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my_environment.yml
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my_environment.yml
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name: LeTRS
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- _r-mutex=1.0.0=anacondar_1
- _sysroot_linux-64_curr_repodata_hack=3=haa98f57_10
- binutils_impl_linux-64=2.35.1=h27ae35d_9
- binutils_linux-64=2.35.1=h454624a_30
- blas=1.0=mkl
- bottleneck=1.3.2=py37heb32a55_1
- bwidget=1.9.11=1
- bzip2=1.0.8=h7b6447c_0
- ca-certificates=2021.10.26=h06a4308_2
- cairo=1.14.12=h8948797_3
- certifi=2021.10.8=py37h89c1867_1
- curl=7.67.0=hbc83047_0
- expat=2.2.10=he6710b0_2
- fontconfig=2.13.1=h6c09931_0
- freetype=2.11.0=h70c0345_0
- fribidi=1.0.10=h7b6447c_0
- gcc_impl_linux-64=7.5.0=h7105cf2_17
- gcc_linux-64=7.5.0=h8f34230_30
- gfortran_impl_linux-64=7.5.0=ha8c8e06_17
- gfortran_linux-64=7.5.0=h96bb648_30
- giflib=5.1.4=h14c3975_1
- glib=2.63.1=h5a9c865_0
- graphite2=1.3.14=h23475e2_0
- graphviz=2.40.1=h21bd128_2
- gsl=2.4=h14c3975_4
- gxx_impl_linux-64=7.5.0=h0a5bf11_17
- gxx_linux-64=7.5.0=hffc177d_30
- harfbuzz=1.8.8=hffaf4a1_0
- hisat2=2.1.0=py37hc9558a2_4
- htslib=1.9=ha228f0b_7
- icu=58.2=he6710b0_3
- intel-openmp=2021.4.0=h06a4308_3561
- jpeg=9d=h7f8727e_0
- k8=0.2.5=h9a82719_1
- kernel-headers_linux-64=3.10.0=h57e8cba_10
- krb5=1.16.4=h173b8e3_0
- ld_impl_linux-64=2.35.1=h7274673_9
- libblas=3.9.0=12_linux64_mkl
- libcurl=7.67.0=h20c2e04_0
- libdb=6.2.32=hf484d3e_0
- libdeflate=1.0=h14c3975_1
- libedit=3.1.20181209=hc058e9b_0
- libffi=3.2.1=hf484d3e_1007
- libgcc-devel_linux-64=7.5.0=hbbeae57_17
- libgcc-ng=11.2.0=h1d223b6_11
- libgd=2.2.5=h8e06009_4
- libgfortran-ng=7.5.0=ha8ba4b0_17
- libgfortran4=7.5.0=ha8ba4b0_17
- libgomp=11.2.0=h1d223b6_11
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=12_linux64_mkl
- libpng=1.6.37=hbc83047_0
- libssh2=1.9.0=h1ba5d50_1
- libstdcxx-devel_linux-64=7.5.0=hf0c5c8d_17
- libstdcxx-ng=9.3.0=hd4cf53a_17
- libtiff=4.1.0=h2733197_1
- libuuid=1.0.3=h7f8727e_2
- libwebp=1.0.1=h8e7db2f_0
- libxcb=1.14=h7b6447c_0
- libxml2=2.9.12=h03d6c58_0
- libxslt=1.1.34=hc22bd24_0
- lz4-c=1.9.3=h295c915_1
- make=4.2.1=h1bed415_1
- minimap2=2.17=h5bf99c6_4
- mkl=2021.4.0=h06a4308_640
- mkl-service=2.4.0=py37h7f8727e_0
- mkl_fft=1.3.1=py37hd3c417c_0
- mkl_random=1.2.2=py37h51133e4_0
- ncurses=6.1=he6710b0_1
- numexpr=2.7.3=py37h22e1b3c_1
- numpy=1.21.2=py37h20f2e39_0
- numpy-base=1.21.2=py37h79a1101_0
- openssl=1.1.1l=h7f98852_0
- pandas=1.3.4=py37h8c16a72_0
- pango=1.42.4=h049681c_0
- pcre=8.45=h295c915_0
- perl=5.26.2=h14c3975_0
- perl-aceperl=1.92=pl526_2
- perl-algorithm-munkres=0.08=pl526_1
- perl-apache-test=1.40=pl526_1
- perl-app-cpanminus=1.7044=pl526_1
- perl-appconfig=1.71=pl526_1
- perl-array-compare=3.0.1=pl526_1
- perl-autoloader=5.74=pl526_2
- perl-base=2.23=pl526_1
- perl-bio-phylo=0.58=pl526_1
- perl-bioperl-core=1.007002=pl526_1
- perl-business-isbn=3.004=pl526_0
- perl-business-isbn-data=20140910.003=pl526_0
- perl-cache-cache=1.08=pl526_0
- perl-carp=1.38=pl526_3
- perl-cgi=4.44=pl526h14c3975_1
- perl-class-inspector=1.34=pl526_0
- perl-class-load=0.25=pl526_0
- perl-class-load-xs=0.10=pl526h6bb024c_2
- perl-class-method-modifiers=2.12=pl526_0
- perl-clone=0.42=pl526h516909a_0
- perl-common-sense=3.74=pl526_2
- perl-compress-raw-zlib=2.087=pl526hc9558a2_0
- perl-constant=1.33=pl526_1
- perl-convert-binary-c=0.78=pl526h6bb024c_3
- perl-convert-binhex=1.125=pl526_1
- perl-crypt-rc4=2.02=pl526_1
- perl-data-dumper=2.173=pl526_0
- perl-data-optlist=0.110=pl526_2
- perl-data-stag=0.14=pl526_1
- perl-date-format=2.30=pl526_2
- perl-db-file=1.855=pl526h516909a_0
- perl-dbd-sqlite=1.64=pl526h516909a_0
- perl-dbi=1.642=pl526_0
- perl-devel-globaldestruction=0.14=pl526_0
- perl-devel-overloadinfo=0.005=pl526_0
- perl-devel-stacktrace=2.04=pl526_0
- perl-digest-hmac=1.03=pl526_3
- perl-digest-md5=2.55=pl526_0
- perl-digest-perl-md5=1.9=pl526_1
- perl-digest-sha1=2.13=pl526h6bb024c_1
- perl-dist-checkconflicts=0.11=pl526_2
- perl-dynaloader=1.25=pl526_1
- perl-email-date-format=1.005=pl526_2
- perl-encode=2.88=pl526_1
- perl-encode-locale=1.05=pl526_6
- perl-error=0.17027=pl526_1
- perl-eval-closure=0.14=pl526h6bb024c_4
- perl-exporter=5.72=pl526_1
- perl-exporter-tiny=1.002001=pl526_0
- perl-extutils-makemaker=7.36=pl526_1
- perl-file-listing=6.04=pl526_1
- perl-file-path=2.16=pl526_0
- perl-file-slurp-tiny=0.004=pl526_1
- perl-file-temp=0.2304=pl526_2
- perl-file-which=1.23=pl526_0
- perl-font-afm=1.20=pl526_2
- perl-font-ttf=1.06=pl526_0
- perl-gd=2.71=pl526he860b03_0
- perl-getopt-long=2.50=pl526_1
- perl-graph=0.9704=pl526_1
- perl-graphviz=2.24=pl526h734ff71_0
- perl-html-element-extended=1.18=pl526_1
- perl-html-entities-numbered=0.04=pl526_1
- perl-html-formatter=2.16=pl526_0
- perl-html-parser=3.72=pl526h6bb024c_5
- perl-html-tableextract=2.13=pl526_2
- perl-html-tagset=3.20=pl526_3
- perl-html-tidy=1.60=pl526_0
- perl-html-tree=5.07=pl526_1
- perl-html-treebuilder-xpath=0.14=pl526_1
- perl-http-cookies=6.04=pl526_0
- perl-http-daemon=6.01=pl526_1
- perl-http-date=6.02=pl526_3
- perl-http-message=6.18=pl526_0
- perl-http-negotiate=6.01=pl526_3
- perl-image-info=1.38=pl526_1
- perl-image-size=3.300=pl526_2
- perl-io-html=1.001=pl526_2
- perl-io-sessiondata=1.03=pl526_1
- perl-io-socket-ssl=2.066=pl526_0
- perl-io-string=1.08=pl526_3
- perl-io-stringy=2.111=pl526_1
- perl-io-tty=1.12=pl526_1
- perl-ipc-run=20180523.0=pl526_0
- perl-ipc-sharelite=0.17=pl526h6bb024c_1
- perl-jcode=2.07=pl526_2
- perl-json=4.02=pl526_0
- perl-json-xs=2.34=pl526h6bb024c_3
- perl-lib=0.63=pl526_1
- perl-libwww-perl=6.39=pl526_0
- perl-libxml-perl=0.08=pl526_2
- perl-list-compare=0.53=pl526_1
- perl-list-moreutils=0.428=pl526_1
- perl-list-moreutils-xs=0.428=pl526_0
- perl-list-uniq=0.20=pl526_1
- perl-lwp-mediatypes=6.04=pl526_0
- perl-lwp-protocol-https=6.07=pl526_4
- perl-lwp-simple=6.15=pl526h470a237_4
- perl-mailtools=2.21=pl526_0
- perl-math-cdf=0.1=pl526h14c3975_5
- perl-math-derivative=1.01=pl526_0
- perl-math-random=0.72=pl526h14c3975_2
- perl-math-spline=0.02=pl526_2
- perl-mime-base64=3.15=pl526_1
- perl-mime-lite=3.030=pl526_1
- perl-mime-tools=5.508=pl526_1
- perl-mime-types=2.17=pl526_0
- perl-mldbm=2.05=pl526_1
- perl-module-implementation=0.09=pl526_2
- perl-module-runtime=0.016=pl526_1
- perl-module-runtime-conflicts=0.003=pl526_0
- perl-moo=2.003004=pl526_0
- perl-moose=2.2011=pl526hf484d3e_1
- perl-mozilla-ca=20180117=pl526_1
- perl-mro-compat=0.13=pl526_0
- perl-net-http=6.19=pl526_0
- perl-net-ssleay=1.88=pl526h90d6eec_0
- perl-ntlm=1.09=pl526_4
- perl-ole-storage_lite=0.19=pl526_3
- perl-package-deprecationmanager=0.17=pl526_0
- perl-package-stash=0.38=pl526hf484d3e_1
- perl-package-stash-xs=0.28=pl526hf484d3e_1
- perl-params-util=1.07=pl526h6bb024c_4
- perl-parent=0.236=pl526_1
- perl-parse-recdescent=1.967015=pl526_0
- perl-pathtools=3.75=pl526h14c3975_1
- perl-pdf-api2=2.035=pl526_0
- perl-pod-escapes=1.07=pl526_1
- perl-pod-usage=1.69=pl526_1
- perl-postscript=0.06=pl526_2
- perl-regexp-common=2017060201=pl526_0
- perl-role-tiny=2.000008=pl526_0
- perl-scalar-list-utils=1.52=pl526h516909a_0
- perl-set-scalar=1.29=pl526_2
- perl-soap-lite=1.19=pl526_1
- perl-socket=2.027=pl526_1
- perl-sort-naturally=1.03=pl526_2
- perl-spreadsheet-parseexcel=0.65=pl526_2
- perl-spreadsheet-writeexcel=2.40=pl526_2
- perl-statistics-descriptive=3.0702=pl526_0
- perl-statistics-r=0.34=pl526r351_3
- perl-storable=3.15=pl526h14c3975_0
- perl-sub-exporter=0.987=pl526_2
- perl-sub-exporter-progressive=0.001013=pl526_0
- perl-sub-identify=0.14=pl526h14c3975_0
- perl-sub-install=0.928=pl526_2
- perl-sub-name=0.21=pl526_1
- perl-sub-quote=2.006003=pl526_1
- perl-svg=2.84=pl526_0
- perl-svg-graph=0.02=pl526_3
- perl-task-weaken=1.06=pl526_0
- perl-template-toolkit=2.26=pl526_1
- perl-test=1.26=pl526_1
- perl-test-harness=3.42=pl526_0
- perl-test-leaktrace=0.16=pl526h14c3975_2
- perl-test-requiresinternet=0.05=pl526_0
- perl-text-balanced=2.03=pl526_3
- perl-text-wrap=2013.0523=pl526_1
- perl-tie-ixhash=1.23=pl526_2
- perl-time-hires=1.9760=pl526h14c3975_1
- perl-time-local=1.28=pl526_1
- perl-timedate=2.30=pl526_1
- perl-tree-dag_node=1.31=pl526_0
- perl-try-tiny=0.30=pl526_1
- perl-type-tiny=1.004004=pl526_0
- perl-types-serialiser=1.0=pl526_2
- perl-unicode-map=0.112=pl526h6bb024c_3
- perl-uri=1.76=pl526_0
- perl-www-robotrules=6.02=pl526_3
- perl-xml-dom=1.46=pl526_0
- perl-xml-dom-xpath=0.14=pl526_1
- perl-xml-filter-buffertext=1.01=pl526_2
- perl-xml-libxml=2.0132=pl526h7ec2d77_1
- perl-xml-libxslt=1.94=pl526_1
- perl-xml-namespacesupport=1.12=pl526_0
- perl-xml-parser=2.44=pl526h4e0c4b3_7
- perl-xml-regexp=0.04=pl526_2
- perl-xml-sax=1.02=pl526_0
- perl-xml-sax-base=1.09=pl526_0
- perl-xml-sax-expat=0.51=pl526_3
- perl-xml-sax-writer=0.57=pl526_0
- perl-xml-simple=2.25=pl526_1
- perl-xml-twig=3.52=pl526_2
- perl-xml-writer=0.625=pl526_2
- perl-xml-xpath=1.44=pl526_0
- perl-xml-xpathengine=0.14=pl526_2
- perl-xsloader=0.24=pl526_0
- perl-yaml=1.29=pl526_0
- pip=21.2.2=py37h06a4308_0
- pixman=0.40.0=h7f8727e_1
- python=3.7.6=h0371630_2
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python_abi=3.7=2_cp37m
- pytz=2021.3=pyhd3eb1b0_0
- r-assertthat=0.2.1=r35h6115d3f_1
- r-backports=1.1.6=r35hcdcec82_1
- r-base=3.5.1=h1e0a451_2
- r-callr=3.4.3=r35h6115d3f_0
- r-cli=2.0.2=r35h6115d3f_0
- r-colorspace=1.4_1=r35hcdcec82_1
- r-crayon=1.3.4=r351h6115d3f_1
- r-desc=1.2.0=r351h6115d3f_1
- r-digest=0.6.25=r35h0357c0b_1
- r-ellipsis=0.3.0=r35hcdcec82_0
- r-evaluate=0.14=r35h6115d3f_1
- r-fansi=0.4.1=r35hcdcec82_0
- r-farver=2.0.3=r35h0357c0b_0
- r-ggplot2=3.3.0=r35h6115d3f_0
- r-glue=1.4.0=r35hcdcec82_0
- r-gtable=0.3.0=r35h6115d3f_2
- r-isoband=0.2.1=r35h0357c0b_0
- r-labeling=0.3=r351h6115d3f_1
- r-lattice=0.20_41=r35hcdcec82_1
- r-lifecycle=0.2.0=r35h6115d3f_0
- r-magrittr=1.5=r351h6115d3f_1
- r-mass=7.3_51.6=r35hcdcec82_1
- r-matrix=1.2_18=r35h7fa42b6_2
- r-mgcv=1.8_31=r35h7fa42b6_0
- r-munsell=0.5.0=r351h6115d3f_1
- r-nlme=3.1_147=r35h9bbef5b_0
- r-patchwork=1.0.0=r35h6115d3f_0
- r-pillar=1.4.3=r35h6115d3f_0
- r-pkgbuild=1.0.7=r35h6115d3f_0
- r-pkgconfig=2.0.3=r35h6115d3f_0
- r-pkgload=1.0.2=r35h0357c0b_1001
- r-praise=1.0.0=r351h6115d3f_1
- r-prettyunits=1.1.1=r35h6115d3f_0
- r-processx=3.4.2=r35hcdcec82_0
- r-ps=1.3.2=r35hcdcec82_0
- r-r6=2.4.1=r35h6115d3f_0
- r-rcolorbrewer=1.1_2=r351h6115d3f_1
- r-rcpp=1.0.4.6=r35h0357c0b_0
- r-rlang=0.4.5=r35hcdcec82_2
- r-rprojroot=1.3_2=r351h6115d3f_1
- r-rstudioapi=0.11=r35h6115d3f_0
- r-scales=1.1.0=r35h6115d3f_0
- r-testthat=2.3.2=r35h0357c0b_0
- r-tibble=3.0.1=r35hcdcec82_0
- r-utf8=1.1.4=r35hcdcec82_1002
- r-vctrs=0.2.4=r35hcdcec82_0
- r-viridislite=0.3.0=r351h6115d3f_1
- r-withr=2.2.0=r35h6115d3f_0
- r-zeallot=0.1.0=r35h6115d3f_1001
- readline=7.0=h7b6447c_5
- samtools=1.9=h10a08f8_12
- setuptools=58.0.4=py37h06a4308_0
- six=1.16.0=pyhd3eb1b0_0
- sqlite=3.31.1=h7b6447c_0
- sysroot_linux-64=2.17=h57e8cba_10
- tabulate=0.8.9=py37h06a4308_0
- tidyp=1.04=h779adbc_3
- tk=8.6.11=h1ccaba5_0
- tktable=2.10=h14c3975_0
- wheel=0.37.0=pyhd3eb1b0_1
- xz=5.2.5=h7b6447c_0
- zlib=1.2.11=h7b6447c_3
- zstd=1.4.9=haebb681_0
- portcullis==1.1.2