-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathLICENSE
138 lines (110 loc) · 4.77 KB
/
LICENSE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
################################################################################
#
# Author: Victor Velasco-Pardo <[email protected]>
#
# This program is distributed under the terms of GNU GPL v3, and it comes with
# no warranty of any kind
#
# This R package contains R code written by Nicola Roberts, downloadable from https://github.com/nicolaroberts/hdp
# as well as C code written by Yee Whye Teh and downloadable from
# http://www.stats.ox.ac.uk/~teh/research/npbayes/npbayes-r21.tgz
#
# Copyright statement on Nicola Roberts' code:
# ===============================================================
# Copyright (c) 2015 Genome Research Ltd.
#
# Author: Nicola Roberts <[email protected]>
#
# This program is free software: you can redistribute it and/or modify it under
# the terms of the GNU General Public License version 3 as published by the Free Software
# Foundation.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details <http://www.gnu.org/licenses/>.
#
# This R package is adapted from MATLAB and C code written by Yee Whye Teh, downloaded from
# http://www.stats.ox.ac.uk/~teh/research/npbayes/npbayes-r21.tgz
#
# Copyright statement on Yee Whye Teh's code:
# ===============================================================
# (C) Copyright 2004, Yee Whye Teh (ywteh -at- eecs -dot- berkeley -dot- edu)
# http://www.cs.berkeley.edu/~ywteh
#
# Permission is granted for anyone to copy, use, or modify these
# programs and accompanying documents for purposes of research or
# education, provided this copyright notice is retained, and note is
# made of any changes that have been made.
#
# These programs and documents are distributed without any warranty,
# express or implied. As the programs were written for research
# purposes only, they have not been tested to the degree that would be
# advisable in any important application. All use of these programs is
# entirely at the user's own risk.
# ===============================================================
#
################################################################################
File: R/aaa-generics-input.R
Copyright: 2015 Nicola D Roberts
Comment: Obtained from R/iterate.R by Nicola Roberts
File: R/hdpExtra_classes.R
Copyright: 2023 Victor Velasco-Pardo
File: R/hdpExtra_diagnostic_plots.R
Copyright: 2023 Victor Velasco-Pardo
File: R/hdpExtra_iterate.R
Copyright: 2004 Yee Whye Teh
2015 Nicola D Roberts
Comment: Obtained and modified from R/iterate.R by Nicola Roberts
File: R/hdp_plot_sig_uncertainty.R
Copyright: 2023 Victor Velasco-Pardo
File: R/hdpExtra_posterior.R
Copyright: 2004 Yee Whye Teh
2015 Nicola D Roberts
2023 Victor Velasco-Pardo
Comment: Obtained and adapted from R/hdp_posterior.R by Nicola Roberts
File: R/hdp_getstate.R
Copyright: 2004 Yee Whye Teh
2015 Nicola D Roberts
Comment: Obtained from R/hdp_getstate.R by Nicola Roberts
File: R/hdp_plot_sig_uncertainty.R
Copyright: 2023 Victor Velasco-Pardo
File: R/hdp_postprocessing.R
Copyright: 2023 Victor Velasco-Pardo
File: R/hdp_sample_cluster_params.R
Copyright: 2023 Victor Velasco-Pardo
File: src/R-base.c
Copyright: 2004 Yee Whye Teh
2015 Nicola D Roberts
Comment: Adapted by Nicola Roberts from npbayesr21/hdpmix/base.c by Yee Whye Teh
File: src/R-conparam.c
Copyright: 2004 Yee Whye Teh
2015 Nicola D Roberts
Comment: Adapted by Nicola Roberts from npbayesr21/hdpmix/conparam.c by Yee Whye Teh
File: src/R-dp.c
Copyright: 2004 Yee Whye Teh
2015 Nicola D Roberts
Comment: Adapted by Nicola Roberts from npbayesr21/hdpmix/dp.c by Yee Whye Teh
File: src/R-hdp.c
Copyright: 2004 Yee Whye Teh
2015 Nicola D Roberts
2023 Victor Velasco-Pardo
Comment: Adapted by Nicola Roberts from npbayesr21/hdpmix/hdp.c by Yee Whye Teh
Comment: Further adapted by Victor Velasco-Pardo for compatibility with hdpExtra
File: src/R-hdpMultinomial_iterate.c
Copyright: 2004 Yee Whye Teh
2015 Nicola D Roberts
2023 Victor Velasco-Pardo
Comment: Adapted by Nicola Roberts from npbayesr21/hdpmix/hdpMultinomial_iterate.c by Yee Whye Teh
Comment: Further adapted by Victor Velasco-Pardo for compatibility with hdpExtra
File: src/R-multinomial.c
Copyright: 2004 Yee Whye Teh
2015 Nicola D Roberts
Comment: Adapted by Nicola Roberts from npbayesr21/distributions/multinomial/multinomial.c by Yee Whye Teh
File: src/R-utils.c
Copyright: 2004 Yee Whye Teh
2015 Nicola D Roberts
Comment: Adapted by Nicola Roberts from npbayesr21/utilities/mxutils.c by Yee Whye Teh
File: src/randutils.c
Copyright: 2004 Yee Whye Teh
Comment: Original in npbayesr21/utilities/randutils.c by Yee Whye Teh