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demo_task1, running demo.py script #2

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sneh-debug opened this issue Feb 18, 2020 · 1 comment
Open

demo_task1, running demo.py script #2

sneh-debug opened this issue Feb 18, 2020 · 1 comment

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@sneh-debug
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i created folders in Data folder which include original and preprocessed. And then i ran demo.py i got this output:
wcclab@wcclab-HP-280-Pro-G4-SFF-Business-PC:~/brats_2019-master/demo_task1$ python3 demo.py
/home/wcclab/.local/lib/python3.5/site-packages/dicom/init.py:53: UserWarning:
This code is using an older version of pydicom, which is no longer
maintained as of Jan 2017. You can access the new pydicom features and API
by installing pydicom from PyPI.
See 'Transitioning to pydicom 1.x' section at pydicom.readthedocs.org
for more information.

warnings.warn(msg)
/home/wcclab/.local/lib/python3.5/site-packages/nilearn/init.py:68: FutureWarning: Python 3.5 support is deprecated and will be removed in a future release. Consider switching to Python 3.6 or 3.7
_python_deprecation_warnings()
Using TensorFlow backend.
0it [00:00, ?it/s]
0it [00:00, ?it/s]
0it [00:00, ?it/s]
0it [00:00, ?it/s]

/home/wcclab/brats_2019-master/demo_task1/train_model.py(130)main()
-> if overwrite or not os.path.exists(config["data_file"]):
(Pdb)

Which means?? I tried to pass boolean value as mentioned in read file, but not able to get output?/

@woodywff
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We didn't use pydicom to load MRI images, we used nibabel to do that.

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