - . ID=PB.38132.37.p1.utr3p1;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317096 4317158 . - . ID=PB.38132.37.p1.utr3p2;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316977 4317015 . - . ID=PB.38132.37.p1.utr3p3;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316724 4316894 . - . ID=PB.38132.37.p1.utr3p4;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316134 4316589 . - . ID=PB.38132.37.p1.utr3p5;Parent=PB.38132.37.p1 +contig_corrected_v1_126 transdecoder mRNA 4316134 4478126 . - . ID=PB.38132.38.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4478030 4478126 . - . ID=PB.38132.38.p1.utr5p1;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320438 4320472 . - . ID=PB.38132.38.p1.utr5p2;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder exon 4478030 4478126 . - . ID=PB.38132.38.p1.exon1;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320472 . - . ID=PB.38132.38.p1.exon2;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320437 . - 0 ID=cds.PB.38132.38.p1;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.38.p1.exon3;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder CDS 4320166 4320225 . - 0 ID=cds.PB.38132.38.p1;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320061 . - . ID=PB.38132.38.p1.exon4;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320061 . - 0 ID=cds.PB.38132.38.p1;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.38.p1.exon5;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.38.p1;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.38.p1.exon6;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.38.p1;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.38.p1.exon7;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.38.p1;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.38.p1.exon8;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.38.p1;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.38.p1.exon9;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.38.p1;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.38.p1.exon10;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.38.p1;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.38.p1.exon11;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.38.p1;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.38.p1.exon12;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.38.p1;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.38.p1.exon13;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.38.p1;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.38.p1.exon14;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.38.p1;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.38.p1.exon15;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder CDS 4317287 4317380 . - 1 ID=cds.PB.38132.38.p1;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.38.p1.exon16;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder CDS 4317096 4317158 . - 0 ID=cds.PB.38132.38.p1;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.38.p1.exon17;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder CDS 4316977 4317015 . - 0 ID=cds.PB.38132.38.p1;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.38.p1.exon18;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder CDS 4316724 4316894 . - 0 ID=cds.PB.38132.38.p1;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder exon 4316134 4316589 . - . ID=PB.38132.38.p1.exon19;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder CDS 4316479 4316589 . - 0 ID=cds.PB.38132.38.p1;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316134 4316478 . - . ID=PB.38132.38.p1.utr3p1;Parent=PB.38132.38.p1 +contig_corrected_v1_126 transdecoder mRNA 4316134 4478126 . - . ID=PB.38132.39.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4478030 4478126 . - . ID=PB.38132.39.p1.utr5p1;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320438 4320472 . - . ID=PB.38132.39.p1.utr5p2;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder exon 4478030 4478126 . - . ID=PB.38132.39.p1.exon1;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320472 . - . ID=PB.38132.39.p1.exon2;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320437 . - 0 ID=cds.PB.38132.39.p1;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.39.p1.exon3;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder CDS 4320166 4320225 . - 0 ID=cds.PB.38132.39.p1;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320043 . - . ID=PB.38132.39.p1.exon4;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320043 . - 0 ID=cds.PB.38132.39.p1;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.39.p1.exon5;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.39.p1;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.39.p1.exon6;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.39.p1;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.39.p1.exon7;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.39.p1;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.39.p1.exon8;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.39.p1;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.39.p1.exon9;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.39.p1;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.39.p1.exon10;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.39.p1;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.39.p1.exon11;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.39.p1;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.39.p1.exon12;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.39.p1;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.39.p1.exon13;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.39.p1;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.39.p1.exon14;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.39.p1;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.39.p1.exon15;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder CDS 4317287 4317380 . - 1 ID=cds.PB.38132.39.p1;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.39.p1.exon16;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder CDS 4317096 4317158 . - 0 ID=cds.PB.38132.39.p1;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.39.p1.exon17;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder CDS 4316977 4317015 . - 0 ID=cds.PB.38132.39.p1;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.39.p1.exon18;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder CDS 4316724 4316894 . - 0 ID=cds.PB.38132.39.p1;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder exon 4316134 4316589 . - . ID=PB.38132.39.p1.exon19;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder CDS 4316479 4316589 . - 0 ID=cds.PB.38132.39.p1;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316134 4316478 . - . ID=PB.38132.39.p1.utr3p1;Parent=PB.38132.39.p1 +contig_corrected_v1_126 transdecoder mRNA 4316155 4320577 . - . ID=PB.38132.42.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder exon 4320369 4320577 . - . ID=PB.38132.42.p1.exon1;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320576 . - 0 ID=cds.PB.38132.42.p1;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320225 . - . ID=PB.38132.42.p1.exon2;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320225 . - 2 ID=cds.PB.38132.42.p1;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.42.p1.exon3;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.42.p1;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.42.p1.exon4;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.42.p1;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.42.p1.exon5;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.42.p1;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.42.p1.exon6;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.42.p1;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.42.p1.exon7;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.42.p1;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.42.p1.exon8;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.42.p1;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.42.p1.exon9;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.42.p1;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.42.p1.exon10;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.42.p1;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.42.p1.exon11;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.42.p1;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.42.p1.exon12;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.42.p1;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.42.p1.exon13;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder CDS 4317287 4317380 . - 1 ID=cds.PB.38132.42.p1;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.42.p1.exon14;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder CDS 4317096 4317158 . - 0 ID=cds.PB.38132.42.p1;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.42.p1.exon15;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder CDS 4316977 4317015 . - 0 ID=cds.PB.38132.42.p1;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.42.p1.exon16;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder CDS 4316724 4316894 . - 0 ID=cds.PB.38132.42.p1;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder exon 4316155 4316589 . - . ID=PB.38132.42.p1.exon17;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder CDS 4316479 4316589 . - 0 ID=cds.PB.38132.42.p1;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316155 4316478 . - . ID=PB.38132.42.p1.utr3p1;Parent=PB.38132.42.p1 +contig_corrected_v1_126 transdecoder mRNA 4316191 4478030 . - . ID=PB.38132.47.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4477932 4478030 . - . ID=PB.38132.47.p1.utr5p1;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320166 4320225 . - . ID=PB.38132.47.p1.utr5p2;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319986 4320067 . - . ID=PB.38132.47.p1.utr5p3;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319647 4319709 . - . ID=PB.38132.47.p1.utr5p4;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319148 4319182 . - . ID=PB.38132.47.p1.utr5p5;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319009 4319085 . - . ID=PB.38132.47.p1.utr5p6;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4318592 4318637 . - . ID=PB.38132.47.p1.utr5p7;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4318443 4318505 . - . ID=PB.38132.47.p1.utr5p8;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4318118 4318188 . - . ID=PB.38132.47.p1.utr5p9;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4317971 4318039 . - . ID=PB.38132.47.p1.utr5p10;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4317876 4317880 . - . ID=PB.38132.47.p1.utr5p11;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder exon 4477932 4478030 . - . ID=PB.38132.47.p1.exon1;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.47.p1.exon2;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320067 . - . ID=PB.38132.47.p1.exon3;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.47.p1.exon4;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.47.p1.exon5;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.47.p1.exon6;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.47.p1.exon7;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.47.p1.exon8;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder exon 4318118 4318188 . - . ID=PB.38132.47.p1.exon9;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.47.p1.exon10;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.47.p1.exon11;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317875 . - 0 ID=cds.PB.38132.47.p1;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.47.p1.exon12;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.47.p1;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.47.p1.exon13;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.47.p1;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.47.p1.exon14;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder CDS 4317287 4317380 . - 1 ID=cds.PB.38132.47.p1;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.47.p1.exon15;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder CDS 4317096 4317158 . - 0 ID=cds.PB.38132.47.p1;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.47.p1.exon16;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder CDS 4316977 4317015 . - 0 ID=cds.PB.38132.47.p1;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.47.p1.exon17;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder CDS 4316724 4316894 . - 0 ID=cds.PB.38132.47.p1;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder exon 4316191 4316589 . - . ID=PB.38132.47.p1.exon18;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder CDS 4316479 4316589 . - 0 ID=cds.PB.38132.47.p1;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316191 4316478 . - . ID=PB.38132.47.p1.utr3p1;Parent=PB.38132.47.p1 +contig_corrected_v1_126 transdecoder mRNA 4316194 4320493 . - . ID=PB.38132.48.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320438 4320493 . - . ID=PB.38132.48.p1.utr5p1;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320493 . - . ID=PB.38132.48.p1.exon1;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320437 . - 0 ID=cds.PB.38132.48.p1;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.48.p1.exon2;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder CDS 4320166 4320225 . - 0 ID=cds.PB.38132.48.p1;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320061 . - . ID=PB.38132.48.p1.exon3;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320061 . - 0 ID=cds.PB.38132.48.p1;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.48.p1.exon4;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.48.p1;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.48.p1.exon5;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.48.p1;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.48.p1.exon6;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.48.p1;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.48.p1.exon7;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.48.p1;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.48.p1.exon8;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.48.p1;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.48.p1.exon9;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.48.p1;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.48.p1.exon10;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.48.p1;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.48.p1.exon11;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.48.p1;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.48.p1.exon12;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.48.p1;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317564 . - . ID=PB.38132.48.p1.exon13;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder CDS 4317392 4317564 . - 2 ID=cds.PB.38132.48.p1;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.48.p1.exon14;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.48.p1.exon15;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.48.p1.exon16;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder exon 4316194 4316589 . - . ID=PB.38132.48.p1.exon17;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317287 4317391 . - . ID=PB.38132.48.p1.utr3p1;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317096 4317158 . - . ID=PB.38132.48.p1.utr3p2;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316977 4317015 . - . ID=PB.38132.48.p1.utr3p3;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316724 4316894 . - . ID=PB.38132.48.p1.utr3p4;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316194 4316589 . - . ID=PB.38132.48.p1.utr3p5;Parent=PB.38132.48.p1 +contig_corrected_v1_126 transdecoder mRNA 4315993 4478126 . - . ID=PB.38132.5.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4478030 4478126 . - . ID=PB.38132.5.p1.utr5p1;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320438 4320472 . - . ID=PB.38132.5.p1.utr5p2;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder exon 4478030 4478126 . - . ID=PB.38132.5.p1.exon1;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320472 . - . ID=PB.38132.5.p1.exon2;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320437 . - 0 ID=cds.PB.38132.5.p1;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.5.p1.exon3;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder CDS 4320166 4320225 . - 0 ID=cds.PB.38132.5.p1;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320061 . - . ID=PB.38132.5.p1.exon4;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320061 . - 0 ID=cds.PB.38132.5.p1;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.5.p1.exon5;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.5.p1;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.5.p1.exon6;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.5.p1;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.5.p1.exon7;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.5.p1;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.5.p1.exon8;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.5.p1;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.5.p1.exon9;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.5.p1;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.5.p1.exon10;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.5.p1;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.5.p1.exon11;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.5.p1;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.5.p1.exon12;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.5.p1;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.5.p1.exon13;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.5.p1;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.5.p1.exon14;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.5.p1;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.5.p1.exon15;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder CDS 4317287 4317380 . - 1 ID=cds.PB.38132.5.p1;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.5.p1.exon16;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder CDS 4317096 4317158 . - 0 ID=cds.PB.38132.5.p1;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.5.p1.exon17;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder CDS 4316977 4317015 . - 0 ID=cds.PB.38132.5.p1;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.5.p1.exon18;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder CDS 4316724 4316894 . - 0 ID=cds.PB.38132.5.p1;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder exon 4315993 4316589 . - . ID=PB.38132.5.p1.exon19;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder CDS 4316479 4316589 . - 0 ID=cds.PB.38132.5.p1;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4315993 4316478 . - . ID=PB.38132.5.p1.utr3p1;Parent=PB.38132.5.p1 +contig_corrected_v1_126 transdecoder mRNA 4316311 4320520 . - . ID=PB.38132.50.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320438 4320520 . - . ID=PB.38132.50.p1.utr5p1;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320520 . - . ID=PB.38132.50.p1.exon1;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320437 . - 0 ID=cds.PB.38132.50.p1;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.50.p1.exon2;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder CDS 4320166 4320225 . - 0 ID=cds.PB.38132.50.p1;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320079 . - . ID=PB.38132.50.p1.exon3;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320079 . - 0 ID=cds.PB.38132.50.p1;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.50.p1.exon4;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.50.p1;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.50.p1.exon5;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.50.p1;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.50.p1.exon6;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.50.p1;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.50.p1.exon7;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.50.p1;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.50.p1.exon8;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.50.p1;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.50.p1.exon9;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.50.p1;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.50.p1.exon10;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.50.p1;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.50.p1.exon11;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.50.p1;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.50.p1.exon12;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.50.p1;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.50.p1.exon13;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.50.p1;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.50.p1.exon14;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder CDS 4317287 4317380 . - 1 ID=cds.PB.38132.50.p1;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.50.p1.exon15;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder CDS 4317096 4317158 . - 0 ID=cds.PB.38132.50.p1;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.50.p1.exon16;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder CDS 4316977 4317015 . - 0 ID=cds.PB.38132.50.p1;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.50.p1.exon17;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder CDS 4316724 4316894 . - 0 ID=cds.PB.38132.50.p1;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder exon 4316311 4316589 . - . ID=PB.38132.50.p1.exon18;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder CDS 4316479 4316589 . - 0 ID=cds.PB.38132.50.p1;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316311 4316478 . - . ID=PB.38132.50.p1.utr3p1;Parent=PB.38132.50.p1 +contig_corrected_v1_126 transdecoder mRNA 4316348 4320651 . - . ID=PB.38132.53.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320607 4320651 . - . ID=PB.38132.53.p1.utr5p1;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320438 4320533 . - . ID=PB.38132.53.p1.utr5p2;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder exon 4320607 4320651 . - . ID=PB.38132.53.p1.exon1;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320533 . - . ID=PB.38132.53.p1.exon2;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320437 . - 0 ID=cds.PB.38132.53.p1;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.53.p1.exon3;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder CDS 4320166 4320225 . - 0 ID=cds.PB.38132.53.p1;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320061 . - . ID=PB.38132.53.p1.exon4;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320061 . - 0 ID=cds.PB.38132.53.p1;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.53.p1.exon5;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.53.p1;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.53.p1.exon6;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.53.p1;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.53.p1.exon7;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.53.p1;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.53.p1.exon8;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.53.p1;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.53.p1.exon9;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.53.p1;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.53.p1.exon10;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.53.p1;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.53.p1.exon11;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.53.p1;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.53.p1.exon12;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.53.p1;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.53.p1.exon13;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.53.p1;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.53.p1.exon14;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.53.p1;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.53.p1.exon15;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder CDS 4317287 4317380 . - 1 ID=cds.PB.38132.53.p1;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.53.p1.exon16;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder CDS 4317096 4317158 . - 0 ID=cds.PB.38132.53.p1;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.53.p1.exon17;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder CDS 4316977 4317015 . - 0 ID=cds.PB.38132.53.p1;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.53.p1.exon18;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder CDS 4316724 4316894 . - 0 ID=cds.PB.38132.53.p1;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder exon 4316348 4316589 . - . ID=PB.38132.53.p1.exon19;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder CDS 4316479 4316589 . - 0 ID=cds.PB.38132.53.p1;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316348 4316478 . - . ID=PB.38132.53.p1.utr3p1;Parent=PB.38132.53.p1 +contig_corrected_v1_126 transdecoder mRNA 4316348 4478126 . - . ID=PB.38132.54.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4478001 4478126 . - . ID=PB.38132.54.p1.utr5p1;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder exon 4477932 4478126 . - . ID=PB.38132.54.p1.exon1;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder CDS 4477932 4478000 . - 0 ID=cds.PB.38132.54.p1;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.54.p1.exon2;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder CDS 4320166 4320225 . - 0 ID=cds.PB.38132.54.p1;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320067 . - . ID=PB.38132.54.p1.exon3;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320067 . - 0 ID=cds.PB.38132.54.p1;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.54.p1.exon4;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.54.p1;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.54.p1.exon5;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.54.p1;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.54.p1.exon6;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.54.p1;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.54.p1.exon7;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.54.p1;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.54.p1.exon8;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.54.p1;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.54.p1.exon9;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.54.p1;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.54.p1.exon10;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.54.p1;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.54.p1.exon11;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.54.p1;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.54.p1.exon12;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.54.p1;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.54.p1.exon13;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.54.p1;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.54.p1.exon14;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder CDS 4317287 4317380 . - 1 ID=cds.PB.38132.54.p1;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.54.p1.exon15;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder CDS 4317096 4317158 . - 0 ID=cds.PB.38132.54.p1;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.54.p1.exon16;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder CDS 4316977 4317015 . - 0 ID=cds.PB.38132.54.p1;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.54.p1.exon17;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder CDS 4316724 4316894 . - 0 ID=cds.PB.38132.54.p1;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder exon 4316348 4316589 . - . ID=PB.38132.54.p1.exon18;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder CDS 4316479 4316589 . - 0 ID=cds.PB.38132.54.p1;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316348 4316478 . - . ID=PB.38132.54.p1.utr3p1;Parent=PB.38132.54.p1 +contig_corrected_v1_126 transdecoder mRNA 4316352 4478126 . - . ID=PB.38132.55.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4478030 4478126 . - . ID=PB.38132.55.p1.utr5p1;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320438 4320472 . - . ID=PB.38132.55.p1.utr5p2;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder exon 4478030 4478126 . - . ID=PB.38132.55.p1.exon1;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320472 . - . ID=PB.38132.55.p1.exon2;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320437 . - 0 ID=cds.PB.38132.55.p1;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.55.p1.exon3;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder CDS 4320166 4320225 . - 0 ID=cds.PB.38132.55.p1;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320061 . - . ID=PB.38132.55.p1.exon4;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320061 . - 0 ID=cds.PB.38132.55.p1;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.55.p1.exon5;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.55.p1;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.55.p1.exon6;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.55.p1;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.55.p1.exon7;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.55.p1;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.55.p1.exon8;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.55.p1;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.55.p1.exon9;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.55.p1;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.55.p1.exon10;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.55.p1;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.55.p1.exon11;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.55.p1;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.55.p1.exon12;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.55.p1;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder exon 4317644 4317709 . - . ID=PB.38132.55.p1.exon13;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder CDS 4317644 4317709 . - 1 ID=cds.PB.38132.55.p1;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.55.p1.exon14;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder CDS 4317564 4317564 . - 1 ID=cds.PB.38132.55.p1;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.55.p1.exon15;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.55.p1.exon16;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.55.p1.exon17;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.55.p1.exon18;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder exon 4316352 4316589 . - . ID=PB.38132.55.p1.exon19;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317474 4317563 . - . ID=PB.38132.55.p1.utr3p1;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317287 4317380 . - . ID=PB.38132.55.p1.utr3p2;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317096 4317158 . - . ID=PB.38132.55.p1.utr3p3;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316977 4317015 . - . ID=PB.38132.55.p1.utr3p4;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316724 4316894 . - . ID=PB.38132.55.p1.utr3p5;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316352 4316589 . - . ID=PB.38132.55.p1.utr3p6;Parent=PB.38132.55.p1 +contig_corrected_v1_126 transdecoder mRNA 4316352 4320516 . - . ID=PB.38132.56.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder exon 4320369 4320516 . - . ID=PB.38132.56.p1.exon1;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320516 . - 0 ID=cds.PB.38132.56.p1;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320225 . - . ID=PB.38132.56.p1.exon2;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320225 . - 2 ID=cds.PB.38132.56.p1;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.56.p1.exon3;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.56.p1;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.56.p1.exon4;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.56.p1;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.56.p1.exon5;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.56.p1;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.56.p1.exon6;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.56.p1;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.56.p1.exon7;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.56.p1;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.56.p1.exon8;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.56.p1;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.56.p1.exon9;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.56.p1;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.56.p1.exon10;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.56.p1;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.56.p1.exon11;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.56.p1;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.56.p1.exon12;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.56.p1;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.56.p1.exon13;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder CDS 4317287 4317380 . - 1 ID=cds.PB.38132.56.p1;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.56.p1.exon14;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder CDS 4317096 4317158 . - 0 ID=cds.PB.38132.56.p1;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.56.p1.exon15;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder CDS 4316977 4317015 . - 0 ID=cds.PB.38132.56.p1;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.56.p1.exon16;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder CDS 4316724 4316894 . - 0 ID=cds.PB.38132.56.p1;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder exon 4316352 4316589 . - . ID=PB.38132.56.p1.exon17;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder CDS 4316479 4316589 . - 0 ID=cds.PB.38132.56.p1;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316352 4316478 . - . ID=PB.38132.56.p1.utr3p1;Parent=PB.38132.56.p1 +contig_corrected_v1_126 transdecoder mRNA 4315996 4320538 . - . ID=PB.38132.6.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320369 4320538 . - . ID=PB.38132.6.p1.utr5p1;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319986 4320225 . - . ID=PB.38132.6.p1.utr5p2;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319647 4319709 . - . ID=PB.38132.6.p1.utr5p3;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319062 4319182 . - . ID=PB.38132.6.p1.utr5p4;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320538 . - . ID=PB.38132.6.p1.exon1;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320225 . - . ID=PB.38132.6.p1.exon2;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.6.p1.exon3;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319182 . - . ID=PB.38132.6.p1.exon4;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319061 . - 0 ID=cds.PB.38132.6.p1;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.6.p1.exon5;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.6.p1;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.6.p1.exon6;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.6.p1;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.6.p1.exon7;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.6.p1;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.6.p1.exon8;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.6.p1;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.6.p1.exon9;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.6.p1;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.6.p1.exon10;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.6.p1;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.6.p1.exon11;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.6.p1;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.6.p1.exon12;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder CDS 4317287 4317380 . - 1 ID=cds.PB.38132.6.p1;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.6.p1.exon13;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder CDS 4317096 4317158 . - 0 ID=cds.PB.38132.6.p1;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.6.p1.exon14;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder CDS 4316977 4317015 . - 0 ID=cds.PB.38132.6.p1;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.6.p1.exon15;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder CDS 4316724 4316894 . - 0 ID=cds.PB.38132.6.p1;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder exon 4315996 4316589 . - . ID=PB.38132.6.p1.exon16;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder CDS 4316479 4316589 . - 0 ID=cds.PB.38132.6.p1;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4315996 4316478 . - . ID=PB.38132.6.p1.utr3p1;Parent=PB.38132.6.p1 +contig_corrected_v1_126 transdecoder mRNA 4316359 4320473 . - . ID=PB.38132.60.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320438 4320473 . - . ID=PB.38132.60.p1.utr5p1;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320473 . - . ID=PB.38132.60.p1.exon1;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320437 . - 0 ID=cds.PB.38132.60.p1;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.60.p1.exon2;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder CDS 4320166 4320225 . - 0 ID=cds.PB.38132.60.p1;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320067 . - . ID=PB.38132.60.p1.exon3;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320067 . - 0 ID=cds.PB.38132.60.p1;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.60.p1.exon4;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.60.p1;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.60.p1.exon5;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.60.p1;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.60.p1.exon6;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.60.p1;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.60.p1.exon7;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.60.p1;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.60.p1.exon8;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.60.p1;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.60.p1.exon9;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.60.p1;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.60.p1.exon10;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.60.p1;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.60.p1.exon11;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.60.p1;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.60.p1.exon12;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.60.p1;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.60.p1.exon13;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.60.p1;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.60.p1.exon14;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder CDS 4317287 4317380 . - 1 ID=cds.PB.38132.60.p1;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.60.p1.exon15;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder CDS 4317096 4317158 . - 0 ID=cds.PB.38132.60.p1;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.60.p1.exon16;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder CDS 4316977 4317015 . - 0 ID=cds.PB.38132.60.p1;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.60.p1.exon17;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder CDS 4316724 4316894 . - 0 ID=cds.PB.38132.60.p1;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder exon 4316359 4316563 . - . ID=PB.38132.60.p1.exon18;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder CDS 4316474 4316563 . - 0 ID=cds.PB.38132.60.p1;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316359 4316473 . - . ID=PB.38132.60.p1.utr3p1;Parent=PB.38132.60.p1 +contig_corrected_v1_126 transdecoder mRNA 4316359 4320473 . - . ID=PB.38132.62.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320438 4320473 . - . ID=PB.38132.62.p1.utr5p1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320473 . - . ID=PB.38132.62.p1.exon1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320437 . - 0 ID=cds.PB.38132.62.p1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.62.p1.exon2;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder CDS 4320166 4320225 . - 0 ID=cds.PB.38132.62.p1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320061 . - . ID=PB.38132.62.p1.exon3;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320061 . - 0 ID=cds.PB.38132.62.p1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder exon 4319788 4319856 . - . ID=PB.38132.62.p1.exon4;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder CDS 4319788 4319856 . - 2 ID=cds.PB.38132.62.p1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.62.p1.exon5;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.62.p1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.62.p1.exon6;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.62.p1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.62.p1.exon7;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.62.p1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.62.p1.exon8;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.62.p1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.62.p1.exon9;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.62.p1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.62.p1.exon10;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.62.p1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.62.p1.exon11;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.62.p1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.62.p1.exon12;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.62.p1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.62.p1.exon13;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.62.p1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.62.p1.exon14;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.62.p1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.62.p1.exon15;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder CDS 4317287 4317380 . - 1 ID=cds.PB.38132.62.p1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.62.p1.exon16;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder CDS 4317096 4317158 . - 0 ID=cds.PB.38132.62.p1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.62.p1.exon17;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder CDS 4316977 4317015 . - 0 ID=cds.PB.38132.62.p1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.62.p1.exon18;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder CDS 4316724 4316894 . - 0 ID=cds.PB.38132.62.p1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder exon 4316359 4316589 . - . ID=PB.38132.62.p1.exon19;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder CDS 4316479 4316589 . - 0 ID=cds.PB.38132.62.p1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316359 4316478 . - . ID=PB.38132.62.p1.utr3p1;Parent=PB.38132.62.p1 +contig_corrected_v1_126 transdecoder mRNA 4316373 4320496 . - . ID=PB.38132.64.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320369 4320496 . - . ID=PB.38132.64.p1.utr5p1;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319986 4320225 . - . ID=PB.38132.64.p1.utr5p2;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319647 4319709 . - . ID=PB.38132.64.p1.utr5p3;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319148 4319182 . - . ID=PB.38132.64.p1.utr5p4;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4319009 4319085 . - . ID=PB.38132.64.p1.utr5p5;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4318592 4318637 . - . ID=PB.38132.64.p1.utr5p6;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder five_prime_UTR 4318059 4318505 . - . ID=PB.38132.64.p1.utr5p7;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320496 . - . ID=PB.38132.64.p1.exon1;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320225 . - . ID=PB.38132.64.p1.exon2;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.64.p1.exon3;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.64.p1.exon4;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.64.p1.exon5;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.64.p1.exon6;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318505 . - . ID=PB.38132.64.p1.exon7;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318058 . - 0 ID=cds.PB.38132.64.p1;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.64.p1.exon8;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.64.p1;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.64.p1.exon9;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.64.p1;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder exon 4317474 4317564 . - . ID=PB.38132.64.p1.exon10;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder CDS 4317474 4317564 . - 2 ID=cds.PB.38132.64.p1;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317380 . - . ID=PB.38132.64.p1.exon11;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder CDS 4317287 4317380 . - 1 ID=cds.PB.38132.64.p1;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.64.p1.exon12;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder CDS 4317096 4317158 . - 0 ID=cds.PB.38132.64.p1;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.64.p1.exon13;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder CDS 4316977 4317015 . - 0 ID=cds.PB.38132.64.p1;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.64.p1.exon14;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder CDS 4316724 4316894 . - 0 ID=cds.PB.38132.64.p1;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder exon 4316373 4316589 . - . ID=PB.38132.64.p1.exon15;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder CDS 4316479 4316589 . - 0 ID=cds.PB.38132.64.p1;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316373 4316478 . - . ID=PB.38132.64.p1.utr3p1;Parent=PB.38132.64.p1 +contig_corrected_v1_126 transdecoder mRNA 4316377 4320496 . - . ID=PB.38132.65.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320438 4320496 . - . ID=PB.38132.65.p1.utr5p1;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320496 . - . ID=PB.38132.65.p1.exon1;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320437 . - 0 ID=cds.PB.38132.65.p1;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.65.p1.exon2;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder CDS 4320166 4320225 . - 0 ID=cds.PB.38132.65.p1;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320061 . - . ID=PB.38132.65.p1.exon3;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320061 . - 0 ID=cds.PB.38132.65.p1;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.65.p1.exon4;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.65.p1;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.65.p1.exon5;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.65.p1;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.65.p1.exon6;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.65.p1;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.65.p1.exon7;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.65.p1;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.65.p1.exon8;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.65.p1;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.65.p1.exon9;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.65.p1;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.65.p1.exon10;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.65.p1;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.65.p1.exon11;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.65.p1;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.65.p1.exon12;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.65.p1;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder exon 4317287 4317564 . - . ID=PB.38132.65.p1.exon13;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder CDS 4317392 4317564 . - 2 ID=cds.PB.38132.65.p1;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder exon 4317096 4317158 . - . ID=PB.38132.65.p1.exon14;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder exon 4316977 4317015 . - . ID=PB.38132.65.p1.exon15;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder exon 4316724 4316894 . - . ID=PB.38132.65.p1.exon16;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder exon 4316377 4316589 . - . ID=PB.38132.65.p1.exon17;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317287 4317391 . - . ID=PB.38132.65.p1.utr3p1;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317096 4317158 . - . ID=PB.38132.65.p1.utr3p2;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316977 4317015 . - . ID=PB.38132.65.p1.utr3p3;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316724 4316894 . - . ID=PB.38132.65.p1.utr3p4;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4316377 4316589 . - . ID=PB.38132.65.p1.utr3p5;Parent=PB.38132.65.p1 +contig_corrected_v1_126 transdecoder mRNA 4317248 4320486 . - . ID=PB.38132.67.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder five_prime_UTR 4320438 4320486 . - . ID=PB.38132.67.p1.utr5p1;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder exon 4320369 4320486 . - . ID=PB.38132.67.p1.exon1;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder CDS 4320369 4320437 . - 0 ID=cds.PB.38132.67.p1;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder exon 4320166 4320225 . - . ID=PB.38132.67.p1.exon2;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder CDS 4320166 4320225 . - 0 ID=cds.PB.38132.67.p1;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder exon 4319986 4320061 . - . ID=PB.38132.67.p1.exon3;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder CDS 4319986 4320061 . - 0 ID=cds.PB.38132.67.p1;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder exon 4319647 4319709 . - . ID=PB.38132.67.p1.exon4;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder CDS 4319647 4319709 . - 2 ID=cds.PB.38132.67.p1;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder exon 4319148 4319182 . - . ID=PB.38132.67.p1.exon5;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder CDS 4319148 4319182 . - 2 ID=cds.PB.38132.67.p1;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder exon 4319009 4319085 . - . ID=PB.38132.67.p1.exon6;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder CDS 4319009 4319085 . - 0 ID=cds.PB.38132.67.p1;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder exon 4318592 4318637 . - . ID=PB.38132.67.p1.exon7;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder CDS 4318592 4318637 . - 1 ID=cds.PB.38132.67.p1;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder exon 4318443 4318505 . - . ID=PB.38132.67.p1.exon8;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder CDS 4318443 4318505 . - 0 ID=cds.PB.38132.67.p1;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder exon 4318122 4318188 . - . ID=PB.38132.67.p1.exon9;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder CDS 4318122 4318188 . - 0 ID=cds.PB.38132.67.p1;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder exon 4317971 4318039 . - . ID=PB.38132.67.p1.exon10;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder CDS 4317971 4318039 . - 2 ID=cds.PB.38132.67.p1;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder exon 4317811 4317880 . - . ID=PB.38132.67.p1.exon11;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder CDS 4317811 4317880 . - 2 ID=cds.PB.38132.67.p1;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder exon 4317648 4317709 . - . ID=PB.38132.67.p1.exon12;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder CDS 4317648 4317709 . - 1 ID=cds.PB.38132.67.p1;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder exon 4317248 4317564 . - . ID=PB.38132.67.p1.exon13;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder CDS 4317392 4317564 . - 2 ID=cds.PB.38132.67.p1;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder three_prime_UTR 4317248 4317391 . - . ID=PB.38132.67.p1.utr3p1;Parent=PB.38132.67.p1 +contig_corrected_v1_126 transdecoder mRNA 4324160 4324636 . - . ID=PB.38132.68.p1;Parent=PB.38132^contig_corrected_v1_126^-;Name=ORF%20type%3A5prime_partial%20len%3A356%20%28%2B%29%2Cscore%3D63.08%2CUniRef90_A0A453Q8P9%7C95.9%7C1.71e-179%2CGNT-I%7CPF03071.18%7C1.5e-97%2CGlyco_tranf_2_3%7CPF13641.9%7C4e%2B03%2CGlyco_tranf_2_3%7CPF13641.9%7C9.8e-05%2CMGAT2%7CPF05060.17%7C0.2%2CMGAT2%7CPF05060.17%7C0.87%2CGlycos_transf_2%7CPF00535.29%7C0.011%2CNAM-associated%7CPF14303.9%7C0.032%2CGlyco_transf_25%7CPF01755.20%7C0.1%2CRNase_HII%7CPF01351.21%7C0.19%2CRRM_3%7CPF08777.14%7C0.36%2CHAP1_N%7CPF04849.16%7C0.66 +contig_corrected_v1_126 transdecoder exon 4324160 4324636 . - . ID=PB.38132.68.p1.exon1;Parent=PB.38132.68.p1 +contig_corrected_v1_126 transdecoder CDS 4324161 4324634 . - 0 ID=cds.PB.38132.68.p1;Parent=PB.38132.68.p1 diff --git a/src/agat/agat_sp_compare_two_annotations/test_data/script.sh b/src/agat/agat_sp_compare_two_annotations/test_data/script.sh index 84b85758..e14e4aaa 100755 --- a/src/agat/agat_sp_compare_two_annotations/test_data/script.sh +++ b/src/agat/agat_sp_compare_two_annotations/test_data/script.sh @@ -7,4 +7,8 @@ fi # copy test data cp -r /tmp/agat_source/t/scripts_output/in/1.gff src/agat/agat_sp_compare_two_annotations/test_data -cp -r /tmp/agat_source/t/scripts_output/out/agat_sp_compare_two_annotations_1.txt src/agat/agat_sp_compare_two_annotations/test_data \ No newline at end of file +cp -r /tmp/agat_source/t/scripts_output/in/agat_sp_compare_two_annotations/file1.gff src/agat/agat_sp_compare_two_annotations/test_data +cp -r /tmp/agat_source/t/scripts_output/in/agat_sp_compare_two_annotations/file2.gff src/agat/agat_sp_compare_two_annotations/test_data +cp -r /tmp/agat_source/t/scripts_output/out/agat_sp_compare_two_annotations_1.txt src/agat/agat_sp_compare_two_annotations/test_data +cp -r /tmp/agat_source/t/scripts_output/out/agat_sp_compare_two_annotations_2.txt src/agat/agat_sp_compare_two_annotations/test_data +cp -r /tmp/agat_source/t/scripts_output/out/agat_sp_compare_two_annotations_3.txt src/agat/agat_sp_compare_two_annotations/test_data \ No newline at end of file From 5e62c7545c005607375d51304258b6bc11fc4420 Mon Sep 17 00:00:00 2001 From: Leila011 Date: Wed, 7 Aug 2024 14:05:38 +0200 Subject: [PATCH 11/15] DEBUG: check if output_dir is set if not stop --- src/agat/agat_sp_compare_two_annotations/script.sh | 11 ++++++++++- 1 file changed, 10 insertions(+), 1 deletion(-) diff --git a/src/agat/agat_sp_compare_two_annotations/script.sh b/src/agat/agat_sp_compare_two_annotations/script.sh index 8c6d09a4..31f7f33d 100644 --- a/src/agat/agat_sp_compare_two_annotations/script.sh +++ b/src/agat/agat_sp_compare_two_annotations/script.sh @@ -7,11 +7,20 @@ [[ "$par_debug" == "false" ]] && unset par_debug [[ "$par_verbose" == "false" ]] && unset par_verbose +# Debug statement to check if par_output_dir is set +echo "par_output_dir is set to: ${par_output_dir}" + +# Ensure par_output_dir is set +if [ -z "$par_output_dir" ]; then + echo "Error: par_output_dir is not set." + exit 1 +fi + # run agat_sp_compare_two_annotations.pl agat_sp_compare_two_annotations.pl \ -gff1 "$par_gff1" \ -gff2 "$par_gff2" \ - -output "$par_output" \ + ${par_output_dir:+-o "${par_output_dir}"} \ ${par_debug:+--debug} \ ${par_verbose:+--verbose} \ ${par_config:+--config "${par_config}"} From ca67df9246b4c567f18817e4ef8d2c519193622c Mon Sep 17 00:00:00 2001 From: Leila011 Date: Mon, 19 Aug 2024 16:55:07 +0200 Subject: [PATCH 12/15] add set -eo pipefail to test and script files --- src/agat/agat_sp_compare_two_annotations/script.sh | 2 ++ src/agat/agat_sp_compare_two_annotations/test.sh | 2 ++ 2 files changed, 4 insertions(+) diff --git a/src/agat/agat_sp_compare_two_annotations/script.sh b/src/agat/agat_sp_compare_two_annotations/script.sh index 31f7f33d..fc0aec89 100644 --- a/src/agat/agat_sp_compare_two_annotations/script.sh +++ b/src/agat/agat_sp_compare_two_annotations/script.sh @@ -1,5 +1,7 @@ #!/bin/bash +set -eo pipefail + ## VIASH START ## VIASH END diff --git a/src/agat/agat_sp_compare_two_annotations/test.sh b/src/agat/agat_sp_compare_two_annotations/test.sh index a825e754..98287f08 100644 --- a/src/agat/agat_sp_compare_two_annotations/test.sh +++ b/src/agat/agat_sp_compare_two_annotations/test.sh @@ -1,5 +1,7 @@ #!/bin/bash +set -eo pipefail + ## VIASH START ## VIASH END From a10f6d24819398f3659adf852576947b63418137 Mon Sep 17 00:00:00 2001 From: Leila011 Date: Mon, 19 Aug 2024 17:03:45 +0200 Subject: [PATCH 13/15] create temporary directory and clean up on exit --- .../agat_sp_compare_two_annotations/test.sh | 37 +++++++++++-------- 1 file changed, 21 insertions(+), 16 deletions(-) diff --git a/src/agat/agat_sp_compare_two_annotations/test.sh b/src/agat/agat_sp_compare_two_annotations/test.sh index 98287f08..96ae5aa5 100644 --- a/src/agat/agat_sp_compare_two_annotations/test.sh +++ b/src/agat/agat_sp_compare_two_annotations/test.sh @@ -7,67 +7,72 @@ set -eo pipefail test_dir="${meta_resources_dir}/test_data" +# create temporary directory and clean up on exit +TMPDIR=$(mktemp -d "$meta_temp_dir/$meta_functionality_name-XXXXXX") +function clean_up { + [[ -d "$TMPDIR" ]] && rm -rf "$TMPDIR" +} +trap clean_up EXIT + echo "> Run $meta_name with test data: identical files" "$meta_executable" \ --gff1 "$test_dir/1.gff" \ --gff2 "$test_dir/1.gff" \ - --output_dir out_data + --output_dir "$TMPDIR/output" echo ">> Checking output" -[ ! -f "out_data/report.txt" ] && echo "Output file report.txt does not exist" && exit 1 +[ ! -f "$TMPDIR/output/report.txt" ] && echo "Output file report.txt does not exist" && exit 1 echo ">> Check if output is empty" -[ ! -s "out_data/report.txt" ] && echo "Output file report.txt is empty" && exit 1 +[ ! -s "$TMPDIR/output/report.txt" ] && echo "Output file report.txt is empty" && exit 1 echo ">> Check if output matches expected output" -diff <(tail -n +2 "out_data/report.txt") <(tail -n +2 "$test_dir/agat_sp_compare_two_annotations_1.txt") +diff <(tail -n +2 "$TMPDIR/output/report.txt") <(tail -n +2 "$test_dir/agat_sp_compare_two_annotations_1.txt") if [ $? -ne 0 ]; then echo "Output file report.txt does not match expected output" exit 1 fi -rm -rf out_data +rm -rf $TMPDIR/output echo "> Run $meta_name with test data: different files" "$meta_executable" \ --gff1 "$test_dir/file1.gff" \ --gff2 "$test_dir/file2.gff" \ - --output_dir out_data + --output_dir "$TMPDIR/output" echo ">> Checking output" -[ ! -f "out_data/report.txt" ] && echo "Output file report.txt does not exist" && exit 1 +[ ! -f "$TMPDIR/output/report.txt" ] && echo "Output file report.txt does not exist" && exit 1 echo ">> Check if output is empty" -[ ! -s "out_data/report.txt" ] && echo "Output file report.txt is empty" && exit 1 +[ ! -s "$TMPDIR/output/report.txt" ] && echo "Output file report.txt is empty" && exit 1 echo ">> Check if output matches expected output" -diff <(tail -n +2 "out_data/report.txt") <(tail -n +2 "$test_dir/agat_sp_compare_two_annotations_2.txt") +diff <(tail -n +2 "$TMPDIR/output/report.txt") <(tail -n +2 "$test_dir/agat_sp_compare_two_annotations_2.txt") if [ $? -ne 0 ]; then echo "Output file report.txt does not match expected output" exit 1 fi -rm -rf out_data +rm -rf $TMPDIR/output echo "> Run $meta_name with test data: different files" "$meta_executable" \ --gff1 "$test_dir/file2.gff" \ --gff2 "$test_dir/file1.gff" \ - --output_dir out_data + --output_dir "$TMPDIR/output" echo ">> Checking output" -[ ! -f "out_data/report.txt" ] && echo "Output file report.txt does not exist" && exit 1 +[ ! -f "$TMPDIR/output/report.txt" ] && echo "Output file report.txt does not exist" && exit 1 echo ">> Check if output is empty" -[ ! -s "out_data/report.txt" ] && echo "Output file report.txt is empty" && exit 1 +[ ! -s "$TMPDIR/output/report.txt" ] && echo "Output file report.txt is empty" && exit 1 echo ">> Check if output matches expected output" -diff <(tail -n +2 "out_data/report.txt") <(tail -n +2 "$test_dir/agat_sp_compare_two_annotations_3.txt") +diff <(tail -n +2 "$TMPDIR/output/report.txt") <(tail -n +2 "$test_dir/agat_sp_compare_two_annotations_3.txt") if [ $? -ne 0 ]; then echo "Output file report.txt does not match expected output" exit 1 fi -rm -rf out_data - echo "> Test successful" \ No newline at end of file From d4e0718835ef3fb18206e31334a306fbf1129cd2 Mon Sep 17 00:00:00 2001 From: Leila011 Date: Mon, 19 Aug 2024 17:04:56 +0200 Subject: [PATCH 14/15] update config: add keywords, add requirements, fix --output_dir type, update --config description --- .../agat_sp_compare_two_annotations/config.vsh.yaml | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml b/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml index e2d6c533..343fbf3c 100644 --- a/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml +++ b/src/agat/agat_sp_compare_two_annotations/config.vsh.yaml @@ -2,7 +2,7 @@ name: agat_sp_compare_two_annotations namespace: agat description: | The script aims to compare two annotation of the same assembly. It - providea information about split/fusion of genes between the two + provides information about split/fusion of genes between the two annotations. The most common cases are: * 1 => 0 ( gene uniq to file1) @@ -21,7 +21,7 @@ description: | The script output a folder containing a report of number of different cases as well as a file per case type listing per line the gene feature's ID involved in each case. -keywords: [gene annotations] +keywords: [gene annotations, GFF] links: homepage: https://github.com/NBISweden/AGAT documentation: https://agat.readthedocs.io/en/latest/tools/agat_sp_compare_two_annotations.html @@ -30,6 +30,8 @@ links: references: doi: 10.5281/zenodo.3552717 license: GPL-3.0 +requirements: + - commands: [agat] authors: - __merge__: /src/_authors/leila_paquay.yaml roles: [ author, maintainer ] @@ -54,7 +56,7 @@ argument_groups: alternatives: [-o, --out, --output] description: | Output folder. It contains a report that summarizes the type and number of cases, as well as a file per case type containing one case per line with the list of gene feature's ID (or other type of feature level1) from file1 then file2 separated by a |. - type: string + type: file direction: output required: true example: output_folder @@ -71,7 +73,7 @@ argument_groups: - name: --config alternatives: [-c] description: | - Input AGAT config file. By default, AGAT takes as input `agat_config.yaml` file from the working directory if any, otherwise it takes the original `agat_config.yaml` shipped with AGAT. To get the `agat_config.yaml` locally type: `agat config --expose`. The `--config` option gives you the possibility to use your own AGAT config file (located elsewhere or named differently). + AGAT config file. By default AGAT takes the original agat_config.yaml shipped with AGAT. The `--config` option gives you the possibility to use your own AGAT config file (located elsewhere or named differently). type: file required: false example: custom_config.yaml From d435a85395b848e1de0148d5918a451ef6cc946a Mon Sep 17 00:00:00 2001 From: Leila011 Date: Mon, 19 Aug 2024 17:07:18 +0200 Subject: [PATCH 15/15] update changelog --- CHANGELOG.md | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index d51fcf12..9b046e84 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -20,16 +20,15 @@ based on a provided sequence IDs or region coordinates file (PR #85). * `agat`: - - `agat_convert_sp_gff2gtf`: convert any GTF/GFF file into a proper GTF file (PR #76). - - `/agat_convert_bed2gff`: convert bed file to gff format (PR #97). + - `agat/agat_convert_sp_gff2gtf`: convert any GTF/GFF file into a proper GTF file (PR #76). + - `agat/agat_convert_bed2gff`: convert bed file to gff format (PR #97). + - `agat/agat_convert_embl2gff`: convert an EMBL file into GFF format (PR #99). + - `agat/agat_sp_compare_two_annotations`: compare two annotation of the same assembly (PR #127). * `bedtools`: - `bedtools/bedtools_intersect`: Allows one to screen for overlaps between two sets of genomic features (PR #94). - `bedtools/bedtools_sort`: Sorts a feature file (bed/gff/vcf) by chromosome and other criteria (PR #98). - -* `agat/agat_convert_embl2gff`: convert an EMBL file into GFF format (PR #99). - ## MINOR CHANGES * `busco` components: update BUSCO to `5.7.1` (PR #72).