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environment.yml
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environment.yml
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name: epi_integration
channels:
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/
- defaults
dependencies:
- _r-mutex=1.0.0=anacondar_1
- bzip2=1.0.8=he774522_0
- ca-certificates=2023.12.12=haa95532_0
- libffi=3.4.4=hd77b12b_0
- m2w64-bwidget=1.9.10=2
- m2w64-bzip2=1.0.6=6
- m2w64-expat=2.1.1=2
- m2w64-fftw=3.3.4=6
- m2w64-flac=1.3.1=3
- m2w64-gcc-libgfortran=5.3.0=6
- m2w64-gcc-libs=5.3.0=7
- m2w64-gcc-libs-core=5.3.0=7
- m2w64-gettext=0.19.7=2
- m2w64-gmp=6.1.0=2
- m2w64-gsl=2.1=2
- m2w64-libiconv=1.14=6
- m2w64-libjpeg-turbo=1.4.2=3
- m2w64-libogg=1.3.2=3
- m2w64-libpng=1.6.21=2
- m2w64-libsndfile=1.0.26=2
- m2w64-libtiff=4.0.6=2
- m2w64-libvorbis=1.3.5=2
- m2w64-libwinpthread-git=5.0.0.4634.697f757=2
- m2w64-libxml2=2.9.3=4
- m2w64-mpfr=3.1.4=4
- m2w64-openblas=0.2.19=1
- m2w64-pcre=8.38=2
- m2w64-speex=1.2rc2=3
- m2w64-speexdsp=1.2rc3=3
- m2w64-tcl=8.6.5=3
- m2w64-tk=8.6.5=3
- m2w64-tktable=2.10=5
- m2w64-wineditline=2.101=5
- m2w64-xz=5.2.2=2
- m2w64-zlib=1.2.8=10
- msys2-conda-epoch=20160418=1
- openssl=3.0.13=h2bbff1b_0
- pip=23.3.1=py310haa95532_0
- python=3.10.13=he1021f5_0
- r-base=3.6.1=hf18239d_1
- setuptools=68.2.2=py310haa95532_0
- sqlite=3.41.2=h2bbff1b_0
- tk=8.6.12=h2bbff1b_0
- vc=14.2=h21ff451_1
- vs2015_runtime=14.27.29016=h5e58377_2
- wheel=0.41.2=py310haa95532_0
- xz=5.4.5=h8cc25b3_0
- zlib=1.2.13=h8cc25b3_0
- pip:
- anndata==0.10.5.post1
- anndata2ri==1.3.1
- array-api-compat==1.4.1
- bamnostic==1.1.10
- bio==1.6.2
- biocframe==0.5.9
- biocutils==0.1.5
- biopython==1.83
- biothings-client==0.3.1
- certifi==2024.2.2
- cffi==1.16.0
- charset-normalizer==3.3.2
- colorama==0.4.6
- contourpy==1.2.0
- cycler==0.12.1
- deprecated==1.2.14
- episcanpy==0.4.0
- exceptiongroup==1.2.0
- fonttools==4.47.2
- genomicranges==0.4.12
- gprofiler-official==1.0.0
- gseapy==1.1.2
- h5py==3.10.0
- idna==3.6
- igraph==0.10.8
- intervaltree==3.1.0
- iranges==0.2.3
- jinja2==3.1.3
- joblib==1.3.2
- kiwisolver==1.4.5
- kneed==0.8.5
- legacy-api-wrap==1.4
- leidenalg==0.10.2
- llvmlite==0.42.0
- louvain==0.8.1
- markupsafe==2.1.5
- matplotlib==3.6.3
- mygene==3.2.2
- natsort==8.4.0
- ncls==0.0.68
- networkx==3.2.1
- numba==0.59.0
- numpy==1.26.3
- packaging==23.2
- pandas==1.5.3
- patsy==0.5.6
- pillow==10.2.0
- platformdirs==4.2.0
- pooch==1.8.0
- prettytable==3.10.0
- pycparser==2.21
- pydot==2.0.0
- pyecharts==2.0.5
- pynndescent==0.5.11
- pyparsing==3.1.1
- python-dateutil==2.8.2
- python-louvain==0.16
- pytz==2024.1
- requests==2.31.0
- rpy2==3.5.15
- scanpy==1.9.8
- scib==1.1.4
- scikit-learn==1.4.0
- scikit-misc==0.3.1
- scipy==1.12.0
- seaborn==0.13.2
- session-info==1.0.0
- setuptools-scm==8.0.4
- simplejson==3.19.2
- six==1.16.0
- sortedcontainers==2.4.0
- statsmodels==0.14.1
- stdlib-list==0.10.0
- tbb==2021.11.0
- texttable==1.7.0
- threadpoolctl==3.2.0
- tomli==2.0.1
- torch==1.13.1+cu117
- torchaudio==0.13.1+cu117
- torchvision==0.14.1+cu117
- tqdm==4.66.1
- typing-extensions==4.9.0
- tzdata==2023.4
- tzlocal==5.2
- umap-learn==0.5.5
- urllib3==2.2.0
- wcwidth==0.2.13
- wrapt==1.16.0
prefix: C:\Users\liuyu\anaconda3\envs\epi_integration