003.Camp_iPython.txt

1. LOGIN/LOGOUT:
$ ssh username@login.camp.thecrick.org
$ exit

2. RUN GIT ON CAMP
# Start accessing a camp computer
$ srun --ntasks=1 --cpus-per-task=1 --partition=int --time=8:00:0 --mem=4G --pty bash

[hey2@int001 ~]$ pwd
/camp/home/hey2

[hey2@int001 ~]$ git clone https://github.com/yiran25/my_first_repos.git
Cloning into 'my_first_repos'...

3. RUN IPYTHON ON CAMP
1) Create a mini environment
[hey2@int001 my_first_repos]$ ls /camp/lab/znamenskiyp/home/users/hey2/
[hey2@int001 ~]$ ln -s /camp/lab/znamenskiyp/home/users/hey2/conda .conda
[hey2@int001 ~]$ ls -al

[hey2@int001 ~]$ ml Anaconda3  # import module
[hey2@int001 ~]$ conda init
Log out
Log back in again
(base) [hey2@int000 ~]$ conda
(base) [hey2@int000 ~]$ conda create -n my_first_repos jupyter  # Create a mini Jupiter environment within the destination folder

2) Activate/deactivate the python mini environment
#
# To activate this environment, use
#
#     $ conda activate my_first_repos
#
# To deactivate an active environment, use
#
#     $ conda deactivate

(base) [hey2@int000 ~]$ conda activate my_first_repos

3) Open ipython 
(my_first_repos) [hey2@int000 ~]$ ipython

In [1]: conda install pandas  # Install a package 

In [2]: import pandas

$ conda deactivate

4) Open a jupiter notebook 
[hey2@int000 ~]$ jupyter-notebook --ip=$(hostname -I | grep -o -E "10\.28\.[0-7]\.[0-9]{1,3}') --port=8080 &

exit