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main.nf
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#!/usr/bin/env nextflow
/*
========================================================================================
nf-core/eqtl
========================================================================================
Github : https://github.com/nf-core/eqtl
Website: https://nf-co.re/eqtl
Slack : https://nfcore.slack.com/channels/eqtl
----------------------------------------------------------------------------------------
*/
nextflow.enable.dsl = 2
/*
========================================================================================
GENOME PARAMETER VALUES
========================================================================================
*/
params.fasta = WorkflowMain.getGenomeAttribute(params, 'fasta')
/*
========================================================================================
VALIDATE & PRINT PARAMETER SUMMARY
========================================================================================
*/
// WorkflowMain.initialise(workflow, params, log)
/*
========================================================================================
NAMED WORKFLOW FOR PIPELINE
========================================================================================
*/
include { EQTL } from './workflows/eqtl'
//
// WORKFLOW: Run main nf-core/eqtl analysis pipeline
//
workflow NFCORE_EQTL {
EQTL ()
}
/*
========================================================================================
RUN ALL WORKFLOWS
========================================================================================
*/
//
// WORKFLOW: Execute a single named workflow for the pipeline
// See: https://github.com/nf-core/rnaseq/issues/619
//
workflow {
NFCORE_EQTL ()
}
/*
========================================================================================
THE END
========================================================================================
*/
workflow.onComplete {
log.info "Pipeline completed at: $workflow.complete"
log.info "Command line: $workflow.commandLine"
log.info "Execution status: ${ workflow.success ? 'OK' : 'failed' }"
if (params.email || params.email_on_fail) {
NfcoreTemplate.email(workflow, params, summary_params, projectDir, log, multiqc_report)
}
NfcoreTemplate.summary(workflow, params, log)
}