Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Extracting clonal genotypes #7

Open
jmfa opened this issue Nov 13, 2017 · 0 comments
Open

Extracting clonal genotypes #7

jmfa opened this issue Nov 13, 2017 · 0 comments

Comments

@jmfa
Copy link

jmfa commented Nov 13, 2017

Dear Victoria,

Is there a simple way to extract the genotypes of the clones inferred by Lichee?
While the output (*trees.txt) contains which mutations occur at which clone (and the samples at which each clone is present), I was wondering if there's an option to get the actual clonal genotypes (e.g., Clone 1: AGCGGTCAAGGGACG.., etc).

Thank you very much in advance.
Joao

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant