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-minPrivateClusterSize error #18

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Ithinky opened this issue Aug 22, 2023 · 0 comments
Open

-minPrivateClusterSize error #18

Ithinky opened this issue Aug 22, 2023 · 0 comments

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@Ithinky
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Ithinky commented Aug 22, 2023

Hi,
Thanks for your great tool!

When I set -minPrivateClusterSize 120 -minClusterSize 20 -cp, only minClusterSize works and all the clusters are larger than 20. Howerver, the -minPrivateClusterSize seems fails, and some private clusters are smaller than 120 such as node1 cluster.

Would you give me some help? The log is as follows:
--- PHYLOGENETIC CONSTRAINT GRAPH ---
numNodes = 29, numEdges = 50
NODES:
level = 8:
Node 0:
level = 7:
level = 6:
Node 3: group tag = 0111111, Size: 157
VAF Mean: [ 0.75 0.85 0.99 0.99 0.99 0.93 ]
Stdev: [ 0.19 0.14 0 0 0.01 0.02 ]
level = 5:
Node 4: group tag = 0101111, Size: 125
VAF Mean: [ 0.74 0.98 0.98 0.98 0.93 ]
Stdev: [ 0.18 0.07 0.07 0.08 0.05 ]
Node 7: group tag = 0011111, Size: 614
VAF Mean: [ 0.8 0.98 0.98 0.99 0.93 ]
Stdev: [ 0.19 0.02 0.05 0.03 0.02 ]
level = 4:
Node 8: group tag = 0011110, Size: 35
VAF Mean: [ 0.75 0.99 0.98 0.99 ]
Stdev: [ 0.19 0 0.02 0.01 ]
Node 11: group tag = 0001111, Size: 591
VAF Mean: [ 0.98 0.98 0.98 0.93 ]
Stdev: [ 0.07 0.06 0.07 0.03 ]
Node 26: group tag = 0011011, Size: 80
VAF Mean: [ 0.27 0.98 0.99 0.93 ]
Stdev: [ 0.21 0 0.01 0.01 ]
level = 3:
Node 5: group tag = 0011100, Size: 21
VAF Mean: [ 0.78 0.94 0.95 ]
Stdev: [ 0.21 0.17 0.16 ]
Node 6: group tag = 0001110, Size: 66
VAF Mean: [ 0.95 0.97 0.96 ]
Stdev: [ 0.12 0.1 0.1 ]
Node 21: group tag = 0001011, Size: 130
VAF Mean: [ 0.98 0.99 0.93 ]
Stdev: [ 0 0.01 0.01 ]
level = 2:
Node 9: group tag = 0010100, Size: 229
VAF Mean: [ 0.62 0.99 ]
Stdev: [ 0.23 0.01 ]
Node 10: group tag = 0010100, Size: 21
VAF Mean: [ 0.29 0.88 ]
Stdev: [ 0.14 0.16 ]
Node 22: group tag = 0001010, Size: 361
VAF Mean: [ 0.97 0.93 ]
Stdev: [ 0.05 0.14 ]
Node 27: group tag = 0010001, Size: 24
VAF Mean: [ 0.21 0.93 ]
Stdev: [ 0.14 0.02 ]
level = 1:
Node 1: group tag = 0000010, Size: 40
VAF Mean: [ 0.89 ]
Stdev: [ 0.11 ]
Node 2: group tag = 0000010, Size: 56
VAF Mean: [ 0.31 ]
Stdev: [ 0.06 ]
Node 12: group tag = 0000100, Size: 379
VAF Mean: [ 0.98 ]
Stdev: [ 0.02 ]
Node 13: group tag = 0000100, Size: 114
VAF Mean: [ 0.23 ]
Stdev: [ 0.01 ]
Node 14: group tag = 0000100, Size: 38
VAF Mean: [ 0.54 ]
Stdev: [ 0.2 ]
Node 15: group tag = 0001000, Size: 232
VAF Mean: [ 0.18 ]
Stdev: [ 0 ]
Node 16: group tag = 0001000, Size: 84
VAF Mean: [ 0.97 ]
Stdev: [ 0.03 ]
Node 17: group tag = 0100000, Size: 327
VAF Mean: [ 0.41 ]
Stdev: [ 0.06 ]
Node 18: group tag = 0100000, Size: 38
VAF Mean: [ 0.98 ]
Stdev: [ 0.02 ]
Node 19: group tag = 0100000, Size: 6494
VAF Mean: [ 0.16 ]
Stdev: [ 0.04 ]
Node 20: group tag = 0100000, Size: 384
VAF Mean: [ 0.68 ]
Stdev: [ 0.1 ]
Node 23: group tag = 0010000, Size: 6091
VAF Mean: [ 0.14 ]
Stdev: [ 0.03 ]
Node 24: group tag = 0010000, Size: 269
VAF Mean: [ 0.38 ]
Stdev: [ 0.07 ]
Node 25: group tag = 0010000, Size: 147
VAF Mean: [ 0.67 ]
Stdev: [ 0.11 ]
Node 28: group tag = 0000001, Size: 307
VAF Mean: [ 0.93 ]
Stdev: [ 0.01 ]
level = 0:
EDGES:
0 -> 3
0 -> 18
1 -> 2
3 -> 4
3 -> 7
4 -> 11
5 -> 9
5 -> 10
6 -> 22
7 -> 8
7 -> 11
7 -> 26
8 -> 5
8 -> 6
9 -> 10
9 -> 12
9 -> 13
9 -> 14
9 -> 23
9 -> 24
9 -> 25
10 -> 12
10 -> 13
10 -> 14
10 -> 23
10 -> 24
11 -> 6
11 -> 21
12 -> 13
12 -> 14
14 -> 13
16 -> 15
17 -> 19
18 -> 17
18 -> 19
18 -> 20
20 -> 17
20 -> 19
21 -> 22
22 -> 1
22 -> 2
22 -> 15
22 -> 16
24 -> 23
25 -> 23
25 -> 24
26 -> 21
26 -> 27
27 -> 23
27 -> 28

Found 0 valid tree(s)
Adjusting the network...
1000000
2000000
3000000
4000000
5000000
6000000
7000000
8000000
9000000
10000000
Found 0 valid trees after network adjustments

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