From b5bed0e414cb2b1bea6d4924beedd7776f3e70ee Mon Sep 17 00:00:00 2001
From: wdecoster <decosterwouter@gmail.com>
Date: Mon, 29 Jul 2024 10:22:35 +0200
Subject: [PATCH] fix checking for remote alignment file

---
 Cargo.toml   | 2 +-
 src/utils.rs | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/Cargo.toml b/Cargo.toml
index 65097c5..189718f 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "STRdust"
-version = "0.8.7"
+version = "0.8.8"
 edition = "2021"
 
 
diff --git a/src/utils.rs b/src/utils.rs
index 3d5b786..c6c458c 100644
--- a/src/utils.rs
+++ b/src/utils.rs
@@ -25,7 +25,7 @@ pub fn reader(filename: &str) -> Box<dyn BufRead> {
 }
 
 pub fn check_files_exist(args: &crate::Cli) {
-    if !Path::new(&args.bam).exists() {
+    if !Path::new(&args.bam).exists() && !args.bam.starts_with("s3") && !args.bam.starts_with("https://") {
         error!("Alignment file not found: {}", args.bam);
         std::process::exit(1);
     }