diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml index 5ff4bf9..4677566 100644 --- a/.github/workflows/tests.yml +++ b/.github/workflows/tests.yml @@ -21,10 +21,11 @@ jobs: uses: actions/checkout@v4 - name: Setup Conda/Mamba - uses: conda-incubator/setup-miniconda@v2 + uses: conda-incubator/setup-miniconda@v3 with: mamba-version: "*" activate-environment: mirflowz + channel-priority: true environment-file: environment.yml auto-activate-base: false @@ -64,10 +65,11 @@ jobs: uses: actions/checkout@v4 - name: setup Conda/Mamba - uses: conda-incubator/setup-miniconda@v2 + uses: conda-incubator/setup-miniconda@v3 with: mamba-version: "*" activate-environment: mirflowz + channel-priority: true environment-file: environment.yml auto-activate-base: false @@ -90,7 +92,7 @@ jobs: snakemake-integration-test: - runs-on: ubuntu-latest + runs-on: ubuntu-20.04 defaults: run: shell: bash -l {0} @@ -101,10 +103,11 @@ jobs: uses: actions/checkout@v4 - name: setup Conda/Mamba - uses: conda-incubator/setup-miniconda@v2 + uses: conda-incubator/setup-miniconda@v3 with: mamba-version: "*" activate-environment: mirflowz + channel-priority: true environment-file: environment.yml auto-activate-base: false @@ -135,10 +138,11 @@ jobs: uses: actions/checkout@v4 - name: setup Conda/Mamba - uses: conda-incubator/setup-miniconda@v2 + uses: conda-incubator/setup-miniconda@v3 with: mamba-version: "*" activate-environment: mirflowz + channel-priority: true environment-file: environment.yml auto-activate-base: false diff --git a/README.md b/README.md index 68a49f6..4c6c24d 100644 --- a/README.md +++ b/README.md @@ -420,7 +420,7 @@ InDel or a mismatch on its sequence when compared to the canonical miRNA it maps and intersects with. _MIRFLOWZ_ employs an unambiguous notation to classify isomiRs using the -format `miRNA_name|5p-shift|3p-shift|CIGAR|MD`, where `5p-shift` and +format `miRNA_name|5p-shift|3p-shift|CIGAR|MD|read_seq`, where `5p-shift` and `3p-shift` represent the differences between the annotated mature miRNA start and end positions and those of the read alignment, respectively. diff --git a/pipeline_documentation.md b/pipeline_documentation.md index 7e1c6c2..6332027 100644 --- a/pipeline_documentation.md +++ b/pipeline_documentation.md @@ -1235,9 +1235,9 @@ with a [**custom script**][custom-script-iso-tag]. > extended ones. Each alignment gets an extra tag (`YW:Z`) with either the > (iso)miR(s) it is considered to really intersect with or an empty string > otherwise. The format of the intersecting mature miRNA species is -> `miRNA_name|5p-shift|3p-shift|CIGAR|MD`, where `5p-shift` and `3p-shift` are -> the difference between the miRNA start and end coordinates and the -> alignment's ones respectively. +> `miRNA_name|5p-shift|3p-shift|CIGAR|MD|read_name`, where `5p-shift` and +> `3p-shift` are the difference between the miRNA start and end coordinates and +> the alignment's ones respectively. - **Input** - Alignments file, filtered (`.sam`); from @@ -1261,7 +1261,7 @@ IN miRNA annotations: IN SAM record: 1-1_1 0 19 44377 255 22M * 0 0 CTACAAAGGGAAGCACTTTCTC * MD:Z:22 NH:i:1 NM:i:0 NEW TAG: - YW:Z:hsa-miR-524-5p|0|0|22M|22 + YW:Z:hsa-miR-524-5p|0|0|22M|22|CTACAAAGGGAAGCACTTTCTC Example 2 | Intersecting an isomiR (no shifts) @@ -1271,7 +1271,7 @@ IN miRNA annotations: IN SAM record: 1-1_1 0 19 44377 1 11M3I11M * 0 0 CTACAAAGGGAGGTAGCACTTTCTC * HI:i:0 MD:Z:22 NH:i:1 NM:i:3 NEW TAG: - YW:Z:hsa-miR-524-5p|0|0|11M3I11M|22 + YW:Z:hsa-miR-524-5p|0|0|11M3I11M|22|CTACAAAGGGAGGTAGCACTTTCTC Example 3 | Intersecting an isomiR (no InDels nor mismatches) @@ -1281,7 +1281,7 @@ IN miRNA annotations: IN SAM record: 1-1_1 0 19 5338 255 21M * 0 0 TCAAAACTGAGGGGCATTTTC * MD:Z:21 NH:i:1 NM:i:0 NEW TAG: - YW:Z:hsa-miR-1323|0|-1|21M|21 + YW:Z:hsa-miR-1323|0|-1|21M|21|TCAAAACTGAGGGGCATTTTC Example 4 | Not intersecting an (iso)miR @@ -1355,20 +1355,20 @@ Data: Contribution: 4/2 = 2 miRNA species: - Tag name: hsa-miR-520b-3p|0|0|21M|21 + Tag name: hsa-miR-520b-3p|0|0|21M|21|AAAGTGCTTCCTTTTAGAGGG Type: Canonical Table name: hsa-miR-520b-3p Total count: 2 - Tag name: hsa-miR-520c-3p|0|-1|21M|21 + Tag name: hsa-miR-520c-3p|0|-1|21M|21|AAAGTGCTTCCTTTTAGAGGG Type: isomiR - Table name: hsa-miR-520c-3p|0|-1|21M|21 + Table name: hsa-miR-520c-3p|0|-1|21M|21|AAAGTGCTTCCTTTTAGAGGG Total count: 2 OUT table: - ID lib_name - hsa-miR-520b-3p 2 - hsa-miR-520c-3p|0|-1|21M|21 2 + ID lib_name + hsa-miR-520b-3p 2 + hsa-miR-520c-3p|0|-1|21M|21|AAAGTGCTTCCTTTTAGAGGG 2 Example 2 | Different isomiRs @@ -1386,26 +1386,26 @@ Data: Contribution: 1/3 = 0.33 miRNA species: - Tag name: hsa-miR-526b-3p|1|-1|20M|20 + Tag name: hsa-miR-526b-3p|1|-1|20M|20|AAAGTGCTTCCTTTTAGAGG Type: isomiR - Table name: hsa-miR-526b-3p|1|-1|20M|20 + Table name: hsa-miR-526b-3p|1|-1|20M|20|AAAGTGCTTCCTTTTAGAGG Total count: 0.33 - Tag name: hsa-miR-520b-3p|0|-1|20M|20 + Tag name: hsa-miR-520b-3p|0|-1|20M|20|AAAGTGCTTCCTTTTAGAGG Type: isomiR - Table name: hsa-miR-520b-3p|0|-1|20M|20 + Table name: hsa-miR-520b-3p|0|-1|20M|20|AAAGTGCTTCCTTTTAGAGG Total count: 0.33 - Tag name: hsa-miR-520c-3p|0|-2|20M|20 + Tag name: hsa-miR-520c-3p|0|-2|20M|20|AAAGTGCTTCCTTTTAGAGG Type: isomiR - Table name: hsa-miR-520c-3p|0|-2|20M|20 + Table name: hsa-miR-520c-3p|0|-2|20M|20|AAAGTGCTTCCTTTTAGAGG Total count: 0.33 OUT table: - ID lib_name - hsa-miR-520b-3p|0|-1|20M|20 0.33 - hsa-miR-520c-3p|0|-2|20M|20 0.33 - hsa-miR-526b-3p|1|-1|20M|20 0.33 + ID lib_name + hsa-miR-520b-3p|0|-1|20M|20|AAAGTGCTTCCTTTTAGAGG 0.33 + hsa-miR-520c-3p|0|-2|20M|20|AAAGTGCTTCCTTTTAGAGG 0.33 + hsa-miR-526b-3p|1|-1|20M|20|AAAGTGCTTCCTTTTAGAGG 0.33 ``` @@ -1506,27 +1506,27 @@ Merge all the tables from the different libraries into a single one with a ```console IN library 1 - ID lib_1 - hsa-miR-524-5p 1 - hsa-miR-524-5p|0|0|22M|9G12 1 - hsa-miR-524-5p|0|0|22M|9G9C2 1 + ID lib_1 + hsa-miR-524-5p 1 + hsa-miR-524-5p|0|0|22M|9G12|CTACAAAGGTAAGCACTTTCTC 1 + hsa-miR-524-5p|0|0|22M|9G9C2|CTACAAAGGTAAGCACTTTATC 1 IN library 2 - ID lib_2 - hsa-miR-524-5p 1 - hsa-miR-1283 1 - hsa-miR-1283|-1|-2|21M|21 1 + ID lib_2 + hsa-miR-524-5p 1 + hsa-miR-1283 1 + hsa-miR-498-3p|0|0|23M|8T14|AAAGCACCACCAGAGCTTGAAGC 1 IN library 3 - ID lib_3 + ID lib_3 OUT table - ID lib_1 lib_2 lib_3 - hsa-miR-524-5p 1 1 NA - hsa-miR-524-5p|0|0|22M|9G12 1 NA NA - hsa-miR-524-5p|0|0|22M|9G9C2 1 NA NA - hsa-miR-1283 NA 1 NA - hsa-miR-1283|-1|-2|21M|21 NA 1 NA + ID lib_1 lib_2 lib_3 + hsa-miR-524-5p 1 1 NA + hsa-miR-524-5p|0|0|22M|9G12|CTACAAAGGTAAGCACTTTCTC 1 NA NA + hsa-miR-524-5p|0|0|22M|9G9C2|CTACAAAGGTAAGCACTTTATC 1 NA NA + hsa-miR-1283 NA 1 NA + hsa-miR-498-3p|0|0|23M|8T14|AAAGCACCACCAGAGCTTGAAGC NA 1 NA ``` diff --git a/scripts/iso_name_tagging.py b/scripts/iso_name_tagging.py index b2cb08b..84c50f0 100755 --- a/scripts/iso_name_tagging.py +++ b/scripts/iso_name_tagging.py @@ -4,28 +4,26 @@ """Add intersecting feature(s) into a SAM file as a tag. -Build new names for the intersecting features from a BED file and add them as a -tag to alignments in a SAM file using the format -FEATURE_ID|5p-shift|3p-shift|CIGAR|MD. If either the BED or the SAM file is -empty, only the SAM file header is returned. +Build new names for the intersecting features from a BED file and add them as +a tag to alignments in a SAM file using the format +FEATURE_ID|5'-shift|3'-shift|CIGAR|MD|READ_SEQ. EXPECTED INPUT FILES -The BED file must be the output a bedtools intersect call with -a being a GFF3 -file and -b a BAM file. If the GFF3 used in the bedtools intersect call has the -features start and end coordinates extended, the number of additional -nucleotides can be specified using the CLI option `--extension`. The SAM file -must contian only the reads that have an intersecting feature. +The BED file must be the output of a bedtools intersect call with `-a` being a +GFF3 file and `-b` a BAM file. The SAM file must only +contain alignments with an intersecting feature. If either the BED or the SAM +file is empty, only the SAM file header is returned. NAME CREATION and TAG ADDITION -For each alignment, the name of the the intersecting feature will follow the -format FEATURE_ID|5p-shift|3p-shift|CIGAR|MD. The CLI option `--id` specifies -the feature identifier to be used as FEATURE_ID from within the attributes -column in the BED file. The 5p-shift and the 3-p shift values are the -difference between the feature start and end coordinates and the alignment -start and end coordinates. If `--extension` is provided, the feature start -position are adjusted by adding the given value and subtracting it from the -end position. If both, the 5p-shift and the 3p-shift, are within the range -+/- extension + 1 the feature name is added to the alignment as the new tag +For each alignment, the name of the intersecting feature follows the +format FEATURE_ID|5'-shift|3'-shift|CIGAR|MD|READ_SEQ. The CLI option `--id` +specifies the feature identifier to be used as FEATURE_ID from the attributes +column in the BED file. The 5' and 3' shift values are the difference between +the alignment and its intersecting feature(s) start and end coordinates +respectively. If `--extension` is provided, features start and end positions +are adjusted by adding and subtracting respectively the given value. If +`--shift` is provided, and both, the 5' and 3'-end shifts, are within the +range +/- `--shift` the feature name is added to the alignment as the new tag "YW". Multiple intersecting feature names are separated by a semi-colon. EXAMPLES @@ -37,9 +35,15 @@ command: iso_name_tagging.py -b BED -s SAM new name: - hsa-miR-524-5p|0|0|11M3I11M|22 + "" out SAM record: - 13-1_1 0 19 44377 1 11M3I11M * 0 0 CTACAAAGGGAGGTAGCACTTTCTC * HI:i:0 MD:Z:22 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-524-5p|0|0|11M3I11M|22 + 13-1_1 0 19 44377 1 11M3I11M * 0 0 CTACAAAGGGAGGTAGCACTTTCTC * HI:i:0 MD:Z:22 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z: + explanation: + The aligned read has a length of 22 whereas the feature has a length of + 21. As both have the same starting position, there is a 1bp shift at + the 3' end. Given that no extension nor shift are provided in the + script call, no adjustments to the annotated coordinates are made and + no shifts are allowed. Hence, no tag is added. Example 2 in BED record: @@ -49,9 +53,14 @@ command: iso_name_tagging.py -b BED -s SAM new name: - "" + hsa-miR-1323|0|0|21M|21|TCAAAACTGAGGGGCATTTTC out SAM record: - 48-1_1 0 19 5338 255 21M * 0 0 TCAAAACTGAGGGGCATTTTC * MD:Z:21 NH:i:1 NM:i:0 YW:Z: + 48-1_1 0 19 5338 255 21M * 0 0 TCAAAACTGAGGGGCATTTTC * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-1323|0|0|21M|21|TCAAAACTGAGGGGCATTTTC + explanation: + The aligned read and the annotated featrue have the same start and end + positions. Given that no extension are provided in the script call, no + coordinates adjustments are made. And there is no shift on ether end, + the new tag is added. Example 3 in BED record: @@ -59,23 +68,35 @@ in SAM record: 48-1_1 0 19 5338 255 21M * 0 0 TCAAAACTGAGGGGCATTTTC * MD:Z:21 NH:i:1 NM:i:0 command: - iso_name_tagging.py -b BED -s SAM --extension 6 + iso_name_tagging.py -b BED -s SAM --extension 6 --shift 7 new name: - hsa-miR-1323|0|-1|21M|21 + hsa-miR-1323|0|0|21M|21|TCAAAACTGAGGGGCATTTTC out SAM record: - 48-1_1 0 19 5338 255 21M * 0 0 TCAAAACTGAGGGGCATTTTC * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-1323|0|-1|21M|21 + 48-1_1 0 19 5338 255 21M * 0 0 TCAAAACTGAGGGGCATTTTC * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-1323|0|0|21M|21|TCAAAACTGAGGGGCATTTTC + explanation: + The feature's start and end coordinates are adjusted by amount of bp + specified by the CLI argument `--extension`. The alignment start and + end positions differ from the adjusted miRNA ones by 6 bp. As there is + a +/- 7 bp shift allowed and both shifts are within this range, the new + tag is added. Example 4 in BED record: - 19 . miRNA 44377 44398 . + . ID=MIMAT0002849;Alias=MIMAT0002849;Name=hsa-miR-524-5p;Derives_from=MI0003160 19 44376 44398 13-1_1 1 + 22 + 19 . miRNA 44377 44404 . + . ID=MIMAT0002849;Alias=MIMAT0002849;Name=hsa-miR-524-5p;Derives_from=MI0003160 19 44376 44401 13-1_1 1 + 22 in SAM record: - 13-1_1 0 19 44377 1 11M3I11M * 0 0 CTACAAAGGGAGGTAGCACTTTCTC * HI:i:0 MD:Z:22 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 + 13-1_1 0 19 44377 1 11M3I11M * 0 0 CTACAAAGGGAGGTAGCACTTTCTC * HI:i:0 MD:Z:25 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 command: - iso_name_tagging.py -b BED -s SAM --id id + iso_name_tagging.py -b BED -s SAM --extension 6 --shift 7 --id id new name: - MIMAT0002849|0|0|11M3I11M|22 + MIMAT0002849|6|4|11M3I11M|25|CTACAAAGGGAGGTAGCACTTTCTC out SAM record: - 13-1_1 0 19 44377 1 11M3I11M * 0 0 CTACAAAGGGAGGTAGCACTTTCTC * HI:i:0 MD:Z:22 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:MIMAT0002849|0|0|11M3I11M|22 + 13-1_1 0 19 44377 1 11M3I11M * 0 0 CTACAAAGGGAGGTAGCACTTTCTC * HI:i:0 MD:Z:25 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:MIMAT0002849|6|4|11M3I11M|25|CTACAAAGGGAGGTAGCACTTTCTC + explanation: + The feature's start and end coordinates are adjusted by amount of bp + specified by the CLI argument `--extension`. The alignment start and + end positions differ from the adjusted miRNA ones by 6 bp. As there is + a +/- 7 bp shift allowed and both shifts are within this range, the new + tag is added. This time using the feature ID instead of the Name. """ # noqa: E501 # pylint: enable=line-too-long @@ -106,8 +127,8 @@ def parse_arguments(): "--bed", help=( "Path to the BED file. This file must be the output of " - " a bedtools intersect call with -a being a GFF3 file and" - " -b a BAM file." + " a bedtools intersect call with `-a` being a GFF3 file and" + " `-b` a BAM file." ), type=Path, required=True, @@ -129,6 +150,17 @@ def parse_arguments(): default=0, type=int, ) + parser.add_argument( + "-S", + "--shift", + help=( + "Absoulte difference in nucleotides allowed between the alignment" + " and its intersecting features' start and end coordinates." + " Default: %(default)d." + ), + default=0, + type=int, + ) parser.add_argument( "--id", help=( @@ -143,7 +175,7 @@ def parse_arguments(): def attributes_dictionary(attr: str) -> Dict[str, str]: - """Create attributes dicctionary.""" + """Create attributes dictionary.""" pairs = attr.split(";") if len(pairs[0].split("=")) == 2: @@ -161,18 +193,18 @@ def parse_intersect_output( ) -> Optional[Dict[Optional[str], list]]: """Parse intersect BED file. - Given a BED file generated by intersecting a GFF file (-a) with a BAM file + Given a BED file generated by intersecting a GFF3 file (-a) with a BAM file (-b) using bedtools intersect, create a dictionary where the alignment - names are the keys. The values are lists containing the feature name, - start position, and end position. The id argument specifies the feature - name to use, and the extension argument adjusts the feature coordinates by - adding the given value and subtracts it from the end position. If the BED - file is empty, `None` is returned. + names are the keys, and the values are lists containing the feature name, + the start and the end positions. The `ID` argument specifies the feature + name to use, and the `extension` argument adjusts the feature coordinates + by adding and subtracting the given value to the start and end positions + respectively. If the BED file is empty, `None` is returned. Args: intersect_file: Path to the intersect BED file. - id: + ID: ID used to identify the feature. Defaults to "name". extension: Number of nucleotides the start and end coordinates have to be @@ -205,12 +237,12 @@ def parse_intersect_output( for line in bedfile: fields = Fields(*line.strip().split("\t")) - miRNA_name = attributes_dictionary(fields.feat_attributes)[ID] - miRNA_start = int(fields.feat_start) + extension - miRNA_end = int(fields.feat_end) - extension + feat_name = attributes_dictionary(fields.feat_attributes)[ID] + feat_start = int(fields.feat_start) + extension + feat_end = int(fields.feat_end) - extension intersect_data[fields.read_name].append( - (miRNA_name, miRNA_start, miRNA_end) + (feat_name, feat_start, feat_end) ) if not intersect_data: @@ -220,56 +252,59 @@ def parse_intersect_output( def get_tags( - intersecting_mirna: list, alignment: pysam.AlignedSegment, extension: int + intersecting_feat: list, alignment: pysam.AlignedSegment, shift: int = 0 ) -> set: - """Get tag for alignment. - - Given an alignment and a list containing the feature name, start position, - and end position, create a list of strings to be added as a new tag to that - alignment. The string has the format: - feature-id|5p-shift|3p-shift|CIGAR|MD. The 5p-shift and 3p-shift are - calculated as a difference between the feature start/end position and the - alignment start/end position. If the start and end position of the - alignment differs at most by the extension argument value to the feature - start and end positions respectively, the name will be add to the final - list. + """Get alignment's new tag. + + Given an alignment and a list containing the name, the (extended) start and + end positions of all the intersecting features, create a set of strings + to be used as a new custom tag on that alignment. + Each string follows the format: + FEATURE_ID|5'-shift|3'-shift|CIGAR|MD|READ_SEQ + The 5' end shift is computed as the difference between the feature and the + alignment starting coordinate. Similarly, the 3' end shift is the result of + subtracting the feature's end position to the alignment's one. If both + shifts values are within the range +/- `shift`, the name is added to the + final list. Note that `pysam` assumes 0-base index therefore, the addition + of one base is required to compute the 5' end shift. Args: - intersecting_mirna: - list with the feature name, start and end positions + intersecting_feat: + list with the miRNA species name, start and end positions alignment: alignment to create the tag for - extension: - maximum number of nucleotides the alignment start and end positions - can differ from the feature to count it as an intersecting feature + shift: + value that sets the range in which both shifts have to be in to + create a new string for a particular feature Returns: tags: - set of strings containing the new tag + set of strings for each valid intersecting feature """ cigar = alignment.cigarstring + seq = alignment.query_sequence md = alignment.get_tag("MD") - limit = extension + 1 tags = [] - for miRNA_name, miRNA_start, miRNA_end in intersecting_mirna: - shift_5p = alignment.reference_start - miRNA_start + 1 - shift_3p = alignment.reference_end - miRNA_end - - if -limit < shift_5p < limit and -limit < shift_3p < limit: - tags.append(f"{miRNA_name}|{shift_5p}|{shift_3p}|{cigar}|{md}") + for feat_name, feat_start, feat_end in intersecting_feat: + shift_5 = alignment.reference_start - feat_start + 1 + shift_3 = alignment.reference_start + alignment.query_length - feat_end + if -shift <= shift_5 <= shift and -shift <= shift_3 <= shift: + tags.append(f"{feat_name}|{shift_5}|{shift_3}|{cigar}|{md}|{seq}") return set(tags) -def main(arguments) -> None: +def main(args) -> None: """Add intersecting feature(s) into a SAM file as a tag.""" intersect_data = parse_intersect_output( - arguments.bed, arguments.id, arguments.extension + intersect_file=args.bed, + ID=args.id, + extension=args.extension, ) - with pysam.AlignmentFile(arguments.sam, "r") as samfile: + with pysam.AlignmentFile(args.sam, "r") as samfile: sys.stdout.write(str(samfile.header)) if intersect_data is None: @@ -277,12 +312,12 @@ def main(arguments) -> None: for alignment in samfile: alignment_id = alignment.query_name - intersecting_miRNAs = intersect_data[alignment_id] + intersecting_feats = intersect_data[alignment_id] tags = get_tags( - intersecting_mirna=intersecting_miRNAs, + intersecting_feat=intersecting_feats, alignment=alignment, - extension=arguments.extension, + shift=args.shift, ) alignment.set_tag("YW", ";".join(tags)) @@ -290,5 +325,5 @@ def main(arguments) -> None: if __name__ == "__main__": - args = parse_arguments().parse_args() # pragma: no cover - main(args) # pragma: no cover + arguments = parse_arguments().parse_args() # pragma: no cover + main(arguments) # pragma: no cover diff --git a/scripts/mirna_quantification.py b/scripts/mirna_quantification.py index 8b44cfb..0d0def4 100755 --- a/scripts/mirna_quantification.py +++ b/scripts/mirna_quantification.py @@ -1,5 +1,7 @@ #!/usr/bin/env python +# pylint: disable=line-too-long + """Quantify miRNAs and corresponding isomiRs. Read the input SAM file, calculate the contribution sum of the intersecting @@ -9,7 +11,7 @@ covering the main modes. EXPECTED INPUT -The SAM file must contain only the alignments that interesct with canonical +The SAM file must contain only the alignments that intersect with canonical miRNAs and/or isomiRs. For each alignment, the intersecting feature name(s) must be stored in a tag. If the tag determined by the CLI argument `--tag` is empty, the alignment is ignored. In addition, the SAM file must be sorted by @@ -20,14 +22,15 @@ FEATURE NAME FORMAT The name of the intersecting feature(s) has to follow the format: -feat_name|5p-shift|3p-shift|CIGAR|MD. -For isomirs, the whole name is used. For canonical miRNAs, the `feat_name`. +FEAT_NAME|5p-SHIFT|3p-SHIFT|CIGAR|MD|READ_SEQ. +For isomiRs, the whole name is used. For canonical miRNAs, the `feat_name`. A feature is classified as canonical if the 5p and 3p shifts are both 0 and the CIGAR and MD strings are the same. If there are different features names -separated by a semi-colon, they are treated as a unique isomir name. For -example, the feature name 'feat_name_1|0|0|23M|23' would represent a canonical -miRNA and the feature names 'feat_name_2|0|0|22M|0A0A2T17' and -'feat_name_3|0|0|22M|22;feat_name_4|1|0|23M|17A3T0C0' would represent isomiRs. +separated by a semi-colon, they are treated as a unique isomiR name. For +example, the feature name 'feat_name_1|0|0|23M|23|read_seq' would represent +a canonical miRNA and the feature names 'feat_name_2|0|0|22M|0A0A2T17|read_seq' +and 'feat_name_3|0|0|22M|22|read_seq;feat_name_4|1|0|23M|17A3T0C0|read_seq' +would represent isomiRs. READ NAME FORMAT The read name must have one of the following formats: @@ -41,7 +44,7 @@ COUNT TABULATION The count for each feature is the sum of all the intersecting alignment's -contribution. The appropiate contribution is the ratio between the number of +contribution. The appropriate contribution is the ratio between the number of reads and the alignment's NH. The CLI flags `--collapsed` and `--nh` determine if these values are taken from the alignment's name. If `--collapsed` is not set, the number of reads is considered to be 1. If `--nh` is not set, the NH @@ -62,16 +65,16 @@ flags `--count`, `--len` and `--read-ids`. If `--count` is set, the output table will contain the number of best alignments for each feature. If `--len` is set, the output table will contain the read's length. If both `--count` and -`--len` are set, the count will always be followed by the read's lenght. If +`--len` are set, the count will always be followed by the read's length. If `--read-ids` is set, a semicolon-separated list of all alignment IDs that overlap with the feature will always be in the last column. EXAMPLES Example 1 - input: SAM with intersecting feature names in stored in the tag XN + input: SAM with intersecting feature names in the tag XN command: mirna_quantification.py SAM --tag XN output: hsa-miR-516b-5p 3.0 - hsa-miR-517-5p|-1|0|23M|22T 0.6000000000000001 + hsa-miR-517-5p|-1|0|23M|22T|ACCTCTAGATGGAAGCACTGTCG 0.6000000000000001 Example 2 input: SAM meeting the minimal characteristics @@ -82,39 +85,40 @@ Example 3 input: SAM meeting the minimal characteristics command: mirna_quantification.py SAM --mir-list isomir - output: hsa-miR-512-3p|0|1|23M|22C 1.6666666666666665 - hsa-miR-517-5p|-1|0|23M|22T 0.6000000000000001 + output: hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTAA 1.6666666666666665 + hsa-miR-517-5p|-1|0|23M|22T|ACCTCTAGATGGAAGCACTGTCG 0.6000000000000001 Example 4 input: SAM with read names following the format NAME-COUNT_NH command: mirna_quantification.py SAM --collpased --nh output: hsa-miR-516b-5p 3.0 - hsa-miR-517-5p|-1|0|23M|22T 0.6000000000000001 + hsa-miR-517-5p|-1|0|23M|22T|ACCTCTAGATGGAAGCACTGTCG 0.6000000000000001 Example 5 input: SAM with read names following the format NAME-COUNT command: mirna_quantification.py SAM --collapsed output: hsa-miR-516b-5p 3.0 - hsa-miR-517-5p|-1|0|23M|22T 0.6000000000000001 + hsa-miR-517-5p|-1|0|23M|22T|ACCTCTAGATGGAAGCACTGTCG 0.6000000000000001 Example 6 input: SAM with read names following the format NAME_NH command: mirna_quantification.py SAM --nh output: hsa-miR-516b-5p 3.0 - hsa-miR-517-5p|-1|0|23M|22T 0.6000000000000001 + hsa-miR-517-5p|-1|0|23M|22T|ACCTCTAGATGGAAGCACTGTCG 0.6000000000000001 Example 7 input: SAM with read names following the format NAME_NH command: mirna_quantification.py SAM --read-ids --nh --mir-list mirna output: hsa-miR-498-5p 4.333333333333333 270396_3 - hsa-miR-1323 12.0 673650_2;673650_2 + hsa-miR-1323 12.0 673650_2;906983_4 Example 8 input: SAM meeting the minimal characteristics command: mirna_quantification.py SAM --count --len --mir-list isomir - output: hsa-miR-512-3p|0|1|23M|22C0 4.333333333333333 6 23 - hsa-miR-512-3p|0|1|23M|3T18C0 12.0 8 19 -""" + output: hsa-miR-512-3p|0|1|23M|22C0|AAGTGCTGTCATAGCTGAGGTAA 4.333333333333333 6 23 + hsa-miR-512-3p|0|1|23M|3T18C0|AAGGGCTGTCATAGCTGAGGTAA 12.0 8 19 +""" # noqa: E501 +# pylint: enable=line-too-long import argparse from pathlib import Path @@ -183,12 +187,12 @@ def parse_arguments(): "--collapsed", help=( "Indicate that the SAM file has the reads collapsed by sequence." - "In that case, the SAM query names are expected to follow the " - "format NAME-COUNT where NAME is an aribitrary unique name and " - "COUNT is is the number of identical reads that were collapsed " - "i.e my_query_name-13. The required naming format is produced, " - "e.g., by the 'fastx_collapser' tool of the " - "FASTX-Toolkit: http://hannonlab.cshl.edu/fastx_toolkit/" + " In that case, the SAM query names are expected to follow the" + " format NAME-COUNT where NAME is an aribitrary unique name and" + " COUNT is is the number of identical reads that were collapsed" + " i.e my_query_name-13. The required naming format is produced," + " e.g., by the 'fastx_collapser' tool of the" + " FASTX-Toolkit: http://hannonlab.cshl.edu/fastx_toolkit/" " Default: %(default)s." ), action="store_true", @@ -227,8 +231,9 @@ def parse_arguments(): parser.add_argument( "--read-ids", help=( - "If set, the read IDs that belong to each miRNA are included in " - "the output table separated by a semi-colon. Default: %(default)s." + "If set, the read IDs that belong to each miRNA are included in" + " the output table separated by a semi-colon." + " Default: %(default)s." ), action="store_true", default=False, @@ -291,15 +296,13 @@ def collapsed_contribution(aln: pysam.AlignedSegment) -> float: if coll := re.search(r"\d+$", name): collapsed = float(coll.group()) - except AttributeError: - sys.stdout.write( - f"Invalid query name: '{aln.query_name}'.\n" - + "Option --collapsed specified but query name does" - + " not include the number of collapsed sequences.\n" - + "Check SAM file consistency and CLI options" - + " --collapsed and --nh.\n" - ) - raise + except AttributeError as atterr: + raise AttributeError( + f'Invalid query name: "{aln.query_name}".\n' + f"Option --collapsed specified but query name does not include" + f" the number of collapsed sequences.\nCheck SAM file consistency" + f" and CLI options --collapsed and --nh." + ) from atterr try: nh_value = float(aln.get_tag("NH")) @@ -332,15 +335,12 @@ def nh_contribution(aln: pysam.AlignedSegment) -> float: return 1 / nh_val - except AttributeError: - sys.stdout.write( - f"Invalid query name: '{aln.query_name}'.\n" - + "Option --nh specified but query name does" - + " not include NH.\n" - + "Check SAM file consistency and CLI options" - + " --collapsed and --nh.\n" - ) - raise + except AttributeError as atterr: + raise AttributeError( + f'Invalid query name: "{aln.query_name}".\n' + f"Option --nh specified but query name does not include NH.\n" + f"Check SAM file consistency and CLI options --collapsed and --nh." + ) from atterr def contribution(aln: pysam.AlignedSegment) -> float: @@ -374,7 +374,8 @@ def get_name(pre_name: str) -> list[str]: Args: pre_name: - string with the format feat_name|5p-shift|3p-shift|CIGAR|MD + string with the format + FEAT_NAME|5p-SHIFT|3p-SHIFT|CIGAR|MD|READ_SEQ Returns: list with the species name to be found in the final table and its type @@ -400,11 +401,11 @@ def write_output( mirna.write("") -def main(arguments) -> None: +def main(args) -> None: """Quantify miRNAs and corresponding isomiRs.""" - outdir = Path(arguments.outdir) + outdir = Path(args.outdir) outdir.mkdir(parents=True, exist_ok=True) - outfile = outdir / f"mirna_counts_{arguments.lib}" + outfile = outdir / f"mirna_counts_{args.lib}" contribution_type = { (True, True): collapsed_nh_contribution, @@ -413,12 +414,12 @@ def main(arguments) -> None: (False, False): contribution, } - get_contribution = contribution_type[arguments.collapsed, arguments.nh] + get_contribution = contribution_type[args.collapsed, args.nh] - with pysam.AlignmentFile(arguments.samfile, "r") as samfile: + with pysam.AlignmentFile(args.samfile, "r") as samfile: try: alignment = next(samfile) - current_species = alignment.get_tag(arguments.tag) + current_species = alignment.get_tag(args.tag) if current_species: read_ID = [str(alignment.query_name)] count = get_contribution(alignment) @@ -428,7 +429,7 @@ def main(arguments) -> None: write_output( name="", species=[], - mir_list=arguments.mir_list, + mir_list=args.mir_list, mirna_out=outfile, ) @@ -436,14 +437,14 @@ def main(arguments) -> None: for alignment in samfile: if current_species == "": - current_species = alignment.get_tag(arguments.tag) + current_species = alignment.get_tag(args.tag) count = get_contribution(alignment) alns_count = 1 read_ID = [str(alignment.query_name)] continue - if current_species == alignment.get_tag(arguments.tag): + if current_species == alignment.get_tag(args.tag): count += get_contribution(alignment) alns_count += 1 read_ID.append(str(alignment.query_name)) @@ -452,21 +453,21 @@ def main(arguments) -> None: name = get_name(str(current_species)) species = [name[1], str(count)] - if arguments.count: + if args.count: species.append(str(alns_count)) - if arguments.len: + if args.len: species.append(str(alignment.query_alignment_length)) - if arguments.read_ids: + if args.read_ids: species.append(";".join(read_ID)) write_output( name=name[0], species=species, - mir_list=arguments.mir_list, + mir_list=args.mir_list, mirna_out=outfile, ) - current_species = alignment.get_tag(arguments.tag) + current_species = alignment.get_tag(args.tag) count = get_contribution(alignment) alns_count = 1 read_ID = [str(alignment.query_name)] @@ -474,21 +475,21 @@ def main(arguments) -> None: name = get_name(str(current_species)) species = [name[1], str(count)] - if arguments.count: + if args.count: species.append(str(alns_count)) - if arguments.len: + if args.len: species.append(str(alignment.query_alignment_length)) - if arguments.read_ids: + if args.read_ids: species.append(";".join(read_ID)) write_output( name=name[0], species=species, - mir_list=arguments.mir_list, + mir_list=args.mir_list, mirna_out=outfile, ) if __name__ == "__main__": - args = parse_arguments().parse_args() # pragma: no cover - main(args) # pragma: no cover + arguments = parse_arguments().parse_args() # pragma: no cover + main(arguments) # pragma: no cover diff --git a/scripts/tests/files/in_aln_tag.sam b/scripts/tests/files/in_aln_tag.sam index cdac5ec..52072be 100644 --- a/scripts/tests/files/in_aln_tag.sam +++ b/scripts/tests/files/in_aln_tag.sam @@ -13,256 +13,256 @@ 445515-1_1 0 19 53506 1 9M1D7M * 0 0 AAGAAAGTGTTCTCTA * HI:i:0 MD:Z:9^C6T0 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z: 138559-2_2 256 19 75885 1 12M1D2M1D2M1I6M * 0 0 CCCTCTAGAGGAGCCTGTTCTGT * MD:Z:12^A2^A8 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 YW:Z: 641705-1_1 0 19 121288 1 9M1I6M * 0 0 TGGAAAGTGGCTGAGA * HI:i:0 MD:Z:12C2 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z: -709268-1_1 0 19 5338 255 21M * 0 0 TCAAAACTGAGGGGCATTTTC * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-1323|0|-1|21M|21 -528546-1_1 0 19 5338 255 22M * 0 0 TCAAAACTGAGGGGCATTTTCT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-1323|0|0|22M|22 -270342-1_1 0 19 121040 255 20M * 0 0 ACTCAAACTGTGGGGGCACT * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-371a-5p|0|0|20M|20 -840419-1_1 0 19 121040 1 23M * 0 0 ACTCAAACTGTGGGGGCCCTTAG * HI:i:0 MD:Z:17A3T0C0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-371a-5p|0|3|23M|17A3T0C0 -120522-2_1 16 19 121038 255 22M * 0 0 GCACTCAAACTGTGGGGGCACT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-371b-3p|0|-1|22M|22 -299969-1_1 0 19 121291 1 22M * 0 0 CGAGCGCTGCGACATTTGAGCG * HI:i:0 MD:Z:0A0A2T17 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-372-3p|0|-1|22M|0A0A2T17 -67825-4_1 0 19 121291 255 22M * 0 0 AAAGTGCTGCGACATTTGAGCG * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-372-3p|0|-1|22M|22 -90583-3_1 0 19 121291 255 22M * 0 0 AAATTGCTGCGACATTTGAGCG * MD:Z:3G18 NH:i:1 NM:i:1 YW:Z:hsa-miR-372-3p|0|-1|22M|3G18 -629861-1_1 0 19 121291 1 23M * 0 0 AGAGTGCTGCGACATTTGAGCGA * HI:i:0 MD:Z:1A20T0 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-372-3p|0|0|23M|1A20T0 -120521-2_1 0 19 121291 255 23M * 0 0 AAAGTGCTGCGACATTTGAGCGA * MD:Z:22T NH:i:1 NM:i:1 YW:Z:hsa-miR-372-3p|0|0|23M|22T -739110-1_1 0 19 121291 255 23M * 0 0 AAAGTGCTGCGACATTTGAGCGT * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-372-3p|0|0|23M|23 -270338-1_1 0 19 121291 255 23M * 0 0 AAATTGCTGCGACATTTGAGCGT * MD:Z:3G19 NH:i:1 NM:i:1 YW:Z:hsa-miR-372-3p|0|0|23M|3G19 -267649-1_1 0 19 121292 255 21M1I1M * 0 0 AAGTGCTGCGACATTTGAGCGAT * MD:Z:23 NH:i:1 NM:i:1 YW:Z:hsa-miR-372-3p|1|0|21M1I1M|23 -313132-1_1 0 19 121292 255 22M * 0 0 AAGTGCTGCGACATTTGAGCGT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-372-3p|1|0|22M|22 -270337-1_1 0 19 121292 1 4M1I18M * 0 0 AACTTGCTGCGACATTTGAGCGT * HI:i:0 MD:Z:2G19 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-372-3p|1|0|4M1I18M|2G19 -188149-2_1 0 19 122108 255 23M * 0 0 GAAGTGCTTCGATTTTGGGGTGT * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-373-3p|0|0|23M|23 -270393-1_1 0 19 7590 255 23M * 0 0 TTTCAAGCCAGGGGGCGTTTTTC * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-498-5p|0|0|23M|23 -610105-1_2 256 19 87 1 3M1I17M * 0 0 GAACAGTGCTGTGATAACTGA * MD:Z:11C3G4 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 YW:Z:hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4 -610105-1_2 0 19 2571 1 3M1I17M * 0 0 GAACAGTGCTGTGATAACTGA * MD:Z:11C3G4 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 YW:Z:hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4 -645839-1_3 0 19 89 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGA * MD:Z:20T NM:i:1 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|-1|21M|20T -645839-1_3 0 19 2573 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGA * MD:Z:20T NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|-1|21M|20T -645839-1_3 256 19 89 1 21M * 0 0 AAGTGCTGTCATAGCTGAGGA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|-1|21M|20T0 -67830-4_3 256 19 89 1 21M * 0 0 AAGTGCTGTCATAGCTGAGGT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|-1|21M|21 -67830-4_3 0 19 89 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|-1|21M|21 -67830-4_3 0 19 2573 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|-1|21M|21 -535182-1_3 256 19 89 1 21M * 0 0 AAGTGCTTTCATAGCTGAGGT * MD:Z:7G13 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|-1|21M|7G13 -535182-1_3 0 19 89 255 21M * 0 0 AAGTGCTTTCATAGCTGAGGT * MD:Z:7G13 NM:i:1 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|-1|21M|7G13 -535182-1_3 0 19 2573 255 21M * 0 0 AAGTGCTTTCATAGCTGAGGT * MD:Z:7G13 NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|-1|21M|7G13 -766380-1_3 0 19 89 255 20M * 0 0 AAGTGCTGTCATCGCTGAGG * MD:Z:12A7 NM:i:1 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|-2|20M|12A7 -766380-1_3 256 19 89 1 20M * 0 0 AAGTGCTGTCATCGCTGAGG * MD:Z:12A7 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|-2|20M|12A7 -766380-1_3 0 19 2573 255 20M * 0 0 AAGTGCTGTCATCGCTGAGG * MD:Z:12A7 NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|-2|20M|12A7 -67831-4_3 0 19 89 255 20M * 0 0 AAGTGCTGTCATAGCTGAGG * MD:Z:20 NM:i:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|-2|20M|20 -67831-4_3 256 19 89 1 20M * 0 0 AAGTGCTGTCATAGCTGAGG * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|-2|20M|20 -67831-4_3 0 19 2573 255 20M * 0 0 AAGTGCTGTCATAGCTGAGG * MD:Z:20 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|-2|20M|20 -270395-1_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATCGCTGAGGTC * MD:Z:12A9 NM:i:1 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|0|22M|12A9 -270395-1_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATCGCTGAGGTC * MD:Z:12A9 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|0|22M|12A9 -270395-1_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATCGCTGAGGTC * MD:Z:12A9 NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|0|22M|12A9 -773136-1_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATAGCTGCGGTC * MD:Z:17A4 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|0|22M|17A4 -773136-1_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATAGCTGCGGTC * MD:Z:17A4 NM:i:1 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|0|22M|17A4 -773136-1_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATAGCTGCGGTC * MD:Z:17A4 NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|0|22M|17A4 -102065-3_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTT * MD:Z:21C NM:i:1 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|0|22M|21C -102065-3_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTT * MD:Z:21C NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|0|22M|21C -102065-3_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATAGCTGAGGTT * MD:Z:21C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|0|22M|21C0 -37896-9_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATAGCTGAGGTC * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|0|22M|22 -37896-9_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTC * MD:Z:22 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|0|22M|22 -37896-9_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTC * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|0|22M|22 -334943-1_2 256 19 89 1 23M * 0 0 AAGTGCTGTCATAGCTGAGGTAG * MD:Z:21C0C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 YW:Z:hsa-miR-512-3p|0|1|23M|21C0C0 -334943-1_2 0 19 2573 1 23M * 0 0 AAGTGCTGTCATAGCTGAGGTAG * MD:Z:21C0C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 YW:Z:hsa-miR-512-3p|0|1|23M|21C0C0 -270396-1_3 0 19 89 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCT * MD:Z:22C NM:i:1 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|1|23M|22C -270401-1_2 0 19 89 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCA * MD:Z:22C NM:i:1 NH:i:2 HI:i:1 YW:Z:hsa-miR-512-3p|0|1|23M|22C -270396-1_3 0 19 2573 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCT * MD:Z:22C NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|1|23M|22C -270401-1_2 0 19 2573 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCA * MD:Z:22C NM:i:1 NH:i:2 HI:i:2 YW:Z:hsa-miR-512-3p|0|1|23M|22C -270396-1_3 256 19 89 1 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCT * MD:Z:22C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|1|23M|22C0 -673650-1_2 256 19 89 1 23M * 0 0 AAGAGCTGTCATAGCTGAGGTCT * MD:Z:3T18C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 YW:Z:hsa-miR-512-3p|0|1|23M|3T18C0 -673650-1_2 0 19 2573 1 23M * 0 0 AAGAGCTGTCATAGCTGAGGTCT * MD:Z:3T18C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 YW:Z:hsa-miR-512-3p|0|1|23M|3T18C0 -150819-2_3 256 19 53 1 21M * 0 0 ACTCAGCCTTGAGGGCACTTT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-5p|1|-1|21M|21 -150819-2_3 0 19 53 255 21M * 0 0 ACTCAGCCTTGAGGGCACTTT * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-5p|1|-1|21M|21 -150819-2_3 0 19 2537 255 21M * 0 0 ACTCAGCCTTGAGGGCACTTT * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-5p|1|-1|21M|21 -270402-1_3 0 19 53 255 20M * 0 0 ACTCAGCCTTGAGGGCACTT * MD:Z:20 NM:i:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-5p|1|-2|20M|20 -270402-1_3 256 19 53 1 20M * 0 0 ACTCAGCCTTGAGGGCACTT * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-5p|1|-2|20M|20 -270402-1_3 0 19 2537 255 20M * 0 0 ACTCAGCCTTGAGGGCACTT * MD:Z:20 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-5p|1|-2|20M|20 -752875-1_3 256 19 53 1 22M * 0 0 ACTCAGCCTTGAGGGCACTTTC * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-5p|1|0|22M|22 -752875-1_3 0 19 53 255 22M * 0 0 ACTCAGCCTTGAGGGCACTTTC * MD:Z:22 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-5p|1|0|22M|22 -752875-1_3 0 19 2537 255 22M * 0 0 ACTCAGCCTTGAGGGCACTTTC * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-5p|1|0|22M|22 -369314-1_3 0 19 12413 255 21M * 0 0 GAGTGCCTTCTTTTGGAGCGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-515-3p|0|-1|21M|21 -369314-1_3 256 19 12413 1 21M * 0 0 GAGTGCCTTCTTTTGGAGCGT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-515-3p|0|-1|21M|21 -369314-1_3 0 19 18419 255 21M * 0 0 GAGTGCCTTCTTTTGGAGCGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-515-3p|0|-1|21M|21 -54840-6_3 0 19 90116 255 22M * 0 0 TTCTCGAGGAAAGAAGCACTTT * MD:Z:22 NM:i:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-516a-5p|0|-1|22M|22 -54840-6_3 256 19 90116 1 22M * 0 0 TTCTCGAGGAAAGAAGCACTTT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-516a-5p|0|-1|22M|22 -54840-6_3 0 19 94508 255 22M * 0 0 TTCTCGAGGAAAGAAGCACTTT * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-516a-5p|0|-1|22M|22 -423555-1_3 256 19 90117 1 21M * 0 0 TCTCGAGGAAAGAAGCACTTT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-516a-5p|1|-1|21M|21 -423555-1_3 0 19 90117 255 21M * 0 0 TCTCGAGGAAAGAAGCACTTT * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-516a-5p|1|-1|21M|21 -423555-1_3 0 19 94509 255 21M * 0 0 TCTCGAGGAAAGAAGCACTTT * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-516a-5p|1|-1|21M|21 -270365-1_3 0 19 58817 255 19M * 0 0 ATCTGGAGGTAAGAAGCAA * MD:Z:18C NM:i:1 NH:i:3 HI:i:2 YW:Z:hsa-miR-516b-5p|0|-3|19M|18C -270365-1_3 0 19 70220 255 19M * 0 0 ATCTGGAGGTAAGAAGCAA * MD:Z:18C NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-516b-5p|0|-3|19M|18C -270365-1_3 256 19 58817 1 19M * 0 0 ATCTGGAGGTAAGAAGCAA * MD:Z:18C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-516b-5p|0|-3|19M|18C0 -270366-1_3 256 19 58817 1 22M * 0 0 ATCTGGAGGTCAGAAGCACTTT * MD:Z:10A11 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-516b-5p|0|0|22M|10A11 -270366-1_3 0 19 58817 255 22M * 0 0 ATCTGGAGGTCAGAAGCACTTT * MD:Z:10A11 NM:i:1 NH:i:3 HI:i:2 YW:Z:hsa-miR-516b-5p|0|0|22M|10A11 -270366-1_3 0 19 70220 255 22M * 0 0 ATCTGGAGGTCAGAAGCACTTT * MD:Z:10A11 NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-516b-5p|0|0|22M|10A11 -86082-3_3 256 19 58817 1 22M * 0 0 ATCTGGAGGTAAGAAGCACTTT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-516b-5p|0|0|22M|22 -86082-3_3 0 19 58817 255 22M * 0 0 ATCTGGAGGTAAGAAGCACTTT * MD:Z:22 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-516b-5p|0|0|22M|22 -86082-3_3 0 19 70220 255 22M * 0 0 ATCTGGAGGTAAGAAGCACTTT * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-516b-5p|0|0|22M|22 -270359-1_5 0 19 45641 255 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T NM:i:1 NH:i:5 HI:i:1 YW:Z:hsa-miR-517-5p|-1|0|23M|22T -270359-1_5 0 19 54440 255 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T NM:i:1 NH:i:5 HI:i:2 YW:Z:hsa-miR-517-5p|-1|0|23M|22T -270359-1_5 0 19 74691 255 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T NM:i:1 NH:i:5 HI:i:4 YW:Z:hsa-miR-517-5p|-1|0|23M|22T -270359-1_5 256 19 54440 1 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:3 YW:Z:hsa-miR-517-5p|-1|0|23M|22T0 -270359-1_5 256 19 74691 1 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:5 YW:Z:hsa-miR-517-5p|-1|0|23M|22T0 -752904-1_3 0 19 45646 1 6M1D13M * 0 0 GAGATGAAGCACTGTCTGT * MD:Z:0T5^G13 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|0T5^G13 -752904-1_3 256 19 54445 1 6M1D13M * 0 0 GAGATGAAGCACTGTCTGT * MD:Z:0T5^G13 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|0T5^G13 -752904-1_3 256 19 74696 1 6M1D13M * 0 0 GAGATGAAGCACTGTCTGT * MD:Z:0T5^G13 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|0T5^G13 -105051-3_3 0 19 45646 1 6M1D13M * 0 0 TAGATGAAGCACTGTATGT * MD:Z:6^G9C3 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|6^G9C3 -105051-3_3 256 19 54445 1 6M1D13M * 0 0 TAGATGAAGCACTGTATGT * MD:Z:6^G9C3 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|6^G9C3 -105051-3_3 256 19 74696 1 6M1D13M * 0 0 TAGATGAAGCACTGTATGT * MD:Z:6^G9C3 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|6^G9C3 -120530-2_3 256 19 45681 1 21M * 0 0 ATCGTGCATCCCTTTAGAGTG * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-517a-3p|0|-1|21M|21 -120530-2_3 0 19 45681 255 21M * 0 0 ATCGTGCATCCCTTTAGAGTG * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-517a-3p|0|-1|21M|21 -67957-4_3 0 19 45681 255 22M * 0 0 ATCGTGCATCCCTTTAGAGTGT * MD:Z:22 NM:i:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-517a-3p|0|0|22M|22 -67957-4_3 256 19 45681 1 22M * 0 0 ATCGTGCATCCCTTTAGAGTGT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-517a-3p|0|0|22M|22 -120530-2_3 0 19 54478 255 21M * 0 0 ATCGTGCATCCCTTTAGAGTG * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-517b-3p|0|-1|21M|21 -67957-4_3 0 19 54478 255 22M * 0 0 ATCGTGCATCCCTTTAGAGTGT * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-517b-3p|0|0|22M|22 -447402-1_1 0 19 36147 255 22M * 0 0 CAAAGCGCTCCCCTTTAGAGGT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-518b|0|0|22M|22 -270377-1_1 0 19 42119 255 21M * 0 0 CTCTGGAGGGAAGCACTTTCT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-518c-5p|1|-1|21M|21 -751085-1_1 0 19 42119 255 20M * 0 0 CTCTGGAGGGAAGCACTTTA * MD:Z:19C NH:i:1 NM:i:1 YW:Z:hsa-miR-518c-5p|1|-2|20M|19C -270378-1_1 0 19 42119 255 22M * 0 0 CTCTGGAGGGAAGCACTTTCTG * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-518c-5p|1|0|22M|22 -120527-2_9 0 19 68252 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:8 YW:Z:hsa-miR-518d-5p|0|-1|21M|20T -120527-2_9 256 19 68252 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:9 YW:Z:hsa-miR-518d-5p|0|-1|21M|20T0 -95680-3_9 0 19 68252 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:8 YW:Z:hsa-miR-518d-5p|0|-1|21M|21 -95680-3_9 256 19 68252 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:9 YW:Z:hsa-miR-518d-5p|0|-1|21M|21 -270379-1_5 256 19 68252 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:5 YW:Z:hsa-miR-518d-5p|0|-1|21M|3T16T0 -139675-2_9 256 19 68252 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:8 YW:Z:hsa-miR-518d-5p|0|-2|20M|20 -139675-2_9 0 19 68252 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:9 YW:Z:hsa-miR-518d-5p|0|-2|20M|20 -531738-1_9 256 19 68252 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:8 YW:Z:hsa-miR-518d-5p|0|-3|19M|19 -531738-1_9 0 19 68252 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:9 YW:Z:hsa-miR-518d-5p|0|-3|19M|19 -270381-1_7 256 19 68252 1 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:7 HI:i:6 YW:Z:hsa-miR-518d-5p|0|0|22M|22 -270381-1_7 0 19 68252 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 NH:i:7 HI:i:7 YW:Z:hsa-miR-518d-5p|0|0|22M|22 -270360-1_1 0 19 63251 255 21M * 0 0 AAAGCGCTTCCCTTCAGAGTG * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-518e-3p|0|0|21M|21 -676180-1_6 0 19 63213 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:4 YW:Z:hsa-miR-518e-5p|0|-1|21M|19C0T0 -18915-24_11 0 19 63213 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:7 YW:Z:hsa-miR-518e-5p|0|-1|21M|21 -270361-1_11 0 19 63213 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:7 YW:Z:hsa-miR-518e-5p|0|-2|20M|19C -630277-1_11 0 19 63213 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:7 YW:Z:hsa-miR-518e-5p|0|-3|19M|19 -67687-4_11 0 19 63213 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:7 YW:Z:hsa-miR-518e-5p|0|0|22M|22 -84523-3_11 0 19 63213 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:7 YW:Z:hsa-miR-518e-5p|0|1|23M|23 -120527-2_9 0 19 33390 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:1 YW:Z:hsa-miR-518f-5p|0|-1|21M|20T -95680-3_9 0 19 33390 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:1 YW:Z:hsa-miR-518f-5p|0|-1|21M|21 -270379-1_5 0 19 33390 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:1 YW:Z:hsa-miR-518f-5p|0|-1|21M|3T16T0 -139675-2_9 0 19 33390 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:1 YW:Z:hsa-miR-518f-5p|0|-2|20M|20 -531738-1_9 0 19 33390 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:1 YW:Z:hsa-miR-518f-5p|0|-3|19M|19 -347693-1_1 0 19 33390 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTC * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-518f-5p|0|0|22M|22 -270348-1_3 0 19 85809 255 22M * 0 0 AAATTGCATCCTTTTAGAGTGT * MD:Z:3G18 NM:i:1 NH:i:3 HI:i:1 YW:Z:hsa-miR-519a-3p|0|0|22M|3G18 -270348-1_3 0 19 95757 255 22M * 0 0 AAATTGCATCCTTTTAGAGTGT * MD:Z:3G18 NM:i:1 NH:i:3 HI:i:2 YW:Z:hsa-miR-519a-3p|0|0|22M|3G18 -270348-1_3 256 19 95757 1 22M * 0 0 AAATTGCATCCTTTTAGAGTGT * MD:Z:3G18 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-519a-3p|0|0|22M|3G18 -270357-1_1 0 19 85770 255 22M * 0 0 ACTCTAGAGGGAAGCGCTTTCA * MD:Z:21T NH:i:1 NM:i:1 YW:Z:hsa-miR-519a-5p|-1|-1|22M|21T -58870-5_1 0 19 85770 255 22M * 0 0 ACTCTAGAGGGAAGCGCTTTCT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-519a-5p|-1|-1|22M|22 -270354-1_1 0 19 85770 255 20M * 0 0 ACTCTAGAGGGAAGCGCTTT * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-519a-5p|-1|-3|20M|20 -676180-1_6 256 19 85771 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:6 YW:Z:hsa-miR-519a-5p|0|-1|21M|19C0T0 -18915-24_11 0 19 85771 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:10 YW:Z:hsa-miR-519a-5p|0|-1|21M|21 -18915-24_11 256 19 85771 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 YW:Z:hsa-miR-519a-5p|0|-1|21M|21 -270361-1_11 0 19 85771 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:10 YW:Z:hsa-miR-519a-5p|0|-2|20M|19C -270361-1_11 256 19 85771 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 YW:Z:hsa-miR-519a-5p|0|-2|20M|19C0 -630277-1_11 0 19 85771 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:10 YW:Z:hsa-miR-519a-5p|0|-3|19M|19 -630277-1_11 256 19 85771 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 YW:Z:hsa-miR-519a-5p|0|-3|19M|19 -67687-4_11 256 19 85771 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:10 YW:Z:hsa-miR-519a-5p|0|0|22M|22 -67687-4_11 0 19 85771 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:11 YW:Z:hsa-miR-519a-5p|0|0|22M|22 -84523-3_11 0 19 85771 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:10 YW:Z:hsa-miR-519a-5p|0|1|23M|23 -84523-3_11 256 19 85771 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 YW:Z:hsa-miR-519a-5p|0|1|23M|23 -676180-1_6 256 19 28585 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:2 YW:Z:hsa-miR-519b-5p|0|-1|21M|19C0T0 -18915-24_11 256 19 28585 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:3 YW:Z:hsa-miR-519b-5p|0|-1|21M|21 -18915-24_11 0 19 28585 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:4 YW:Z:hsa-miR-519b-5p|0|-1|21M|21 -270361-1_11 0 19 28585 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:3 YW:Z:hsa-miR-519b-5p|0|-2|20M|19C -270361-1_11 256 19 28585 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:4 YW:Z:hsa-miR-519b-5p|0|-2|20M|19C0 -630277-1_11 256 19 28585 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:3 YW:Z:hsa-miR-519b-5p|0|-3|19M|19 -630277-1_11 0 19 28585 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:4 YW:Z:hsa-miR-519b-5p|0|-3|19M|19 -67687-4_11 256 19 28585 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:3 YW:Z:hsa-miR-519b-5p|0|0|22M|22 -67687-4_11 0 19 28585 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:4 YW:Z:hsa-miR-519b-5p|0|0|22M|22 -84523-3_11 0 19 28585 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:3 YW:Z:hsa-miR-519b-5p|0|1|23M|23 -84523-3_11 256 19 28585 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:4 YW:Z:hsa-miR-519b-5p|0|1|23M|23 -676180-1_6 256 19 19844 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:1 YW:Z:hsa-miR-519c-5p|0|-1|21M|19C0T0 -18915-24_11 0 19 19844 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:1 YW:Z:hsa-miR-519c-5p|0|-1|21M|21 -18915-24_11 256 19 19844 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:2 YW:Z:hsa-miR-519c-5p|0|-1|21M|21 -270361-1_11 0 19 19844 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:2 YW:Z:hsa-miR-519c-5p|0|-2|20M|19C -270361-1_11 256 19 19844 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:1 YW:Z:hsa-miR-519c-5p|0|-2|20M|19C0 -630277-1_11 0 19 19844 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:1 YW:Z:hsa-miR-519c-5p|0|-3|19M|19 -630277-1_11 256 19 19844 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:2 YW:Z:hsa-miR-519c-5p|0|-3|19M|19 -67687-4_11 0 19 19844 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:1 YW:Z:hsa-miR-519c-5p|0|0|22M|22 -67687-4_11 256 19 19844 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:2 YW:Z:hsa-miR-519c-5p|0|0|22M|22 -84523-3_11 256 19 19844 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:1 YW:Z:hsa-miR-519c-5p|0|1|23M|23 -84523-3_11 0 19 19844 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:2 YW:Z:hsa-miR-519c-5p|0|1|23M|23 -270371-1_1 0 19 46760 255 21M * 0 0 CAAAGTGCCTCCCTTTAGAGT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-519d-3p|0|-1|21M|21 -153079-2_1 0 19 46760 255 20M * 0 0 CAAAGTGCCTCCCTTTAGAG * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-519d-3p|0|-2|20M|20 -67829-4_1 0 19 24293 255 22M * 0 0 AAAGTGCTTCCCTTTGGACTGT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-520a-3p|0|0|22M|22 -655140-1_1 0 19 24293 255 22M * 0 0 AAATTGCTTCCCTTTGGACTGT * MD:Z:3G18 NH:i:1 NM:i:1 YW:Z:hsa-miR-520a-3p|0|0|22M|3G18 -485300-1_1 0 19 24293 255 23M * 0 0 AAAGTGCTTCCCTTTGGACTGTA * MD:Z:22T NH:i:1 NM:i:1 YW:Z:hsa-miR-520a-3p|0|1|23M|22T -729311-1_1 0 19 24255 1 21M * 0 0 CTCCAGAGGGAAGTACTTTGA * HI:i:0 MD:Z:19C0T0 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|0|21M|19C0T0 -720817-1_1 0 19 24255 255 21M * 0 0 CTCCAGAGGGAAGTACTTTCG * MD:Z:20T NM:i:1 NH:i:1 HI:i:1 YW:Z:hsa-miR-520a-5p|0|0|21M|20T -120535-2_1 0 19 24255 255 21M * 0 0 CTCCAGAGGGAAGTACTTTCT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-520a-5p|0|0|21M|21 -228043-1_1 0 19 24255 1 19M1D2M * 0 0 CTCCAGAGGGAAGTACTTTAG * HI:i:0 MD:Z:19^C0T1 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1 -609803-1_1 0 19 24255 1 19M1I3M * 0 0 CTCCAGAGGGAAGTACTTTGAAG * HI:i:0 MD:Z:19C0T1 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|1|19M1I3M|19C0T1 -101076-3_1 0 19 24255 1 19M1D3M * 0 0 CTCCAGAGGGAAGTACTTTAGA * HI:i:0 MD:Z:19^C0T1T0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0 -127441-2_1 0 19 24255 1 19M1D3M * 0 0 CTCCAGAGGGAAGTACTTTTAA * HI:i:0 MD:Z:19^C1G0T0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0 -103161-3_1 0 19 24255 1 20M1D2M * 0 0 CTCCAGAGGGAAGTACTTTCGA * HI:i:0 MD:Z:20^T1T0 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0 -478794-1_1 0 19 24255 1 23M * 0 0 CTCCAGAGGGAAGTACTTTAAGA * HI:i:0 MD:Z:19C0T1T0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|2|23M|19C0T1T0 -744127-1_5 0 19 34626 255 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 NH:i:5 HI:i:2 YW:Z:hsa-miR-520b-3p|-1|-1|21M|21 -744127-1_5 256 19 34626 1 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:3 YW:Z:hsa-miR-520b-3p|-1|-1|21M|21 -120532-2_3 0 19 34627 255 22M * 0 0 AAAGTGCTTCCTTTTAGAGGGT * MD:Z:22 NM:i:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-520b-3p|0|1|22M|22 -744127-1_5 0 19 40865 255 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 NH:i:5 HI:i:4 YW:Z:hsa-miR-520c-3p|-1|-2|21M|21 -744127-1_5 256 19 40865 1 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:5 YW:Z:hsa-miR-520c-3p|-1|-2|21M|21 -120532-2_3 256 19 40866 1 22M * 0 0 AAAGTGCTTCCTTTTAGAGGGT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-520c-3p|0|0|22M|22 -120532-2_3 0 19 40866 255 22M * 0 0 AAAGTGCTTCCTTTTAGAGGGT * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-520c-3p|0|0|22M|22 -120527-2_9 0 19 40828 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:4 YW:Z:hsa-miR-520c-5p|0|-1|21M|20T -120527-2_9 256 19 40828 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:5 YW:Z:hsa-miR-520c-5p|0|-1|21M|20T0 -95680-3_9 256 19 40828 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:4 YW:Z:hsa-miR-520c-5p|0|-1|21M|21 -95680-3_9 0 19 40828 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:5 YW:Z:hsa-miR-520c-5p|0|-1|21M|21 -270379-1_5 256 19 40828 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:3 YW:Z:hsa-miR-520c-5p|0|-1|21M|3T16T0 -139675-2_9 256 19 40828 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:4 YW:Z:hsa-miR-520c-5p|0|-2|20M|20 -139675-2_9 0 19 40828 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:5 YW:Z:hsa-miR-520c-5p|0|-2|20M|20 -531738-1_9 256 19 40828 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:4 YW:Z:hsa-miR-520c-5p|0|-3|19M|19 -531738-1_9 0 19 40828 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:5 YW:Z:hsa-miR-520c-5p|0|-3|19M|19 -270381-1_7 256 19 40828 1 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:7 HI:i:3 YW:Z:hsa-miR-520c-5p|0|0|22M|22 -270381-1_7 0 19 40828 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 NH:i:7 HI:i:4 YW:Z:hsa-miR-520c-5p|0|0|22M|22 -361022-1_1 0 19 9124 255 21M * 0 0 AAAGTGCTTCCTTTTTGAGGG * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-520e-3p|0|0|21M|21 -772976-1_1 0 19 9089 1 7M1I9M * 0 0 AAAATGGGAAGCAGTTT * HI:i:0 MD:Z:2G13 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520e-5p|3|-3|7M1I9M|2G13 -270368-1_3 0 19 55581 255 21M * 0 0 CAAAGTGCTTCCCTTTAGAGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-520g-3p|1|-2|21M|21 -270369-1_1 0 19 55581 255 23M * 0 0 CAAAGTGCTTCCCTTTAGAGTGT * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-520g-3p|1|0|23M|23 -138559-2_2 0 19 55539 1 12M1D2M1D2M1I6M * 0 0 CCCTCTAGAGGAGCCTGTTCTGT * MD:Z:12^A2^A8 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 YW:Z:hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8 -270368-1_3 0 19 75927 255 21M * 0 0 CAAAGTGCTTCCCTTTAGAGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-520h|1|0|21M|21 -270368-1_3 256 19 75927 1 21M * 0 0 CAAAGTGCTTCCCTTTAGAGT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-520h|1|0|21M|21 -270358-1_1 0 19 84624 1 22M * 0 0 AGAATGGTTCCCTTTAGAGTGT * MD:Z:1A20 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:1 HI:i:1 YW:Z:hsa-miR-522-3p|0|0|22M|1A20 -676180-1_6 256 19 84586 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:5 YW:Z:hsa-miR-522-5p|0|-1|21M|19C0T0 -18915-24_11 0 19 84586 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:8 YW:Z:hsa-miR-522-5p|0|-1|21M|21 -18915-24_11 256 19 84586 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:9 YW:Z:hsa-miR-522-5p|0|-1|21M|21 -270361-1_11 0 19 84586 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:9 YW:Z:hsa-miR-522-5p|0|-2|20M|19C -270361-1_11 256 19 84586 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:8 YW:Z:hsa-miR-522-5p|0|-2|20M|19C0 -630277-1_11 256 19 84586 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:8 YW:Z:hsa-miR-522-5p|0|-3|19M|19 -630277-1_11 0 19 84586 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:9 YW:Z:hsa-miR-522-5p|0|-3|19M|19 -67687-4_11 0 19 84586 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:8 YW:Z:hsa-miR-522-5p|0|0|22M|22 -67687-4_11 256 19 84586 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:9 YW:Z:hsa-miR-522-5p|0|0|22M|22 -84523-3_11 256 19 84586 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:8 YW:Z:hsa-miR-522-5p|0|1|23M|23 -84523-3_11 0 19 84586 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:9 YW:Z:hsa-miR-522-5p|0|1|23M|23 -676180-1_6 256 19 31760 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:3 YW:Z:hsa-miR-523-5p|0|-1|21M|19C0T0 -18915-24_11 256 19 31760 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 YW:Z:hsa-miR-523-5p|0|-1|21M|21 -18915-24_11 0 19 31760 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:6 YW:Z:hsa-miR-523-5p|0|-1|21M|21 -270361-1_11 0 19 31760 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:6 YW:Z:hsa-miR-523-5p|0|-2|20M|19C -270361-1_11 256 19 31760 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 YW:Z:hsa-miR-523-5p|0|-2|20M|19C0 -630277-1_11 256 19 31760 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 YW:Z:hsa-miR-523-5p|0|-3|19M|19 -630277-1_11 0 19 31760 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:6 YW:Z:hsa-miR-523-5p|0|-3|19M|19 -67687-4_11 256 19 31760 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 YW:Z:hsa-miR-523-5p|0|0|22M|22 -67687-4_11 0 19 31760 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:6 YW:Z:hsa-miR-523-5p|0|0|22M|22 -84523-3_11 0 19 31760 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:5 YW:Z:hsa-miR-523-5p|0|1|23M|23 -84523-3_11 256 19 31760 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:6 YW:Z:hsa-miR-523-5p|0|1|23M|23 -270375-1_1 0 19 44377 255 21M * 0 0 CTACAAAGGGAAGCACTTTCT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-524-5p|0|-1|21M|21 -270376-1_1 0 19 44377 255 20M * 0 0 CTACAAAGGGAAGCACTTTC * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-524-5p|0|-2|20M|20 -57516-5_1 0 19 30907 255 20M * 0 0 CTCCAGAGGGATGCACTTTC * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-525-5p|0|-1|20M|20 -102026-3_1 0 19 30907 255 21M * 0 0 CTCCAGAGGGATGCACTTTCT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-525-5p|0|0|21M|21 -120527-2_9 0 19 39626 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:3 YW:Z:hsa-miR-526a-5p|0|-1|21M|20T -120527-2_9 0 19 60288 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:7 YW:Z:hsa-miR-526a-5p|0|-1|21M|20T -120527-2_9 256 19 39626 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:2 YW:Z:hsa-miR-526a-5p|0|-1|21M|20T0 -120527-2_9 256 19 60288 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:6 YW:Z:hsa-miR-526a-5p|0|-1|21M|20T0 -95680-3_9 256 19 39626 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:2 YW:Z:hsa-miR-526a-5p|0|-1|21M|21 -95680-3_9 0 19 39626 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:3 YW:Z:hsa-miR-526a-5p|0|-1|21M|21 -95680-3_9 256 19 60288 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:6 YW:Z:hsa-miR-526a-5p|0|-1|21M|21 -95680-3_9 0 19 60288 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:7 YW:Z:hsa-miR-526a-5p|0|-1|21M|21 -270379-1_5 256 19 39626 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:2 YW:Z:hsa-miR-526a-5p|0|-1|21M|3T16T0 -270379-1_5 256 19 60288 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:4 YW:Z:hsa-miR-526a-5p|0|-1|21M|3T16T0 -139675-2_9 0 19 39626 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:2 YW:Z:hsa-miR-526a-5p|0|-2|20M|20 -139675-2_9 256 19 39626 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:3 YW:Z:hsa-miR-526a-5p|0|-2|20M|20 -139675-2_9 0 19 60288 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:6 YW:Z:hsa-miR-526a-5p|0|-2|20M|20 -139675-2_9 256 19 60288 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:7 YW:Z:hsa-miR-526a-5p|0|-2|20M|20 -531738-1_9 0 19 39626 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:2 YW:Z:hsa-miR-526a-5p|0|-3|19M|19 -531738-1_9 256 19 39626 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:3 YW:Z:hsa-miR-526a-5p|0|-3|19M|19 -531738-1_9 0 19 60288 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:6 YW:Z:hsa-miR-526a-5p|0|-3|19M|19 -531738-1_9 256 19 60288 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:7 YW:Z:hsa-miR-526a-5p|0|-3|19M|19 -270381-1_7 0 19 39626 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 NH:i:7 HI:i:1 YW:Z:hsa-miR-526a-5p|0|0|22M|22 -270381-1_7 256 19 39626 1 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:7 HI:i:2 YW:Z:hsa-miR-526a-5p|0|0|22M|22 -270381-1_7 0 19 60288 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 NH:i:7 HI:i:5 YW:Z:hsa-miR-526a-5p|0|0|22M|22 +709268-1_1 0 19 5338 255 21M * 0 0 TCAAAACTGAGGGGCATTTTC * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-1323|0|-1|21M|21|TCAAAACTGAGGGGCATTTTC +528546-1_1 0 19 5338 255 22M * 0 0 TCAAAACTGAGGGGCATTTTCT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-1323|0|0|22M|22|TCAAAACTGAGGGGCATTTTCT +270342-1_1 0 19 121040 255 20M * 0 0 ACTCAAACTGTGGGGGCACT * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-371a-5p|0|0|20M|20|ACTCAAACTGTGGGGGCACT +840419-1_1 0 19 121040 1 23M * 0 0 ACTCAAACTGTGGGGGCCCTTAG * HI:i:0 MD:Z:17A3T0C0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-371a-5p|0|3|23M|17A3T0C0|ACTCAAACTGTGGGGGCACTTAG +120522-2_1 16 19 121038 255 22M * 0 0 GCACTCAAACTGTGGGGGCACT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-371b-3p|0|-1|22M|22|GCACTCAAACTGTGGGGGCACT +299969-1_1 0 19 121291 1 22M * 0 0 CGAGCGCTGCGACATTTGAGCG * HI:i:0 MD:Z:0A0A2T17 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-372-3p|0|-1|22M|0A0A2T17|CGAGCGCTGCGACATTTGAGCG +67825-4_1 0 19 121291 255 22M * 0 0 AAAGTGCTGCGACATTTGAGCG * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-372-3p|0|-1|22M|22|AAAGTGCTGCGACATTTGAGCG +90583-3_1 0 19 121291 255 22M * 0 0 AAATTGCTGCGACATTTGAGCG * MD:Z:3G18 NH:i:1 NM:i:1 YW:Z:hsa-miR-372-3p|0|-1|22M|3G18|AAATTGCTGCGACATTTGAGCG +629861-1_1 0 19 121291 1 23M * 0 0 AGAGTGCTGCGACATTTGAGCGA * HI:i:0 MD:Z:1A20T0 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-372-3p|0|0|23M|1A20T0|AGAGTGCTGCGACATTTGAGCGA +120521-2_1 0 19 121291 255 23M * 0 0 AAAGTGCTGCGACATTTGAGCGA * MD:Z:22T NH:i:1 NM:i:1 YW:Z:hsa-miR-372-3p|0|0|23M|22T|AAAGTGCTGCGACATTTGAGCGA +739110-1_1 0 19 121291 255 23M * 0 0 AAAGTGCTGCGACATTTGAGCGT * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-372-3p|0|0|23M|23|AAAGTGCTGCGACATTTGAGCGT +270338-1_1 0 19 121291 255 23M * 0 0 AAATTGCTGCGACATTTGAGCGT * MD:Z:3G19 NH:i:1 NM:i:1 YW:Z:hsa-miR-372-3p|0|0|23M|3G19|AAATTGCTGCGACATTTGAGCGT +267649-1_1 0 19 121292 255 21M1I1M * 0 0 AAGTGCTGCGACATTTGAGCGAT * MD:Z:23 NH:i:1 NM:i:1 YW:Z:hsa-miR-372-3p|1|0|21M1I1M|23|AAGTGCTGCGACATTTGAGCGAT +313132-1_1 0 19 121292 255 22M * 0 0 AAGTGCTGCGACATTTGAGCGT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-372-3p|1|0|22M|22|AAGTGCTGCGACATTTGAGCGT +270337-1_1 0 19 121292 1 4M1I18M * 0 0 AACTTGCTGCGACATTTGAGCGT * HI:i:0 MD:Z:2G19 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-372-3p|1|0|4M1I18M|2G19|AACTTGCTGCGACATTTGAGCGT +188149-2_1 0 19 122108 255 23M * 0 0 GAAGTGCTTCGATTTTGGGGTGT * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-373-3p|0|0|23M|23|GAAGTGCTTCGATTTTGGGGTGT +270393-1_1 0 19 7590 255 23M * 0 0 TTTCAAGCCAGGGGGCGTTTTTC * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-498-5p|0|0|23M|23|TTTCAAGCCAGGGGGCGTTTTTC +610105-1_2 256 19 87 1 3M1I17M * 0 0 GAACAGTGCTGTGATAACTGA * MD:Z:11C3G4 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 YW:Z:hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4|GAACAGTGCTGTGATAACTGA +610105-1_2 0 19 2571 1 3M1I17M * 0 0 GAACAGTGCTGTGATAACTGA * MD:Z:11C3G4 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 YW:Z:hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4|GAACAGTGCTGTGATAACTGA +645839-1_3 0 19 89 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGA * MD:Z:20T NM:i:1 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|-1|21M|20T|AAGTGCTGTCATAGCTGAGGA +645839-1_3 0 19 2573 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGA * MD:Z:20T NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|-1|21M|20T|AAGTGCTGTCATAGCTGAGGA +645839-1_3 256 19 89 1 21M * 0 0 AAGTGCTGTCATAGCTGAGGA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|-1|21M|20T0|AAGTGCTGTCATAGCTGAGGA +67830-4_3 256 19 89 1 21M * 0 0 AAGTGCTGTCATAGCTGAGGT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|-1|21M|21|AAGTGCTGTCATAGCTGAGGT +67830-4_3 0 19 89 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|-1|21M|21|AAGTGCTGTCATAGCTGAGGT +67830-4_3 0 19 2573 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|-1|21M|21|AAGTGCTGTCATAGCTGAGGT +535182-1_3 256 19 89 1 21M * 0 0 AAGTGCTTTCATAGCTGAGGT * MD:Z:7G13 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|-1|21M|7G13|AAGTGCTTTCATAGCTGAGGT +535182-1_3 0 19 89 255 21M * 0 0 AAGTGCTTTCATAGCTGAGGT * MD:Z:7G13 NM:i:1 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|-1|21M|7G13|AAGTGCTTTCATAGCTGAGGT +535182-1_3 0 19 2573 255 21M * 0 0 AAGTGCTTTCATAGCTGAGGT * MD:Z:7G13 NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|-1|21M|7G13|AAGTGCTTTCATAGCTGAGGT +766380-1_3 0 19 89 255 20M * 0 0 AAGTGCTGTCATCGCTGAGG * MD:Z:12A7 NM:i:1 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|-2|20M|12A7|AAGTGCTGTCATCGCTGAGG +766380-1_3 256 19 89 1 20M * 0 0 AAGTGCTGTCATCGCTGAGG * MD:Z:12A7 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|-2|20M|12A7|AAGTGCTGTCATCGCTGAGG +766380-1_3 0 19 2573 255 20M * 0 0 AAGTGCTGTCATCGCTGAGG * MD:Z:12A7 NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|-2|20M|12A7|AAGTGCTGTCATCGCTGAGG +67831-4_3 0 19 89 255 20M * 0 0 AAGTGCTGTCATAGCTGAGG * MD:Z:20 NM:i:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|-2|20M|20|AAGTGCTGTCATAGCTGAGG +67831-4_3 256 19 89 1 20M * 0 0 AAGTGCTGTCATAGCTGAGG * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|-2|20M|20|AAGTGCTGTCATAGCTGAGG +67831-4_3 0 19 2573 255 20M * 0 0 AAGTGCTGTCATAGCTGAGG * MD:Z:20 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|-2|20M|20|AAGTGCTGTCATAGCTGAGG +270395-1_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATCGCTGAGGTC * MD:Z:12A9 NM:i:1 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|0|22M|12A9|AAGTGCTGTCATCGCTGAGGTC +270395-1_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATCGCTGAGGTC * MD:Z:12A9 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|0|22M|12A9|AAGTGCTGTCATCGCTGAGGTC +270395-1_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATCGCTGAGGTC * MD:Z:12A9 NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|0|22M|12A9|AAGTGCTGTCATCGCTGAGGTC +773136-1_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATAGCTGCGGTC * MD:Z:17A4 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|0|22M|17A4|AAGTGCTGTCATAGCTGCGGTC +773136-1_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATAGCTGCGGTC * MD:Z:17A4 NM:i:1 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|0|22M|17A4|AAGTGCTGTCATAGCTGCGGTC +773136-1_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATAGCTGCGGTC * MD:Z:17A4 NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|0|22M|17A4|AAGTGCTGTCATAGCTGCGGTC +102065-3_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTT * MD:Z:21C NM:i:1 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|0|22M|21C|AAGTGCTGTCATAGCTGCGGTT +102065-3_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTT * MD:Z:21C NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|0|22M|21C|AAGTGCTGTCATAGCTGCGGTT +102065-3_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATAGCTGAGGTT * MD:Z:21C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|0|22M|21C0|AAGTGCTGTCATAGCTGCGGTT +37896-9_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATAGCTGAGGTC * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|0|22M|22|AAGTGCTGTCATAGCTGAGGTC +37896-9_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTC * MD:Z:22 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|0|22M|22|AAGTGCTGTCATAGCTGAGGTC +37896-9_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTC * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|0|22M|22|AAGTGCTGTCATAGCTGAGGTC +334943-1_2 256 19 89 1 23M * 0 0 AAGTGCTGTCATAGCTGAGGTAG * MD:Z:21C0C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 YW:Z:hsa-miR-512-3p|0|1|23M|21C0C0|AAGTGCTGTCATAGCTGAGGTAG +334943-1_2 0 19 2573 1 23M * 0 0 AAGTGCTGTCATAGCTGAGGTAG * MD:Z:21C0C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 YW:Z:hsa-miR-512-3p|0|1|23M|21C0C0|AAGTGCTGTCATAGCTGAGGTAG +270396-1_3 0 19 89 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCT * MD:Z:22C NM:i:1 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT +270401-1_2 0 19 89 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCA * MD:Z:22C NM:i:1 NH:i:2 HI:i:1 YW:Z:hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA +270396-1_3 0 19 2573 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCT * MD:Z:22C NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT +270401-1_2 0 19 2573 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCA * MD:Z:22C NM:i:1 NH:i:2 HI:i:2 YW:Z:hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA +270396-1_3 256 19 89 1 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCT * MD:Z:22C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|1|23M|22C0|AAGTGCTGTCATAGCTGAGGTCT +673650-1_2 256 19 89 1 23M * 0 0 AAGAGCTGTCATAGCTGAGGTCT * MD:Z:3T18C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 YW:Z:hsa-miR-512-3p|0|1|23M|3T18C0|AAGAGCTGTCATAGCTGAGGTCT +673650-1_2 0 19 2573 1 23M * 0 0 AAGAGCTGTCATAGCTGAGGTCT * MD:Z:3T18C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 YW:Z:hsa-miR-512-3p|0|1|23M|3T18C0|AAGAGCTGTCATAGCTGAGGTCT +150819-2_3 256 19 53 1 21M * 0 0 ACTCAGCCTTGAGGGCACTTT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-5p|1|-1|21M|21|ACTCAGCCTTGAGGGCACTTT +150819-2_3 0 19 53 255 21M * 0 0 ACTCAGCCTTGAGGGCACTTT * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-5p|1|-1|21M|21|ACTCAGCCTTGAGGGCACTTT +150819-2_3 0 19 2537 255 21M * 0 0 ACTCAGCCTTGAGGGCACTTT * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-5p|1|-1|21M|21|ACTCAGCCTTGAGGGCACTTT +270402-1_3 0 19 53 255 20M * 0 0 ACTCAGCCTTGAGGGCACTT * MD:Z:20 NM:i:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-5p|1|-2|20M|20|ACTCAGCCTTGAGGGCACTT +270402-1_3 256 19 53 1 20M * 0 0 ACTCAGCCTTGAGGGCACTT * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-5p|1|-2|20M|20|ACTCAGCCTTGAGGGCACTT +270402-1_3 0 19 2537 255 20M * 0 0 ACTCAGCCTTGAGGGCACTT * MD:Z:20 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-5p|1|-2|20M|20|ACTCAGCCTTGAGGGCACTT +752875-1_3 256 19 53 1 22M * 0 0 ACTCAGCCTTGAGGGCACTTTC * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-5p|1|0|22M|22|ACTCAGCCTTGAGGGCACTTTC +752875-1_3 0 19 53 255 22M * 0 0 ACTCAGCCTTGAGGGCACTTTC * MD:Z:22 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-5p|1|0|22M|22|ACTCAGCCTTGAGGGCACTTTC +752875-1_3 0 19 2537 255 22M * 0 0 ACTCAGCCTTGAGGGCACTTTC * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-5p|1|0|22M|22|ACTCAGCCTTGAGGGCACTTTC +369314-1_3 0 19 12413 255 21M * 0 0 GAGTGCCTTCTTTTGGAGCGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-515-3p|0|-1|21M|21|GAGTGCCTTCTTTTGGAGCGT +369314-1_3 256 19 12413 1 21M * 0 0 GAGTGCCTTCTTTTGGAGCGT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-515-3p|0|-1|21M|21|GAGTGCCTTCTTTTGGAGCGT +369314-1_3 0 19 18419 255 21M * 0 0 GAGTGCCTTCTTTTGGAGCGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-515-3p|0|-1|21M|21|GAGTGCCTTCTTTTGGAGCGT +54840-6_3 0 19 90116 255 22M * 0 0 TTCTCGAGGAAAGAAGCACTTT * MD:Z:22 NM:i:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-516a-5p|0|-1|22M|22|TTCTCGAGGAAAGAAGCACTTT +54840-6_3 256 19 90116 1 22M * 0 0 TTCTCGAGGAAAGAAGCACTTT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-516a-5p|0|-1|22M|22|TTCTCGAGGAAAGAAGCACTTT +54840-6_3 0 19 94508 255 22M * 0 0 TTCTCGAGGAAAGAAGCACTTT * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-516a-5p|0|-1|22M|22|TTCTCGAGGAAAGAAGCACTTT +423555-1_3 256 19 90117 1 21M * 0 0 TCTCGAGGAAAGAAGCACTTT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-516a-5p|1|-1|21M|21|TCTCGAGGAAAGAAGCACTTT +423555-1_3 0 19 90117 255 21M * 0 0 TCTCGAGGAAAGAAGCACTTT * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-516a-5p|1|-1|21M|21|TCTCGAGGAAAGAAGCACTTT +423555-1_3 0 19 94509 255 21M * 0 0 TCTCGAGGAAAGAAGCACTTT * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-516a-5p|1|-1|21M|21|TCTCGAGGAAAGAAGCACTTT +270365-1_3 0 19 58817 255 19M * 0 0 ATCTGGAGGTAAGAAGCAA * MD:Z:18C NM:i:1 NH:i:3 HI:i:2 YW:Z:hsa-miR-516b-5p|0|-3|19M|18C|ATCTGGAGGTAAGAAGCAA +270365-1_3 0 19 70220 255 19M * 0 0 ATCTGGAGGTAAGAAGCAA * MD:Z:18C NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-516b-5p|0|-3|19M|18C|ATCTGGAGGTAAGAAGCAA +270365-1_3 256 19 58817 1 19M * 0 0 ATCTGGAGGTAAGAAGCAA * MD:Z:18C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-516b-5p|0|-3|19M|18C0|ATCTGGAGGTAAGAAGCAA +270366-1_3 256 19 58817 1 22M * 0 0 ATCTGGAGGTCAGAAGCACTTT * MD:Z:10A11 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-516b-5p|0|0|22M|10A11|ATCTGGAGGTCAGAAGCACTTT +270366-1_3 0 19 58817 255 22M * 0 0 ATCTGGAGGTCAGAAGCACTTT * MD:Z:10A11 NM:i:1 NH:i:3 HI:i:2 YW:Z:hsa-miR-516b-5p|0|0|22M|10A11|ATCTGGAGGTCAGAAGCACTTT +270366-1_3 0 19 70220 255 22M * 0 0 ATCTGGAGGTCAGAAGCACTTT * MD:Z:10A11 NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-516b-5p|0|0|22M|10A11|ATCTGGAGGTCAGAAGCACTTT +86082-3_3 256 19 58817 1 22M * 0 0 ATCTGGAGGTAAGAAGCACTTT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-516b-5p|0|0|22M|22|ATCTGGAGGTAAGAAGCACTTT +86082-3_3 0 19 58817 255 22M * 0 0 ATCTGGAGGTAAGAAGCACTTT * MD:Z:22 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-516b-5p|0|0|22M|22|ATCTGGAGGTAAGAAGCACTTT +86082-3_3 0 19 70220 255 22M * 0 0 ATCTGGAGGTAAGAAGCACTTT * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-516b-5p|0|0|22M|22|ATCTGGAGGTAAGAAGCACTTT +270359-1_5 0 19 45641 255 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T NM:i:1 NH:i:5 HI:i:1 YW:Z:hsa-miR-517-5p|-1|0|23M|22T|CCCTCTAGATGGAAGCACTGTCA +270359-1_5 0 19 54440 255 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T NM:i:1 NH:i:5 HI:i:2 YW:Z:hsa-miR-517-5p|-1|0|23M|22T|CCCTCTAGATGGAAGCACTGTCA +270359-1_5 0 19 74691 255 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T NM:i:1 NH:i:5 HI:i:4 YW:Z:hsa-miR-517-5p|-1|0|23M|22T|CCCTCTAGATGGAAGCACTGTCA +270359-1_5 256 19 54440 1 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:3 YW:Z:hsa-miR-517-5p|-1|0|23M|22T0|CCCTCTAGATGGAAGCACTGTCA +270359-1_5 256 19 74691 1 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:5 YW:Z:hsa-miR-517-5p|-1|0|23M|22T0|CCCTCTAGATGGAAGCACTGTCA +752904-1_3 0 19 45646 1 6M1D13M * 0 0 GAGATGAAGCACTGTCTGT * MD:Z:0T5^G13 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|0T5^G13|GAGATGAAGCACTGTCTGT +752904-1_3 256 19 54445 1 6M1D13M * 0 0 GAGATGAAGCACTGTCTGT * MD:Z:0T5^G13 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|0T5^G13|GAGATGAAGCACTGTCTGT +752904-1_3 256 19 74696 1 6M1D13M * 0 0 GAGATGAAGCACTGTCTGT * MD:Z:0T5^G13 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|0T5^G13|GAGATGAAGCACTGTCTGT +105051-3_3 0 19 45646 1 6M1D13M * 0 0 TAGATGAAGCACTGTATGT * MD:Z:6^G9C3 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|6^G9C3|TAGATGAAGCACTGTATGT +105051-3_3 256 19 54445 1 6M1D13M * 0 0 TAGATGAAGCACTGTATGT * MD:Z:6^G9C3 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|6^G9C3|TAGATGAAGCACTGTATGT +105051-3_3 256 19 74696 1 6M1D13M * 0 0 TAGATGAAGCACTGTATGT * MD:Z:6^G9C3 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|6^G9C3|TAGATGAAGCACTGTATGT +120530-2_3 256 19 45681 1 21M * 0 0 ATCGTGCATCCCTTTAGAGTG * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-517a-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG +120530-2_3 0 19 45681 255 21M * 0 0 ATCGTGCATCCCTTTAGAGTG * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-517a-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG +67957-4_3 0 19 45681 255 22M * 0 0 ATCGTGCATCCCTTTAGAGTGT * MD:Z:22 NM:i:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-517a-3p|0|0|22M|22|ATCGTGCATCCCTTTAGAGTGT +67957-4_3 256 19 45681 1 22M * 0 0 ATCGTGCATCCCTTTAGAGTGT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-517a-3p|0|0|22M|22|ATCGTGCATCCCTTTAGAGTGT +120530-2_3 0 19 54478 255 21M * 0 0 ATCGTGCATCCCTTTAGAGTG * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-517b-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG +67957-4_3 0 19 54478 255 22M * 0 0 ATCGTGCATCCCTTTAGAGTGT * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-517b-3p|0|0|22M|22|ATCGTGCATCCCTTTAGAGTGT +447402-1_1 0 19 36147 255 22M * 0 0 CAAAGCGCTCCCCTTTAGAGGT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-518b|0|0|22M|22|CAAAGCGCTCCCCTTTAGAGGT +270377-1_1 0 19 42119 255 21M * 0 0 CTCTGGAGGGAAGCACTTTCT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-518c-5p|1|-1|21M|21|CTCTGGAGGGAAGCACTTTCT +751085-1_1 0 19 42119 255 20M * 0 0 CTCTGGAGGGAAGCACTTTA * MD:Z:19C NH:i:1 NM:i:1 YW:Z:hsa-miR-518c-5p|1|-2|20M|19C|CTCTGGAGGGAAGCACTTTA +270378-1_1 0 19 42119 255 22M * 0 0 CTCTGGAGGGAAGCACTTTCTG * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-518c-5p|1|0|22M|22|CTCTGGAGGGAAGCACTTTCTG +120527-2_9 0 19 68252 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:8 YW:Z:hsa-miR-518d-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA +120527-2_9 256 19 68252 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:9 YW:Z:hsa-miR-518d-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA +95680-3_9 0 19 68252 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:8 YW:Z:hsa-miR-518d-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +95680-3_9 256 19 68252 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:9 YW:Z:hsa-miR-518d-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +270379-1_5 256 19 68252 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:5 YW:Z:hsa-miR-518d-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA +139675-2_9 256 19 68252 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:8 YW:Z:hsa-miR-518d-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC +139675-2_9 0 19 68252 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:9 YW:Z:hsa-miR-518d-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC +531738-1_9 256 19 68252 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:8 YW:Z:hsa-miR-518d-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT +531738-1_9 0 19 68252 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:9 YW:Z:hsa-miR-518d-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT +270381-1_7 256 19 68252 1 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:7 HI:i:6 YW:Z:hsa-miR-518d-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTG +270381-1_7 0 19 68252 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 NH:i:7 HI:i:7 YW:Z:hsa-miR-518d-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTG +270360-1_1 0 19 63251 255 21M * 0 0 AAAGCGCTTCCCTTCAGAGTG * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-518e-3p|0|0|21M|21|AAAGCGCTTCCCTTCAGAGTG +676180-1_6 0 19 63213 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:4 YW:Z:hsa-miR-518e-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA +18915-24_11 0 19 63213 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:7 YW:Z:hsa-miR-518e-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +270361-1_11 0 19 63213 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:7 YW:Z:hsa-miR-518e-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA +630277-1_11 0 19 63213 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:7 YW:Z:hsa-miR-518e-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +67687-4_11 0 19 63213 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:7 YW:Z:hsa-miR-518e-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +84523-3_11 0 19 63213 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:7 YW:Z:hsa-miR-518e-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +120527-2_9 0 19 33390 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:1 YW:Z:hsa-miR-518f-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA +95680-3_9 0 19 33390 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:1 YW:Z:hsa-miR-518f-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +270379-1_5 0 19 33390 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:1 YW:Z:hsa-miR-518f-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA +139675-2_9 0 19 33390 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:1 YW:Z:hsa-miR-518f-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC +531738-1_9 0 19 33390 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:1 YW:Z:hsa-miR-518f-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT +347693-1_1 0 19 33390 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTC * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-518f-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTC +270348-1_3 0 19 85809 255 22M * 0 0 AAATTGCATCCTTTTAGAGTGT * MD:Z:3G18 NM:i:1 NH:i:3 HI:i:1 YW:Z:hsa-miR-519a-3p|0|0|22M|3G18|AAATTGCATCCTTTTAGAGTGT +270348-1_3 0 19 95757 255 22M * 0 0 AAATTGCATCCTTTTAGAGTGT * MD:Z:3G18 NM:i:1 NH:i:3 HI:i:2 YW:Z:hsa-miR-519a-3p|0|0|22M|3G18|AAATTGCATCCTTTTAGAGTGT +270348-1_3 256 19 95757 1 22M * 0 0 AAATTGCATCCTTTTAGAGTGT * MD:Z:3G18 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-519a-3p|0|0|22M|3G18|AAATTGCATCCTTTTAGAGTGT +270357-1_1 0 19 85770 255 22M * 0 0 ACTCTAGAGGGAAGCGCTTTCA * MD:Z:21T NH:i:1 NM:i:1 YW:Z:hsa-miR-519a-5p|-1|-1|22M|21T|ACTCTAGAGGGAAGCGCTTTCA +58870-5_1 0 19 85770 255 22M * 0 0 ACTCTAGAGGGAAGCGCTTTCT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-519a-5p|-1|-1|22M|22|ACTCTAGAGGGAAGCGCTTTCT +270354-1_1 0 19 85770 255 20M * 0 0 ACTCTAGAGGGAAGCGCTTT * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-519a-5p|-1|-3|20M|20|ACTCTAGAGGGAAGCGCTTT +676180-1_6 256 19 85771 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:6 YW:Z:hsa-miR-519a-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA +18915-24_11 0 19 85771 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:10 YW:Z:hsa-miR-519a-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +18915-24_11 256 19 85771 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 YW:Z:hsa-miR-519a-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +270361-1_11 0 19 85771 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:10 YW:Z:hsa-miR-519a-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA +270361-1_11 256 19 85771 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 YW:Z:hsa-miR-519a-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA +630277-1_11 0 19 85771 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:10 YW:Z:hsa-miR-519a-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +630277-1_11 256 19 85771 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 YW:Z:hsa-miR-519a-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +67687-4_11 256 19 85771 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:10 YW:Z:hsa-miR-519a-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +67687-4_11 0 19 85771 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:11 YW:Z:hsa-miR-519a-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +84523-3_11 0 19 85771 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:10 YW:Z:hsa-miR-519a-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +84523-3_11 256 19 85771 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 YW:Z:hsa-miR-519a-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +676180-1_6 256 19 28585 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:2 YW:Z:hsa-miR-519b-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA +18915-24_11 256 19 28585 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:3 YW:Z:hsa-miR-519b-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +18915-24_11 0 19 28585 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:4 YW:Z:hsa-miR-519b-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +270361-1_11 0 19 28585 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:3 YW:Z:hsa-miR-519b-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA +270361-1_11 256 19 28585 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:4 YW:Z:hsa-miR-519b-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA +630277-1_11 256 19 28585 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:3 YW:Z:hsa-miR-519b-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +630277-1_11 0 19 28585 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:4 YW:Z:hsa-miR-519b-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +67687-4_11 256 19 28585 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:3 YW:Z:hsa-miR-519b-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +67687-4_11 0 19 28585 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:4 YW:Z:hsa-miR-519b-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +84523-3_11 0 19 28585 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:3 YW:Z:hsa-miR-519b-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +84523-3_11 256 19 28585 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:4 YW:Z:hsa-miR-519b-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +676180-1_6 256 19 19844 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:1 YW:Z:hsa-miR-519c-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA +18915-24_11 0 19 19844 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:1 YW:Z:hsa-miR-519c-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +18915-24_11 256 19 19844 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:2 YW:Z:hsa-miR-519c-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +270361-1_11 0 19 19844 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:2 YW:Z:hsa-miR-519c-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA +270361-1_11 256 19 19844 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:1 YW:Z:hsa-miR-519c-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA +630277-1_11 0 19 19844 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:1 YW:Z:hsa-miR-519c-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +630277-1_11 256 19 19844 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:2 YW:Z:hsa-miR-519c-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +67687-4_11 0 19 19844 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:1 YW:Z:hsa-miR-519c-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +67687-4_11 256 19 19844 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:2 YW:Z:hsa-miR-519c-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +84523-3_11 256 19 19844 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:1 YW:Z:hsa-miR-519c-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +84523-3_11 0 19 19844 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:2 YW:Z:hsa-miR-519c-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +270371-1_1 0 19 46760 255 21M * 0 0 CAAAGTGCCTCCCTTTAGAGT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-519d-3p|0|-1|21M|21|CAAAGTGCCTCCCTTTAGAGT +153079-2_1 0 19 46760 255 20M * 0 0 CAAAGTGCCTCCCTTTAGAG * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-519d-3p|0|-2|20M|20|CAAAGTGCCTCCCTTTAGAG +67829-4_1 0 19 24293 255 22M * 0 0 AAAGTGCTTCCCTTTGGACTGT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-520a-3p|0|0|22M|22|AAAGTGCTTCCCTTTGGACTGT +655140-1_1 0 19 24293 255 22M * 0 0 AAATTGCTTCCCTTTGGACTGT * MD:Z:3G18 NH:i:1 NM:i:1 YW:Z:hsa-miR-520a-3p|0|0|22M|3G18|AAAGTGCTTCCCTTTGGACTGT +485300-1_1 0 19 24293 255 23M * 0 0 AAAGTGCTTCCCTTTGGACTGTA * MD:Z:22T NH:i:1 NM:i:1 YW:Z:hsa-miR-520a-3p|0|1|23M|22T|AAAGTGCTTCCCTTTGGACTGTA +729311-1_1 0 19 24255 1 21M * 0 0 CTCCAGAGGGAAGTACTTTGA * HI:i:0 MD:Z:19C0T0 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|0|21M|19C0T0|CTCCAGAGGGAAGTACTTTGA +720817-1_1 0 19 24255 255 21M * 0 0 CTCCAGAGGGAAGTACTTTCG * MD:Z:20T NM:i:1 NH:i:1 HI:i:1 YW:Z:hsa-miR-520a-5p|0|0|21M|20T|CTCCAGAGGGAAGTACTTTCG +120535-2_1 0 19 24255 255 21M * 0 0 CTCCAGAGGGAAGTACTTTCT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-520a-5p|0|0|21M|21|CTCCAGAGGGAAGTACTTTCT +228043-1_1 0 19 24255 1 19M1D2M * 0 0 CTCCAGAGGGAAGTACTTTAG * HI:i:0 MD:Z:19^C0T1 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1|CTCCAGAGGGAAGTACTTTAG +609803-1_1 0 19 24255 1 19M1I3M * 0 0 CTCCAGAGGGAAGTACTTTGAAG * HI:i:0 MD:Z:19C0T1 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|1|19M1I3M|19C0T1|CTCCAGAGGGAAGTACTTTGAAG +101076-3_1 0 19 24255 1 19M1D3M * 0 0 CTCCAGAGGGAAGTACTTTAGA * HI:i:0 MD:Z:19^C0T1T0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0|CTCCAGAGGGAAGTACTTTAGA +127441-2_1 0 19 24255 1 19M1D3M * 0 0 CTCCAGAGGGAAGTACTTTTAA * HI:i:0 MD:Z:19^C1G0T0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0|CTCCAGAGGGAAGTACTTTTAA +103161-3_1 0 19 24255 1 20M1D2M * 0 0 CTCCAGAGGGAAGTACTTTCGA * HI:i:0 MD:Z:20^T1T0 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0|CTCCAGAGGGAAGTACTTTCGA +478794-1_1 0 19 24255 1 23M * 0 0 CTCCAGAGGGAAGTACTTTAAGA * HI:i:0 MD:Z:19C0T1T0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|2|23M|19C0T1T0|CTCCAGAGGGAAGTACTTTAAGA +744127-1_5 0 19 34626 255 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 NH:i:5 HI:i:2 YW:Z:hsa-miR-520b-3p|-1|-1|21M|21|GAAAGTGCTTCCTTTTAGAGG +744127-1_5 256 19 34626 1 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:3 YW:Z:hsa-miR-520b-3p|-1|-1|21M|21|GAAAGTGCTTCCTTTTAGAGG +120532-2_3 0 19 34627 255 22M * 0 0 AAAGTGCTTCCTTTTAGAGGGT * MD:Z:22 NM:i:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-520b-3p|0|1|22M|22|AAAGTGCTTCCTTTTAGAGGGT +744127-1_5 0 19 40865 255 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 NH:i:5 HI:i:4 YW:Z:hsa-miR-520c-3p|-1|-2|21M|21|GAAAGTGCTTCCTTTTAGAGG +744127-1_5 256 19 40865 1 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:5 YW:Z:hsa-miR-520c-3p|-1|-2|21M|21|GAAAGTGCTTCCTTTTAGAGG +120532-2_3 256 19 40866 1 22M * 0 0 AAAGTGCTTCCTTTTAGAGGGT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-520c-3p|0|0|22M|22|AAAGTGCTTCCTTTTAGAGGGT +120532-2_3 0 19 40866 255 22M * 0 0 AAAGTGCTTCCTTTTAGAGGGT * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-520c-3p|0|0|22M|22|AAAGTGCTTCCTTTTAGAGGGT +120527-2_9 0 19 40828 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:4 YW:Z:hsa-miR-520c-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA +120527-2_9 256 19 40828 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:5 YW:Z:hsa-miR-520c-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA +95680-3_9 256 19 40828 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:4 YW:Z:hsa-miR-520c-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +95680-3_9 0 19 40828 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:5 YW:Z:hsa-miR-520c-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +270379-1_5 256 19 40828 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:3 YW:Z:hsa-miR-520c-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA +139675-2_9 256 19 40828 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:4 YW:Z:hsa-miR-520c-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC +139675-2_9 0 19 40828 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:5 YW:Z:hsa-miR-520c-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC +531738-1_9 256 19 40828 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:4 YW:Z:hsa-miR-520c-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT +531738-1_9 0 19 40828 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:5 YW:Z:hsa-miR-520c-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT +270381-1_7 256 19 40828 1 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:7 HI:i:3 YW:Z:hsa-miR-520c-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTG +270381-1_7 0 19 40828 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 NH:i:7 HI:i:4 YW:Z:hsa-miR-520c-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTG +361022-1_1 0 19 9124 255 21M * 0 0 AAAGTGCTTCCTTTTTGAGGG * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-520e-3p|0|0|21M|21|AAAGTGCTTCCTTTTTGAGGG +772976-1_1 0 19 9089 1 7M1I9M * 0 0 AAAATGGGAAGCAGTTT * HI:i:0 MD:Z:2G13 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520e-5p|3|-3|7M1I9M|2G13|AAAATGGGAAGCAGTTT +270368-1_3 0 19 55581 255 21M * 0 0 CAAAGTGCTTCCCTTTAGAGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-520g-3p|1|-2|21M|21|CAAAGTGCTTCCCTTTAGAGT +270369-1_1 0 19 55581 255 23M * 0 0 CAAAGTGCTTCCCTTTAGAGTGT * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-520g-3p|1|0|23M|23|CAAAGTGCTTCCCTTTAGAGTGT +138559-2_2 0 19 55539 1 12M1D2M1D2M1I6M * 0 0 CCCTCTAGAGGAGCCTGTTCTGT * MD:Z:12^A2^A8 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 YW:Z:hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8|CCCTCTAGAGGAGCCTGTTCTGT +270368-1_3 0 19 75927 255 21M * 0 0 CAAAGTGCTTCCCTTTAGAGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-520h|1|0|21M|21|CAAAGTGCTTCCCTTTAGAGT +270368-1_3 256 19 75927 1 21M * 0 0 CAAAGTGCTTCCCTTTAGAGT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-520h|1|0|21M|21|CAAAGTGCTTCCCTTTAGAGT +270358-1_1 0 19 84624 1 22M * 0 0 AGAATGGTTCCCTTTAGAGTGT * MD:Z:1A20 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:1 HI:i:1 YW:Z:hsa-miR-522-3p|0|0|22M|1A20|AGAATGGTTCCCTTTAGAGTGT +676180-1_6 256 19 84586 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:5 YW:Z:hsa-miR-522-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA +18915-24_11 0 19 84586 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:8 YW:Z:hsa-miR-522-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +18915-24_11 256 19 84586 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:9 YW:Z:hsa-miR-522-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +270361-1_11 0 19 84586 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:9 YW:Z:hsa-miR-522-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA +270361-1_11 256 19 84586 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:8 YW:Z:hsa-miR-522-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA +630277-1_11 256 19 84586 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:8 YW:Z:hsa-miR-522-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +630277-1_11 0 19 84586 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:9 YW:Z:hsa-miR-522-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +67687-4_11 0 19 84586 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:8 YW:Z:hsa-miR-522-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +67687-4_11 256 19 84586 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:9 YW:Z:hsa-miR-522-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +84523-3_11 256 19 84586 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:8 YW:Z:hsa-miR-522-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +84523-3_11 0 19 84586 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:9 YW:Z:hsa-miR-522-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +676180-1_6 256 19 31760 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:3 YW:Z:hsa-miR-523-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA +18915-24_11 256 19 31760 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 YW:Z:hsa-miR-523-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +18915-24_11 0 19 31760 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:6 YW:Z:hsa-miR-523-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +270361-1_11 0 19 31760 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:6 YW:Z:hsa-miR-523-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA +270361-1_11 256 19 31760 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 YW:Z:hsa-miR-523-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA +630277-1_11 256 19 31760 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 YW:Z:hsa-miR-523-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +630277-1_11 0 19 31760 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:6 YW:Z:hsa-miR-523-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +67687-4_11 256 19 31760 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 YW:Z:hsa-miR-523-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +67687-4_11 0 19 31760 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:6 YW:Z:hsa-miR-523-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +84523-3_11 0 19 31760 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:5 YW:Z:hsa-miR-523-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +84523-3_11 256 19 31760 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:6 YW:Z:hsa-miR-523-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +270375-1_1 0 19 44377 255 21M * 0 0 CTACAAAGGGAAGCACTTTCT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-524-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +270376-1_1 0 19 44377 255 20M * 0 0 CTACAAAGGGAAGCACTTTC * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-524-5p|0|-2|20M|20|CTACAAAGGGAAGCACTTTC +57516-5_1 0 19 30907 255 20M * 0 0 CTCCAGAGGGATGCACTTTC * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-525-5p|0|-1|20M|20|CTCCAGAGGGATGCACTTTC +102026-3_1 0 19 30907 255 21M * 0 0 CTCCAGAGGGATGCACTTTCT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-525-5p|0|0|21M|21|CTCCAGAGGGATGCACTTTCT +120527-2_9 0 19 39626 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:3 YW:Z:hsa-miR-526a-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA +120527-2_9 0 19 60288 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:7 YW:Z:hsa-miR-526a-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA +120527-2_9 256 19 39626 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:2 YW:Z:hsa-miR-526a-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA +120527-2_9 256 19 60288 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:6 YW:Z:hsa-miR-526a-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA +95680-3_9 256 19 39626 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:2 YW:Z:hsa-miR-526a-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +95680-3_9 0 19 39626 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:3 YW:Z:hsa-miR-526a-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +95680-3_9 256 19 60288 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:6 YW:Z:hsa-miR-526a-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +95680-3_9 0 19 60288 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:7 YW:Z:hsa-miR-526a-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +270379-1_5 256 19 39626 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:2 YW:Z:hsa-miR-526a-5p|0|-1|21M|3T16T0|CTCTAGAGGGAAGCACTTTCA +270379-1_5 256 19 60288 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:4 YW:Z:hsa-miR-526a-5p|0|-1|21M|3T16T0|CTCTAGAGGGAAGCACTTTCA +139675-2_9 0 19 39626 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:2 YW:Z:hsa-miR-526a-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC +139675-2_9 256 19 39626 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:3 YW:Z:hsa-miR-526a-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC +139675-2_9 0 19 60288 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:6 YW:Z:hsa-miR-526a-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC +139675-2_9 256 19 60288 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:7 YW:Z:hsa-miR-526a-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC +531738-1_9 0 19 39626 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:2 YW:Z:hsa-miR-526a-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT +531738-1_9 256 19 39626 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:3 YW:Z:hsa-miR-526a-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT +531738-1_9 0 19 60288 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:6 YW:Z:hsa-miR-526a-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT +531738-1_9 256 19 60288 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:7 YW:Z:hsa-miR-526a-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT +270381-1_7 0 19 39626 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 NH:i:7 HI:i:1 YW:Z:hsa-miR-526a-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTG +270381-1_7 256 19 39626 1 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:7 HI:i:2 YW:Z:hsa-miR-526a-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTG +270381-1_7 0 19 60288 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 NH:i:7 HI:i:5 YW:Z:hsa-miR-526a-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTG diff --git a/scripts/tests/files/in_aln_tag_XN.sam b/scripts/tests/files/in_aln_tag_XN.sam index ce7d13d..0ba6745 100644 --- a/scripts/tests/files/in_aln_tag_XN.sam +++ b/scripts/tests/files/in_aln_tag_XN.sam @@ -3,257 +3,266 @@ @PG ID:samtools PN:samtools VN:1.16.1 CL:samtools sort -n -o results/test_lib/header_sorted_catMappings.sam results/test_lib/concatenated_header_catMappings.sam @PG ID:samtools.1 PN:samtools PP:samtools VN:1.16.1 CL:samtools view -H results/test_lib/removeMultimappers.sam @PG ID:samtools.2 PN:samtools PP:samtools.1 VN:1.16.1 CL:samtools view -H results/test_lib/premir_intersectedAlignments.sam -@PG ID:samtools.3 PN:samtools PP:samtools.2 VN:1.16.1 CL:samtools sort -t YW -O SAM results/test_lib/mirna_intersecting_tag.sam -709268-1_1 0 19 5338 255 21M * 0 0 TCAAAACTGAGGGGCATTTTC * MD:Z:21 NH:i:1 NM:i:0 XN:Z:hsa-miR-1323|0|-1|21M|21 -528546-1_1 0 19 5338 255 22M * 0 0 TCAAAACTGAGGGGCATTTTCT * MD:Z:22 NH:i:1 NM:i:0 XN:Z:hsa-miR-1323|0|0|22M|22 -270342-1_1 0 19 121040 255 20M * 0 0 ACTCAAACTGTGGGGGCACT * MD:Z:20 NH:i:1 NM:i:0 XN:Z:hsa-miR-371a-5p|0|0|20M|20 -840419-1_1 0 19 121040 1 23M * 0 0 ACTCAAACTGTGGGGGCCCTTAG * HI:i:0 MD:Z:17A3T0C0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-371a-5p|0|3|23M|17A3T0C0 -120522-2_1 16 19 121038 255 22M * 0 0 GCACTCAAACTGTGGGGGCACT * MD:Z:22 NH:i:1 NM:i:0 XN:Z:hsa-miR-371b-3p|0|-1|22M|22 -299969-1_1 0 19 121291 1 22M * 0 0 CGAGCGCTGCGACATTTGAGCG * HI:i:0 MD:Z:0A0A2T17 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-372-3p|0|-1|22M|0A0A2T17 -67825-4_1 0 19 121291 255 22M * 0 0 AAAGTGCTGCGACATTTGAGCG * MD:Z:22 NH:i:1 NM:i:0 XN:Z:hsa-miR-372-3p|0|-1|22M|22 -90583-3_1 0 19 121291 255 22M * 0 0 AAATTGCTGCGACATTTGAGCG * MD:Z:3G18 NH:i:1 NM:i:1 XN:Z:hsa-miR-372-3p|0|-1|22M|3G18 -629861-1_1 0 19 121291 1 23M * 0 0 AGAGTGCTGCGACATTTGAGCGA * HI:i:0 MD:Z:1A20T0 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-372-3p|0|0|23M|1A20T0 -120521-2_1 0 19 121291 255 23M * 0 0 AAAGTGCTGCGACATTTGAGCGA * MD:Z:22T NH:i:1 NM:i:1 XN:Z:hsa-miR-372-3p|0|0|23M|22T -739110-1_1 0 19 121291 255 23M * 0 0 AAAGTGCTGCGACATTTGAGCGT * MD:Z:23 NH:i:1 NM:i:0 XN:Z:hsa-miR-372-3p|0|0|23M|23 -270338-1_1 0 19 121291 255 23M * 0 0 AAATTGCTGCGACATTTGAGCGT * MD:Z:3G19 NH:i:1 NM:i:1 XN:Z:hsa-miR-372-3p|0|0|23M|3G19 -267649-1_1 0 19 121292 255 21M1I1M * 0 0 AAGTGCTGCGACATTTGAGCGAT * MD:Z:23 NH:i:1 NM:i:1 XN:Z:hsa-miR-372-3p|1|0|21M1I1M|23 -313132-1_1 0 19 121292 255 22M * 0 0 AAGTGCTGCGACATTTGAGCGT * MD:Z:22 NH:i:1 NM:i:0 XN:Z:hsa-miR-372-3p|1|0|22M|22 -270337-1_1 0 19 121292 1 4M1I18M * 0 0 AACTTGCTGCGACATTTGAGCGT * HI:i:0 MD:Z:2G19 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-372-3p|1|0|4M1I18M|2G19 -188149-2_1 0 19 122108 255 23M * 0 0 GAAGTGCTTCGATTTTGGGGTGT * MD:Z:23 NH:i:1 NM:i:0 XN:Z:hsa-miR-373-3p|0|0|23M|23 -270393-1_1 0 19 7590 255 23M * 0 0 TTTCAAGCCAGGGGGCGTTTTTC * MD:Z:23 NH:i:1 NM:i:0 XN:Z:hsa-miR-498-5p|0|0|23M|23 -610105-1_2 256 19 87 1 3M1I17M * 0 0 GAACAGTGCTGTGATAACTGA * MD:Z:11C3G4 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 XN:Z:hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4 -610105-1_2 0 19 2571 1 3M1I17M * 0 0 GAACAGTGCTGTGATAACTGA * MD:Z:11C3G4 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 XN:Z:hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4 -645839-1_3 0 19 89 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGA * MD:Z:20T NM:i:1 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-3p|0|-1|21M|20T -645839-1_3 0 19 2573 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGA * MD:Z:20T NM:i:1 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-3p|0|-1|21M|20T -645839-1_3 256 19 89 1 21M * 0 0 AAGTGCTGTCATAGCTGAGGA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-3p|0|-1|21M|20T0 -67830-4_3 256 19 89 1 21M * 0 0 AAGTGCTGTCATAGCTGAGGT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-3p|0|-1|21M|21 -67830-4_3 0 19 89 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-3p|0|-1|21M|21 -67830-4_3 0 19 2573 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-3p|0|-1|21M|21 -535182-1_3 256 19 89 1 21M * 0 0 AAGTGCTTTCATAGCTGAGGT * MD:Z:7G13 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-3p|0|-1|21M|7G13 -535182-1_3 0 19 89 255 21M * 0 0 AAGTGCTTTCATAGCTGAGGT * MD:Z:7G13 NM:i:1 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-3p|0|-1|21M|7G13 -535182-1_3 0 19 2573 255 21M * 0 0 AAGTGCTTTCATAGCTGAGGT * MD:Z:7G13 NM:i:1 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-3p|0|-1|21M|7G13 -766380-1_3 0 19 89 255 20M * 0 0 AAGTGCTGTCATCGCTGAGG * MD:Z:12A7 NM:i:1 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-3p|0|-2|20M|12A7 -766380-1_3 256 19 89 1 20M * 0 0 AAGTGCTGTCATCGCTGAGG * MD:Z:12A7 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-3p|0|-2|20M|12A7 -766380-1_3 0 19 2573 255 20M * 0 0 AAGTGCTGTCATCGCTGAGG * MD:Z:12A7 NM:i:1 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-3p|0|-2|20M|12A7 -67831-4_3 0 19 89 255 20M * 0 0 AAGTGCTGTCATAGCTGAGG * MD:Z:20 NM:i:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-3p|0|-2|20M|20 -67831-4_3 256 19 89 1 20M * 0 0 AAGTGCTGTCATAGCTGAGG * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-3p|0|-2|20M|20 -67831-4_3 0 19 2573 255 20M * 0 0 AAGTGCTGTCATAGCTGAGG * MD:Z:20 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-3p|0|-2|20M|20 -270395-1_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATCGCTGAGGTC * MD:Z:12A9 NM:i:1 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-3p|0|0|22M|12A9 -270395-1_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATCGCTGAGGTC * MD:Z:12A9 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-3p|0|0|22M|12A9 -270395-1_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATCGCTGAGGTC * MD:Z:12A9 NM:i:1 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-3p|0|0|22M|12A9 -773136-1_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATAGCTGCGGTC * MD:Z:17A4 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-3p|0|0|22M|17A4 -773136-1_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATAGCTGCGGTC * MD:Z:17A4 NM:i:1 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-3p|0|0|22M|17A4 -773136-1_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATAGCTGCGGTC * MD:Z:17A4 NM:i:1 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-3p|0|0|22M|17A4 -102065-3_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTT * MD:Z:21C NM:i:1 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-3p|0|0|22M|21C -102065-3_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTT * MD:Z:21C NM:i:1 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-3p|0|0|22M|21C -102065-3_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATAGCTGAGGTT * MD:Z:21C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-3p|0|0|22M|21C0 -37896-9_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATAGCTGAGGTC * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-3p|0|0|22M|22 -37896-9_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTC * MD:Z:22 NM:i:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-3p|0|0|22M|22 -37896-9_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTC * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-3p|0|0|22M|22 -334943-1_2 256 19 89 1 23M * 0 0 AAGTGCTGTCATAGCTGAGGTAG * MD:Z:21C0C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 XN:Z:hsa-miR-512-3p|0|1|23M|21C0C0 -334943-1_2 0 19 2573 1 23M * 0 0 AAGTGCTGTCATAGCTGAGGTAG * MD:Z:21C0C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 XN:Z:hsa-miR-512-3p|0|1|23M|21C0C0 -270396-1_3 0 19 89 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCT * MD:Z:22C NM:i:1 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-3p|0|1|23M|22C -270401-1_2 0 19 89 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCA * MD:Z:22C NM:i:1 NH:i:2 HI:i:1 XN:Z:hsa-miR-512-3p|0|1|23M|22C -270396-1_3 0 19 2573 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCT * MD:Z:22C NM:i:1 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-3p|0|1|23M|22C -270401-1_2 0 19 2573 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCA * MD:Z:22C NM:i:1 NH:i:2 HI:i:2 XN:Z:hsa-miR-512-3p|0|1|23M|22C -270396-1_3 256 19 89 1 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCT * MD:Z:22C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-3p|0|1|23M|22C0 -673650-1_2 256 19 89 1 23M * 0 0 AAGAGCTGTCATAGCTGAGGTCT * MD:Z:3T18C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 XN:Z:hsa-miR-512-3p|0|1|23M|3T18C0 -673650-1_2 0 19 2573 1 23M * 0 0 AAGAGCTGTCATAGCTGAGGTCT * MD:Z:3T18C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 XN:Z:hsa-miR-512-3p|0|1|23M|3T18C0 -150819-2_3 256 19 53 1 21M * 0 0 ACTCAGCCTTGAGGGCACTTT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-5p|1|-1|21M|21 -150819-2_3 0 19 53 255 21M * 0 0 ACTCAGCCTTGAGGGCACTTT * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-5p|1|-1|21M|21 -150819-2_3 0 19 2537 255 21M * 0 0 ACTCAGCCTTGAGGGCACTTT * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-5p|1|-1|21M|21 -270402-1_3 0 19 53 255 20M * 0 0 ACTCAGCCTTGAGGGCACTT * MD:Z:20 NM:i:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-5p|1|-2|20M|20 -270402-1_3 256 19 53 1 20M * 0 0 ACTCAGCCTTGAGGGCACTT * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-5p|1|-2|20M|20 -270402-1_3 0 19 2537 255 20M * 0 0 ACTCAGCCTTGAGGGCACTT * MD:Z:20 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-5p|1|-2|20M|20 -752875-1_3 256 19 53 1 22M * 0 0 ACTCAGCCTTGAGGGCACTTTC * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-5p|1|0|22M|22 -752875-1_3 0 19 53 255 22M * 0 0 ACTCAGCCTTGAGGGCACTTTC * MD:Z:22 NM:i:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-5p|1|0|22M|22 -752875-1_3 0 19 2537 255 22M * 0 0 ACTCAGCCTTGAGGGCACTTTC * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-5p|1|0|22M|22 -369314-1_3 0 19 12413 255 21M * 0 0 GAGTGCCTTCTTTTGGAGCGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-515-3p|0|-1|21M|21 -369314-1_3 256 19 12413 1 21M * 0 0 GAGTGCCTTCTTTTGGAGCGT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-515-3p|0|-1|21M|21 -369314-1_3 0 19 18419 255 21M * 0 0 GAGTGCCTTCTTTTGGAGCGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-515-3p|0|-1|21M|21 -54840-6_3 0 19 90116 255 22M * 0 0 TTCTCGAGGAAAGAAGCACTTT * MD:Z:22 NM:i:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-516a-5p|0|-1|22M|22 -54840-6_3 256 19 90116 1 22M * 0 0 TTCTCGAGGAAAGAAGCACTTT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-516a-5p|0|-1|22M|22 -54840-6_3 0 19 94508 255 22M * 0 0 TTCTCGAGGAAAGAAGCACTTT * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-516a-5p|0|-1|22M|22 -423555-1_3 256 19 90117 1 21M * 0 0 TCTCGAGGAAAGAAGCACTTT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-516a-5p|1|-1|21M|21 -423555-1_3 0 19 90117 255 21M * 0 0 TCTCGAGGAAAGAAGCACTTT * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-516a-5p|1|-1|21M|21 -423555-1_3 0 19 94509 255 21M * 0 0 TCTCGAGGAAAGAAGCACTTT * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-516a-5p|1|-1|21M|21 -270365-1_3 0 19 58817 255 19M * 0 0 ATCTGGAGGTAAGAAGCAA * MD:Z:18C NM:i:1 NH:i:3 HI:i:2 XN:Z:hsa-miR-516b-5p|0|-3|19M|18C -270365-1_3 0 19 70220 255 19M * 0 0 ATCTGGAGGTAAGAAGCAA * MD:Z:18C NM:i:1 NH:i:3 HI:i:3 XN:Z:hsa-miR-516b-5p|0|-3|19M|18C -270365-1_3 256 19 58817 1 19M * 0 0 ATCTGGAGGTAAGAAGCAA * MD:Z:18C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-516b-5p|0|-3|19M|18C0 -270366-1_3 256 19 58817 1 22M * 0 0 ATCTGGAGGTCAGAAGCACTTT * MD:Z:10A11 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-516b-5p|0|0|22M|10A11 -270366-1_3 0 19 58817 255 22M * 0 0 ATCTGGAGGTCAGAAGCACTTT * MD:Z:10A11 NM:i:1 NH:i:3 HI:i:2 XN:Z:hsa-miR-516b-5p|0|0|22M|10A11 -270366-1_3 0 19 70220 255 22M * 0 0 ATCTGGAGGTCAGAAGCACTTT * MD:Z:10A11 NM:i:1 NH:i:3 HI:i:3 XN:Z:hsa-miR-516b-5p|0|0|22M|10A11 -86082-3_3 256 19 58817 1 22M * 0 0 ATCTGGAGGTAAGAAGCACTTT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-516b-5p|0|0|22M|22 -86082-3_3 0 19 58817 255 22M * 0 0 ATCTGGAGGTAAGAAGCACTTT * MD:Z:22 NM:i:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-516b-5p|0|0|22M|22 -86082-3_3 0 19 70220 255 22M * 0 0 ATCTGGAGGTAAGAAGCACTTT * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-516b-5p|0|0|22M|22 -270359-1_5 0 19 45641 255 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T NM:i:1 NH:i:5 HI:i:1 XN:Z:hsa-miR-517-5p|-1|0|23M|22T -270359-1_5 0 19 54440 255 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T NM:i:1 NH:i:5 HI:i:2 XN:Z:hsa-miR-517-5p|-1|0|23M|22T -270359-1_5 0 19 74691 255 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T NM:i:1 NH:i:5 HI:i:4 XN:Z:hsa-miR-517-5p|-1|0|23M|22T -270359-1_5 256 19 54440 1 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:3 XN:Z:hsa-miR-517-5p|-1|0|23M|22T0 -270359-1_5 256 19 74691 1 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:5 XN:Z:hsa-miR-517-5p|-1|0|23M|22T0 -752904-1_3 0 19 45646 1 6M1D13M * 0 0 GAGATGAAGCACTGTCTGT * MD:Z:0T5^G13 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-517-5p|4|2|6M1D13M|0T5^G13 -752904-1_3 256 19 54445 1 6M1D13M * 0 0 GAGATGAAGCACTGTCTGT * MD:Z:0T5^G13 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-517-5p|4|2|6M1D13M|0T5^G13 -752904-1_3 256 19 74696 1 6M1D13M * 0 0 GAGATGAAGCACTGTCTGT * MD:Z:0T5^G13 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-517-5p|4|2|6M1D13M|0T5^G13 -105051-3_3 0 19 45646 1 6M1D13M * 0 0 TAGATGAAGCACTGTATGT * MD:Z:6^G9C3 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-517-5p|4|2|6M1D13M|6^G9C3 -105051-3_3 256 19 54445 1 6M1D13M * 0 0 TAGATGAAGCACTGTATGT * MD:Z:6^G9C3 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-517-5p|4|2|6M1D13M|6^G9C3 -105051-3_3 256 19 74696 1 6M1D13M * 0 0 TAGATGAAGCACTGTATGT * MD:Z:6^G9C3 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-517-5p|4|2|6M1D13M|6^G9C3 -120530-2_3 256 19 45681 1 21M * 0 0 ATCGTGCATCCCTTTAGAGTG * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-517a-3p|0|-1|21M|21 -120530-2_3 0 19 45681 255 21M * 0 0 ATCGTGCATCCCTTTAGAGTG * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-517a-3p|0|-1|21M|21 -67957-4_3 0 19 45681 255 22M * 0 0 ATCGTGCATCCCTTTAGAGTGT * MD:Z:22 NM:i:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-517a-3p|0|0|22M|22 -67957-4_3 256 19 45681 1 22M * 0 0 ATCGTGCATCCCTTTAGAGTGT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-517a-3p|0|0|22M|22 -120530-2_3 0 19 54478 255 21M * 0 0 ATCGTGCATCCCTTTAGAGTG * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-517b-3p|0|-1|21M|21 -67957-4_3 0 19 54478 255 22M * 0 0 ATCGTGCATCCCTTTAGAGTGT * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-517b-3p|0|0|22M|22 -447402-1_1 0 19 36147 255 22M * 0 0 CAAAGCGCTCCCCTTTAGAGGT * MD:Z:22 NH:i:1 NM:i:0 XN:Z:hsa-miR-518b|0|0|22M|22 -270377-1_1 0 19 42119 255 21M * 0 0 CTCTGGAGGGAAGCACTTTCT * MD:Z:21 NH:i:1 NM:i:0 XN:Z:hsa-miR-518c-5p|1|-1|21M|21 -751085-1_1 0 19 42119 255 20M * 0 0 CTCTGGAGGGAAGCACTTTA * MD:Z:19C NH:i:1 NM:i:1 XN:Z:hsa-miR-518c-5p|1|-2|20M|19C -270378-1_1 0 19 42119 255 22M * 0 0 CTCTGGAGGGAAGCACTTTCTG * MD:Z:22 NH:i:1 NM:i:0 XN:Z:hsa-miR-518c-5p|1|0|22M|22 -120527-2_9 0 19 68252 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:8 XN:Z:hsa-miR-518d-5p|0|-1|21M|20T -120527-2_9 256 19 68252 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:9 XN:Z:hsa-miR-518d-5p|0|-1|21M|20T0 -95680-3_9 0 19 68252 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:8 XN:Z:hsa-miR-518d-5p|0|-1|21M|21 -95680-3_9 256 19 68252 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:9 XN:Z:hsa-miR-518d-5p|0|-1|21M|21 -270379-1_5 256 19 68252 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:5 XN:Z:hsa-miR-518d-5p|0|-1|21M|3T16T0 -139675-2_9 256 19 68252 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:8 XN:Z:hsa-miR-518d-5p|0|-2|20M|20 -139675-2_9 0 19 68252 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:9 XN:Z:hsa-miR-518d-5p|0|-2|20M|20 -531738-1_9 256 19 68252 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:8 XN:Z:hsa-miR-518d-5p|0|-3|19M|19 -531738-1_9 0 19 68252 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:9 XN:Z:hsa-miR-518d-5p|0|-3|19M|19 -270381-1_7 256 19 68252 1 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:7 HI:i:6 XN:Z:hsa-miR-518d-5p|0|0|22M|22 -270381-1_7 0 19 68252 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 NH:i:7 HI:i:7 XN:Z:hsa-miR-518d-5p|0|0|22M|22 -270360-1_1 0 19 63251 255 21M * 0 0 AAAGCGCTTCCCTTCAGAGTG * MD:Z:21 NH:i:1 NM:i:0 XN:Z:hsa-miR-518e-3p|0|0|21M|21 -676180-1_6 0 19 63213 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:4 XN:Z:hsa-miR-518e-5p|0|-1|21M|19C0T0 -18915-24_11 0 19 63213 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:7 XN:Z:hsa-miR-518e-5p|0|-1|21M|21 -270361-1_11 0 19 63213 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:7 XN:Z:hsa-miR-518e-5p|0|-2|20M|19C -630277-1_11 0 19 63213 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:7 XN:Z:hsa-miR-518e-5p|0|-3|19M|19 -67687-4_11 0 19 63213 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:7 XN:Z:hsa-miR-518e-5p|0|0|22M|22 -84523-3_11 0 19 63213 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:7 XN:Z:hsa-miR-518e-5p|0|1|23M|23 -120527-2_9 0 19 33390 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:1 XN:Z:hsa-miR-518f-5p|0|-1|21M|20T -95680-3_9 0 19 33390 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:1 XN:Z:hsa-miR-518f-5p|0|-1|21M|21 -270379-1_5 0 19 33390 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:1 XN:Z:hsa-miR-518f-5p|0|-1|21M|3T16T0 -139675-2_9 0 19 33390 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:1 XN:Z:hsa-miR-518f-5p|0|-2|20M|20 -531738-1_9 0 19 33390 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:1 XN:Z:hsa-miR-518f-5p|0|-3|19M|19 -347693-1_1 0 19 33390 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTC * MD:Z:22 NH:i:1 NM:i:0 XN:Z:hsa-miR-518f-5p|0|0|22M|22 -270348-1_3 0 19 85809 255 22M * 0 0 AAATTGCATCCTTTTAGAGTGT * MD:Z:3G18 NM:i:1 NH:i:3 HI:i:1 XN:Z:hsa-miR-519a-3p|0|0|22M|3G18 -270348-1_3 0 19 95757 255 22M * 0 0 AAATTGCATCCTTTTAGAGTGT * MD:Z:3G18 NM:i:1 NH:i:3 HI:i:2 XN:Z:hsa-miR-519a-3p|0|0|22M|3G18 -270348-1_3 256 19 95757 1 22M * 0 0 AAATTGCATCCTTTTAGAGTGT * MD:Z:3G18 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-519a-3p|0|0|22M|3G18 -270357-1_1 0 19 85770 255 22M * 0 0 ACTCTAGAGGGAAGCGCTTTCA * MD:Z:21T NH:i:1 NM:i:1 XN:Z:hsa-miR-519a-5p|-1|-1|22M|21T -58870-5_1 0 19 85770 255 22M * 0 0 ACTCTAGAGGGAAGCGCTTTCT * MD:Z:22 NH:i:1 NM:i:0 XN:Z:hsa-miR-519a-5p|-1|-1|22M|22 -270354-1_1 0 19 85770 255 20M * 0 0 ACTCTAGAGGGAAGCGCTTT * MD:Z:20 NH:i:1 NM:i:0 XN:Z:hsa-miR-519a-5p|-1|-3|20M|20 -676180-1_6 256 19 85771 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:6 XN:Z:hsa-miR-519a-5p|0|-1|21M|19C0T0 -18915-24_11 0 19 85771 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:10 XN:Z:hsa-miR-519a-5p|0|-1|21M|21 -18915-24_11 256 19 85771 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 XN:Z:hsa-miR-519a-5p|0|-1|21M|21 -270361-1_11 0 19 85771 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:10 XN:Z:hsa-miR-519a-5p|0|-2|20M|19C -270361-1_11 256 19 85771 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 XN:Z:hsa-miR-519a-5p|0|-2|20M|19C0 -630277-1_11 0 19 85771 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:10 XN:Z:hsa-miR-519a-5p|0|-3|19M|19 -630277-1_11 256 19 85771 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 XN:Z:hsa-miR-519a-5p|0|-3|19M|19 -67687-4_11 256 19 85771 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:10 XN:Z:hsa-miR-519a-5p|0|0|22M|22 -67687-4_11 0 19 85771 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:11 XN:Z:hsa-miR-519a-5p|0|0|22M|22 -84523-3_11 0 19 85771 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:10 XN:Z:hsa-miR-519a-5p|0|1|23M|23 -84523-3_11 256 19 85771 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 XN:Z:hsa-miR-519a-5p|0|1|23M|23 -676180-1_6 256 19 28585 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:2 XN:Z:hsa-miR-519b-5p|0|-1|21M|19C0T0 -18915-24_11 256 19 28585 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:3 XN:Z:hsa-miR-519b-5p|0|-1|21M|21 -18915-24_11 0 19 28585 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:4 XN:Z:hsa-miR-519b-5p|0|-1|21M|21 -270361-1_11 0 19 28585 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:3 XN:Z:hsa-miR-519b-5p|0|-2|20M|19C -270361-1_11 256 19 28585 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:4 XN:Z:hsa-miR-519b-5p|0|-2|20M|19C0 -630277-1_11 256 19 28585 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:3 XN:Z:hsa-miR-519b-5p|0|-3|19M|19 -630277-1_11 0 19 28585 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:4 XN:Z:hsa-miR-519b-5p|0|-3|19M|19 -67687-4_11 256 19 28585 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:3 XN:Z:hsa-miR-519b-5p|0|0|22M|22 -67687-4_11 0 19 28585 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:4 XN:Z:hsa-miR-519b-5p|0|0|22M|22 -84523-3_11 0 19 28585 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:3 XN:Z:hsa-miR-519b-5p|0|1|23M|23 -84523-3_11 256 19 28585 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:4 XN:Z:hsa-miR-519b-5p|0|1|23M|23 -676180-1_6 256 19 19844 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:1 XN:Z:hsa-miR-519c-5p|0|-1|21M|19C0T0 -18915-24_11 0 19 19844 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:1 XN:Z:hsa-miR-519c-5p|0|-1|21M|21 -18915-24_11 256 19 19844 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:2 XN:Z:hsa-miR-519c-5p|0|-1|21M|21 -270361-1_11 0 19 19844 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:2 XN:Z:hsa-miR-519c-5p|0|-2|20M|19C -270361-1_11 256 19 19844 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:1 XN:Z:hsa-miR-519c-5p|0|-2|20M|19C0 -630277-1_11 0 19 19844 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:1 XN:Z:hsa-miR-519c-5p|0|-3|19M|19 -630277-1_11 256 19 19844 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:2 XN:Z:hsa-miR-519c-5p|0|-3|19M|19 -67687-4_11 0 19 19844 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:1 XN:Z:hsa-miR-519c-5p|0|0|22M|22 -67687-4_11 256 19 19844 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:2 XN:Z:hsa-miR-519c-5p|0|0|22M|22 -84523-3_11 256 19 19844 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:1 XN:Z:hsa-miR-519c-5p|0|1|23M|23 -84523-3_11 0 19 19844 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:2 XN:Z:hsa-miR-519c-5p|0|1|23M|23 -270371-1_1 0 19 46760 255 21M * 0 0 CAAAGTGCCTCCCTTTAGAGT * MD:Z:21 NH:i:1 NM:i:0 XN:Z:hsa-miR-519d-3p|0|-1|21M|21 -153079-2_1 0 19 46760 255 20M * 0 0 CAAAGTGCCTCCCTTTAGAG * MD:Z:20 NH:i:1 NM:i:0 XN:Z:hsa-miR-519d-3p|0|-2|20M|20 -67829-4_1 0 19 24293 255 22M * 0 0 AAAGTGCTTCCCTTTGGACTGT * MD:Z:22 NH:i:1 NM:i:0 XN:Z:hsa-miR-520a-3p|0|0|22M|22 -655140-1_1 0 19 24293 255 22M * 0 0 AAATTGCTTCCCTTTGGACTGT * MD:Z:3G18 NH:i:1 NM:i:1 XN:Z:hsa-miR-520a-3p|0|0|22M|3G18 -485300-1_1 0 19 24293 255 23M * 0 0 AAAGTGCTTCCCTTTGGACTGTA * MD:Z:22T NH:i:1 NM:i:1 XN:Z:hsa-miR-520a-3p|0|1|23M|22T -729311-1_1 0 19 24255 1 21M * 0 0 CTCCAGAGGGAAGTACTTTGA * HI:i:0 MD:Z:19C0T0 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-520a-5p|0|0|21M|19C0T0 -720817-1_1 0 19 24255 255 21M * 0 0 CTCCAGAGGGAAGTACTTTCG * MD:Z:20T NM:i:1 NH:i:1 HI:i:1 XN:Z:hsa-miR-520a-5p|0|0|21M|20T -120535-2_1 0 19 24255 255 21M * 0 0 CTCCAGAGGGAAGTACTTTCT * MD:Z:21 NH:i:1 NM:i:0 XN:Z:hsa-miR-520a-5p|0|0|21M|21 -228043-1_1 0 19 24255 1 19M1D2M * 0 0 CTCCAGAGGGAAGTACTTTAG * HI:i:0 MD:Z:19^C0T1 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1 -609803-1_1 0 19 24255 1 19M1I3M * 0 0 CTCCAGAGGGAAGTACTTTGAAG * HI:i:0 MD:Z:19C0T1 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-520a-5p|0|1|19M1I3M|19C0T1 -101076-3_1 0 19 24255 1 19M1D3M * 0 0 CTCCAGAGGGAAGTACTTTAGA * HI:i:0 MD:Z:19^C0T1T0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0 -127441-2_1 0 19 24255 1 19M1D3M * 0 0 CTCCAGAGGGAAGTACTTTTAA * HI:i:0 MD:Z:19^C1G0T0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0 -103161-3_1 0 19 24255 1 20M1D2M * 0 0 CTCCAGAGGGAAGTACTTTCGA * HI:i:0 MD:Z:20^T1T0 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0 -478794-1_1 0 19 24255 1 23M * 0 0 CTCCAGAGGGAAGTACTTTAAGA * HI:i:0 MD:Z:19C0T1T0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-520a-5p|0|2|23M|19C0T1T0 -744127-1_5 0 19 34626 255 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 NH:i:5 HI:i:2 XN:Z:hsa-miR-520b-3p|-1|-1|21M|21 -744127-1_5 256 19 34626 1 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:3 XN:Z:hsa-miR-520b-3p|-1|-1|21M|21 -120532-2_3 0 19 34627 255 22M * 0 0 AAAGTGCTTCCTTTTAGAGGGT * MD:Z:22 NM:i:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-520b-3p|0|1|22M|22 -744127-1_5 0 19 40865 255 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 NH:i:5 HI:i:4 XN:Z:hsa-miR-520c-3p|-1|-2|21M|21 -744127-1_5 256 19 40865 1 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:5 XN:Z:hsa-miR-520c-3p|-1|-2|21M|21 -120532-2_3 256 19 40866 1 22M * 0 0 AAAGTGCTTCCTTTTAGAGGGT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-520c-3p|0|0|22M|22 -120532-2_3 0 19 40866 255 22M * 0 0 AAAGTGCTTCCTTTTAGAGGGT * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-520c-3p|0|0|22M|22 -120527-2_9 0 19 40828 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:4 XN:Z:hsa-miR-520c-5p|0|-1|21M|20T -120527-2_9 256 19 40828 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:5 XN:Z:hsa-miR-520c-5p|0|-1|21M|20T0 -95680-3_9 256 19 40828 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:4 XN:Z:hsa-miR-520c-5p|0|-1|21M|21 -95680-3_9 0 19 40828 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:5 XN:Z:hsa-miR-520c-5p|0|-1|21M|21 -270379-1_5 256 19 40828 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:3 XN:Z:hsa-miR-520c-5p|0|-1|21M|3T16T0 -139675-2_9 256 19 40828 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:4 XN:Z:hsa-miR-520c-5p|0|-2|20M|20 -139675-2_9 0 19 40828 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:5 XN:Z:hsa-miR-520c-5p|0|-2|20M|20 -531738-1_9 256 19 40828 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:4 XN:Z:hsa-miR-520c-5p|0|-3|19M|19 -531738-1_9 0 19 40828 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:5 XN:Z:hsa-miR-520c-5p|0|-3|19M|19 -270381-1_7 256 19 40828 1 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:7 HI:i:3 XN:Z:hsa-miR-520c-5p|0|0|22M|22 -270381-1_7 0 19 40828 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 NH:i:7 HI:i:4 XN:Z:hsa-miR-520c-5p|0|0|22M|22 -361022-1_1 0 19 9124 255 21M * 0 0 AAAGTGCTTCCTTTTTGAGGG * MD:Z:21 NH:i:1 NM:i:0 XN:Z:hsa-miR-520e-3p|0|0|21M|21 -772976-1_1 0 19 9089 1 7M1I9M * 0 0 AAAATGGGAAGCAGTTT * HI:i:0 MD:Z:2G13 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-520e-5p|3|-3|7M1I9M|2G13 -270368-1_3 0 19 55581 255 21M * 0 0 CAAAGTGCTTCCCTTTAGAGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-520g-3p|1|-2|21M|21 -270369-1_1 0 19 55581 255 23M * 0 0 CAAAGTGCTTCCCTTTAGAGTGT * MD:Z:23 NH:i:1 NM:i:0 XN:Z:hsa-miR-520g-3p|1|0|23M|23 -138559-2_2 0 19 55539 1 12M1D2M1D2M1I6M * 0 0 CCCTCTAGAGGAGCCTGTTCTGT * MD:Z:12^A2^A8 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 XN:Z:hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8 -270368-1_3 0 19 75927 255 21M * 0 0 CAAAGTGCTTCCCTTTAGAGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-520h|1|0|21M|21 -270368-1_3 256 19 75927 1 21M * 0 0 CAAAGTGCTTCCCTTTAGAGT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-520h|1|0|21M|21 -270358-1_1 0 19 84624 1 22M * 0 0 AGAATGGTTCCCTTTAGAGTGT * MD:Z:1A20 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:1 HI:i:1 XN:Z:hsa-miR-522-3p|0|0|22M|1A20 -676180-1_6 256 19 84586 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:5 XN:Z:hsa-miR-522-5p|0|-1|21M|19C0T0 -18915-24_11 0 19 84586 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:8 XN:Z:hsa-miR-522-5p|0|-1|21M|21 -18915-24_11 256 19 84586 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:9 XN:Z:hsa-miR-522-5p|0|-1|21M|21 -270361-1_11 0 19 84586 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:9 XN:Z:hsa-miR-522-5p|0|-2|20M|19C -270361-1_11 256 19 84586 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:8 XN:Z:hsa-miR-522-5p|0|-2|20M|19C0 -630277-1_11 256 19 84586 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:8 XN:Z:hsa-miR-522-5p|0|-3|19M|19 -630277-1_11 0 19 84586 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:9 XN:Z:hsa-miR-522-5p|0|-3|19M|19 -67687-4_11 0 19 84586 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:8 XN:Z:hsa-miR-522-5p|0|0|22M|22 -67687-4_11 256 19 84586 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:9 XN:Z:hsa-miR-522-5p|0|0|22M|22 -84523-3_11 256 19 84586 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:8 XN:Z:hsa-miR-522-5p|0|1|23M|23 -84523-3_11 0 19 84586 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:9 XN:Z:hsa-miR-522-5p|0|1|23M|23 -676180-1_6 256 19 31760 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:3 XN:Z:hsa-miR-523-5p|0|-1|21M|19C0T0 -18915-24_11 256 19 31760 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 XN:Z:hsa-miR-523-5p|0|-1|21M|21 -18915-24_11 0 19 31760 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:6 XN:Z:hsa-miR-523-5p|0|-1|21M|21 -270361-1_11 0 19 31760 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:6 XN:Z:hsa-miR-523-5p|0|-2|20M|19C -270361-1_11 256 19 31760 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 XN:Z:hsa-miR-523-5p|0|-2|20M|19C0 -630277-1_11 256 19 31760 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 XN:Z:hsa-miR-523-5p|0|-3|19M|19 -630277-1_11 0 19 31760 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:6 XN:Z:hsa-miR-523-5p|0|-3|19M|19 -67687-4_11 256 19 31760 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 XN:Z:hsa-miR-523-5p|0|0|22M|22 -67687-4_11 0 19 31760 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:6 XN:Z:hsa-miR-523-5p|0|0|22M|22 -84523-3_11 0 19 31760 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:5 XN:Z:hsa-miR-523-5p|0|1|23M|23 -84523-3_11 256 19 31760 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:6 XN:Z:hsa-miR-523-5p|0|1|23M|23 -270375-1_1 0 19 44377 255 21M * 0 0 CTACAAAGGGAAGCACTTTCT * MD:Z:21 NH:i:1 NM:i:0 XN:Z:hsa-miR-524-5p|0|-1|21M|21 -270376-1_1 0 19 44377 255 20M * 0 0 CTACAAAGGGAAGCACTTTC * MD:Z:20 NH:i:1 NM:i:0 XN:Z:hsa-miR-524-5p|0|-2|20M|20 -57516-5_1 0 19 30907 255 20M * 0 0 CTCCAGAGGGATGCACTTTC * MD:Z:20 NH:i:1 NM:i:0 XN:Z:hsa-miR-525-5p|0|-1|20M|20 -102026-3_1 0 19 30907 255 21M * 0 0 CTCCAGAGGGATGCACTTTCT * MD:Z:21 NH:i:1 NM:i:0 XN:Z:hsa-miR-525-5p|0|0|21M|21 -120527-2_9 0 19 39626 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:3 XN:Z:hsa-miR-526a-5p|0|-1|21M|20T -120527-2_9 0 19 60288 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:7 XN:Z:hsa-miR-526a-5p|0|-1|21M|20T -120527-2_9 256 19 39626 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:2 XN:Z:hsa-miR-526a-5p|0|-1|21M|20T0 -120527-2_9 256 19 60288 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:6 XN:Z:hsa-miR-526a-5p|0|-1|21M|20T0 -95680-3_9 256 19 39626 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:2 XN:Z:hsa-miR-526a-5p|0|-1|21M|21 -95680-3_9 0 19 39626 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:3 XN:Z:hsa-miR-526a-5p|0|-1|21M|21 -95680-3_9 256 19 60288 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:6 XN:Z:hsa-miR-526a-5p|0|-1|21M|21 -95680-3_9 0 19 60288 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:7 XN:Z:hsa-miR-526a-5p|0|-1|21M|21 -270379-1_5 256 19 39626 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:2 XN:Z:hsa-miR-526a-5p|0|-1|21M|3T16T0 -270379-1_5 256 19 60288 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:4 XN:Z:hsa-miR-526a-5p|0|-1|21M|3T16T0 -139675-2_9 0 19 39626 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:2 XN:Z:hsa-miR-526a-5p|0|-2|20M|20 -139675-2_9 256 19 39626 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:3 XN:Z:hsa-miR-526a-5p|0|-2|20M|20 -139675-2_9 0 19 60288 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:6 XN:Z:hsa-miR-526a-5p|0|-2|20M|20 -139675-2_9 256 19 60288 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:7 XN:Z:hsa-miR-526a-5p|0|-2|20M|20 -531738-1_9 0 19 39626 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:2 XN:Z:hsa-miR-526a-5p|0|-3|19M|19 -531738-1_9 256 19 39626 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:3 XN:Z:hsa-miR-526a-5p|0|-3|19M|19 -531738-1_9 0 19 60288 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:6 XN:Z:hsa-miR-526a-5p|0|-3|19M|19 -531738-1_9 256 19 60288 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:7 XN:Z:hsa-miR-526a-5p|0|-3|19M|19 -270381-1_7 0 19 39626 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 NH:i:7 HI:i:1 XN:Z:hsa-miR-526a-5p|0|0|22M|22 -270381-1_7 256 19 39626 1 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:7 HI:i:2 XN:Z:hsa-miR-526a-5p|0|0|22M|22 -270381-1_7 0 19 60288 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 NH:i:7 HI:i:5 XN:Z:hsa-miR-526a-5p|0|0|22M|22 +@PG ID:samtools.3 PN:samtools PP:samtools.2 VN:1.16.1 CL:samtools sort -t XN -O SAM results/test_lib/mirna_intersecting_tag.sam +256497-1_1 0 19 9096 1 4M1I9M1I2M * 0 0 AAGCCAGTTTCTGTCTG * HI:i:0 MD:Z:15 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 XN:Z: +391978-1_2 256 19 12384 1 3M1I2M1I14M * 0 0 AAGCAACAGCACTTTCTGTAG * MD:Z:17T1 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 XN:Z: +391978-1_2 0 19 18390 1 3M1I2M1I14M * 0 0 AAGCAACAGCACTTTCTGTAG * MD:Z:17T1 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 XN:Z: +705321-1_1 0 19 24304 1 16M * 0 0 CTTTGGACTGTTTCTG * MD:Z:14G1 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:1 HI:i:1 XN:Z: +615330-1_1 0 19 42114 1 4M1I16M * 0 0 TCACAACTCTGGAGGGAAGCA * HI:i:0 MD:Z:1G2T15 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 XN:Z: +623283-1_1 0 19 42116 1 2M1I16M * 0 0 ACAACTCTGGAGGGAAGCA * HI:i:0 MD:Z:2T15 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 XN:Z: +445515-1_1 0 19 53506 1 9M1D7M * 0 0 AAGAAAGTGTTCTCTA * HI:i:0 MD:Z:9^C6T0 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 XN:Z: +138559-2_2 256 19 75885 1 12M1D2M1D2M1I6M * 0 0 CCCTCTAGAGGAGCCTGTTCTGT * MD:Z:12^A2^A8 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 XN:Z: +641705-1_1 0 19 121288 1 9M1I6M * 0 0 TGGAAAGTGGCTGAGA * HI:i:0 MD:Z:12C2 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 XN:Z: +709268-1_1 0 19 5338 255 21M * 0 0 TCAAAACTGAGGGGCATTTTC * MD:Z:21 NH:i:1 NM:i:0 XN:Z:hsa-miR-1323|0|-1|21M|21|TCAAAACTGAGGGGCATTTTC +528546-1_1 0 19 5338 255 22M * 0 0 TCAAAACTGAGGGGCATTTTCT * MD:Z:22 NH:i:1 NM:i:0 XN:Z:hsa-miR-1323|0|0|22M|22|TCAAAACTGAGGGGCATTTTCT +270342-1_1 0 19 121040 255 20M * 0 0 ACTCAAACTGTGGGGGCACT * MD:Z:20 NH:i:1 NM:i:0 XN:Z:hsa-miR-371a-5p|0|0|20M|20|ACTCAAACTGTGGGGGCACT +840419-1_1 0 19 121040 1 23M * 0 0 ACTCAAACTGTGGGGGCCCTTAG * HI:i:0 MD:Z:17A3T0C0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-371a-5p|0|3|23M|17A3T0C0|ACTCAAACTGTGGGGGCACTTAG +120522-2_1 16 19 121038 255 22M * 0 0 GCACTCAAACTGTGGGGGCACT * MD:Z:22 NH:i:1 NM:i:0 XN:Z:hsa-miR-371b-3p|0|-1|22M|22|GCACTCAAACTGTGGGGGCACT +299969-1_1 0 19 121291 1 22M * 0 0 CGAGCGCTGCGACATTTGAGCG * HI:i:0 MD:Z:0A0A2T17 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-372-3p|0|-1|22M|0A0A2T17|CGAGCGCTGCGACATTTGAGCG +67825-4_1 0 19 121291 255 22M * 0 0 AAAGTGCTGCGACATTTGAGCG * MD:Z:22 NH:i:1 NM:i:0 XN:Z:hsa-miR-372-3p|0|-1|22M|22|AAAGTGCTGCGACATTTGAGCG +90583-3_1 0 19 121291 255 22M * 0 0 AAATTGCTGCGACATTTGAGCG * MD:Z:3G18 NH:i:1 NM:i:1 XN:Z:hsa-miR-372-3p|0|-1|22M|3G18|AAATTGCTGCGACATTTGAGCG +629861-1_1 0 19 121291 1 23M * 0 0 AGAGTGCTGCGACATTTGAGCGA * HI:i:0 MD:Z:1A20T0 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-372-3p|0|0|23M|1A20T0|AGAGTGCTGCGACATTTGAGCGA +120521-2_1 0 19 121291 255 23M * 0 0 AAAGTGCTGCGACATTTGAGCGA * MD:Z:22T NH:i:1 NM:i:1 XN:Z:hsa-miR-372-3p|0|0|23M|22T|AAAGTGCTGCGACATTTGAGCGA +739110-1_1 0 19 121291 255 23M * 0 0 AAAGTGCTGCGACATTTGAGCGT * MD:Z:23 NH:i:1 NM:i:0 XN:Z:hsa-miR-372-3p|0|0|23M|23|AAAGTGCTGCGACATTTGAGCGT +270338-1_1 0 19 121291 255 23M * 0 0 AAATTGCTGCGACATTTGAGCGT * MD:Z:3G19 NH:i:1 NM:i:1 XN:Z:hsa-miR-372-3p|0|0|23M|3G19|AAATTGCTGCGACATTTGAGCGT +267649-1_1 0 19 121292 255 21M1I1M * 0 0 AAGTGCTGCGACATTTGAGCGAT * MD:Z:23 NH:i:1 NM:i:1 XN:Z:hsa-miR-372-3p|1|0|21M1I1M|23|AAGTGCTGCGACATTTGAGCGAT +313132-1_1 0 19 121292 255 22M * 0 0 AAGTGCTGCGACATTTGAGCGT * MD:Z:22 NH:i:1 NM:i:0 XN:Z:hsa-miR-372-3p|1|0|22M|22|AAGTGCTGCGACATTTGAGCGT +270337-1_1 0 19 121292 1 4M1I18M * 0 0 AACTTGCTGCGACATTTGAGCGT * HI:i:0 MD:Z:2G19 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-372-3p|1|0|4M1I18M|2G19|AACTTGCTGCGACATTTGAGCGT +188149-2_1 0 19 122108 255 23M * 0 0 GAAGTGCTTCGATTTTGGGGTGT * MD:Z:23 NH:i:1 NM:i:0 XN:Z:hsa-miR-373-3p|0|0|23M|23|GAAGTGCTTCGATTTTGGGGTGT +270393-1_1 0 19 7590 255 23M * 0 0 TTTCAAGCCAGGGGGCGTTTTTC * MD:Z:23 NH:i:1 NM:i:0 XN:Z:hsa-miR-498-5p|0|0|23M|23|TTTCAAGCCAGGGGGCGTTTTTC +610105-1_2 256 19 87 1 3M1I17M * 0 0 GAACAGTGCTGTGATAACTGA * MD:Z:11C3G4 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 XN:Z:hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4|GAACAGTGCTGTGATAACTGA +610105-1_2 0 19 2571 1 3M1I17M * 0 0 GAACAGTGCTGTGATAACTGA * MD:Z:11C3G4 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 XN:Z:hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4|GAACAGTGCTGTGATAACTGA +645839-1_3 0 19 89 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGA * MD:Z:20T NM:i:1 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-3p|0|-1|21M|20T|AAGTGCTGTCATAGCTGAGGA +645839-1_3 0 19 2573 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGA * MD:Z:20T NM:i:1 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-3p|0|-1|21M|20T|AAGTGCTGTCATAGCTGAGGA +645839-1_3 256 19 89 1 21M * 0 0 AAGTGCTGTCATAGCTGAGGA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-3p|0|-1|21M|20T0|AAGTGCTGTCATAGCTGAGGA +67830-4_3 256 19 89 1 21M * 0 0 AAGTGCTGTCATAGCTGAGGT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-3p|0|-1|21M|21|AAGTGCTGTCATAGCTGAGGT +67830-4_3 0 19 89 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-3p|0|-1|21M|21|AAGTGCTGTCATAGCTGAGGT +67830-4_3 0 19 2573 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-3p|0|-1|21M|21|AAGTGCTGTCATAGCTGAGGT +535182-1_3 256 19 89 1 21M * 0 0 AAGTGCTTTCATAGCTGAGGT * MD:Z:7G13 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-3p|0|-1|21M|7G13|AAGTGCTTTCATAGCTGAGGT +535182-1_3 0 19 89 255 21M * 0 0 AAGTGCTTTCATAGCTGAGGT * MD:Z:7G13 NM:i:1 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-3p|0|-1|21M|7G13|AAGTGCTTTCATAGCTGAGGT +535182-1_3 0 19 2573 255 21M * 0 0 AAGTGCTTTCATAGCTGAGGT * MD:Z:7G13 NM:i:1 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-3p|0|-1|21M|7G13|AAGTGCTTTCATAGCTGAGGT +766380-1_3 0 19 89 255 20M * 0 0 AAGTGCTGTCATCGCTGAGG * MD:Z:12A7 NM:i:1 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-3p|0|-2|20M|12A7|AAGTGCTGTCATCGCTGAGG +766380-1_3 256 19 89 1 20M * 0 0 AAGTGCTGTCATCGCTGAGG * MD:Z:12A7 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-3p|0|-2|20M|12A7|AAGTGCTGTCATCGCTGAGG +766380-1_3 0 19 2573 255 20M * 0 0 AAGTGCTGTCATCGCTGAGG * MD:Z:12A7 NM:i:1 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-3p|0|-2|20M|12A7|AAGTGCTGTCATCGCTGAGG +67831-4_3 0 19 89 255 20M * 0 0 AAGTGCTGTCATAGCTGAGG * MD:Z:20 NM:i:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-3p|0|-2|20M|20|AAGTGCTGTCATAGCTGAGG +67831-4_3 256 19 89 1 20M * 0 0 AAGTGCTGTCATAGCTGAGG * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-3p|0|-2|20M|20|AAGTGCTGTCATAGCTGAGG +67831-4_3 0 19 2573 255 20M * 0 0 AAGTGCTGTCATAGCTGAGG * MD:Z:20 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-3p|0|-2|20M|20|AAGTGCTGTCATAGCTGAGG +270395-1_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATCGCTGAGGTC * MD:Z:12A9 NM:i:1 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-3p|0|0|22M|12A9|AAGTGCTGTCATCGCTGAGGTC +270395-1_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATCGCTGAGGTC * MD:Z:12A9 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-3p|0|0|22M|12A9|AAGTGCTGTCATCGCTGAGGTC +270395-1_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATCGCTGAGGTC * MD:Z:12A9 NM:i:1 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-3p|0|0|22M|12A9|AAGTGCTGTCATCGCTGAGGTC +773136-1_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATAGCTGCGGTC * MD:Z:17A4 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-3p|0|0|22M|17A4|AAGTGCTGTCATAGCTGCGGTC +773136-1_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATAGCTGCGGTC * MD:Z:17A4 NM:i:1 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-3p|0|0|22M|17A4|AAGTGCTGTCATAGCTGCGGTC +773136-1_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATAGCTGCGGTC * MD:Z:17A4 NM:i:1 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-3p|0|0|22M|17A4|AAGTGCTGTCATAGCTGCGGTC +102065-3_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTT * MD:Z:21C NM:i:1 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-3p|0|0|22M|21C|AAGTGCTGTCATAGCTGCGGTT +102065-3_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTT * MD:Z:21C NM:i:1 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-3p|0|0|22M|21C|AAGTGCTGTCATAGCTGCGGTT +102065-3_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATAGCTGAGGTT * MD:Z:21C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-3p|0|0|22M|21C0|AAGTGCTGTCATAGCTGCGGTT +37896-9_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATAGCTGAGGTC * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-3p|0|0|22M|22|AAGTGCTGTCATAGCTGAGGTC +37896-9_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTC * MD:Z:22 NM:i:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-3p|0|0|22M|22|AAGTGCTGTCATAGCTGAGGTC +37896-9_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTC * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-3p|0|0|22M|22|AAGTGCTGTCATAGCTGAGGTC +334943-1_2 256 19 89 1 23M * 0 0 AAGTGCTGTCATAGCTGAGGTAG * MD:Z:21C0C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 XN:Z:hsa-miR-512-3p|0|1|23M|21C0C0|AAGTGCTGTCATAGCTGAGGTAG +334943-1_2 0 19 2573 1 23M * 0 0 AAGTGCTGTCATAGCTGAGGTAG * MD:Z:21C0C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 XN:Z:hsa-miR-512-3p|0|1|23M|21C0C0|AAGTGCTGTCATAGCTGAGGTAG +270396-1_3 0 19 89 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCT * MD:Z:22C NM:i:1 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT +270401-1_2 0 19 89 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCA * MD:Z:22C NM:i:1 NH:i:2 HI:i:1 XN:Z:hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA +270396-1_3 0 19 2573 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCT * MD:Z:22C NM:i:1 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT +270401-1_2 0 19 2573 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCA * MD:Z:22C NM:i:1 NH:i:2 HI:i:2 XN:Z:hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA +270396-1_3 256 19 89 1 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCT * MD:Z:22C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-3p|0|1|23M|22C0|AAGTGCTGTCATAGCTGAGGTCT +673650-1_2 256 19 89 1 23M * 0 0 AAGAGCTGTCATAGCTGAGGTCT * MD:Z:3T18C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 XN:Z:hsa-miR-512-3p|0|1|23M|3T18C0|AAGAGCTGTCATAGCTGAGGTCT +673650-1_2 0 19 2573 1 23M * 0 0 AAGAGCTGTCATAGCTGAGGTCT * MD:Z:3T18C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 XN:Z:hsa-miR-512-3p|0|1|23M|3T18C0|AAGAGCTGTCATAGCTGAGGTCT +150819-2_3 256 19 53 1 21M * 0 0 ACTCAGCCTTGAGGGCACTTT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-5p|1|-1|21M|21|ACTCAGCCTTGAGGGCACTTT +150819-2_3 0 19 53 255 21M * 0 0 ACTCAGCCTTGAGGGCACTTT * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-5p|1|-1|21M|21|ACTCAGCCTTGAGGGCACTTT +150819-2_3 0 19 2537 255 21M * 0 0 ACTCAGCCTTGAGGGCACTTT * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-5p|1|-1|21M|21|ACTCAGCCTTGAGGGCACTTT +270402-1_3 0 19 53 255 20M * 0 0 ACTCAGCCTTGAGGGCACTT * MD:Z:20 NM:i:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-5p|1|-2|20M|20|ACTCAGCCTTGAGGGCACTT +270402-1_3 256 19 53 1 20M * 0 0 ACTCAGCCTTGAGGGCACTT * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-5p|1|-2|20M|20|ACTCAGCCTTGAGGGCACTT +270402-1_3 0 19 2537 255 20M * 0 0 ACTCAGCCTTGAGGGCACTT * MD:Z:20 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-5p|1|-2|20M|20|ACTCAGCCTTGAGGGCACTT +752875-1_3 256 19 53 1 22M * 0 0 ACTCAGCCTTGAGGGCACTTTC * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-512-5p|1|0|22M|22|ACTCAGCCTTGAGGGCACTTTC +752875-1_3 0 19 53 255 22M * 0 0 ACTCAGCCTTGAGGGCACTTTC * MD:Z:22 NM:i:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-512-5p|1|0|22M|22|ACTCAGCCTTGAGGGCACTTTC +752875-1_3 0 19 2537 255 22M * 0 0 ACTCAGCCTTGAGGGCACTTTC * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-512-5p|1|0|22M|22|ACTCAGCCTTGAGGGCACTTTC +369314-1_3 0 19 12413 255 21M * 0 0 GAGTGCCTTCTTTTGGAGCGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-515-3p|0|-1|21M|21|GAGTGCCTTCTTTTGGAGCGT +369314-1_3 256 19 12413 1 21M * 0 0 GAGTGCCTTCTTTTGGAGCGT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-515-3p|0|-1|21M|21|GAGTGCCTTCTTTTGGAGCGT +369314-1_3 0 19 18419 255 21M * 0 0 GAGTGCCTTCTTTTGGAGCGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-515-3p|0|-1|21M|21|GAGTGCCTTCTTTTGGAGCGT +54840-6_3 0 19 90116 255 22M * 0 0 TTCTCGAGGAAAGAAGCACTTT * MD:Z:22 NM:i:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-516a-5p|0|-1|22M|22|TTCTCGAGGAAAGAAGCACTTT +54840-6_3 256 19 90116 1 22M * 0 0 TTCTCGAGGAAAGAAGCACTTT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-516a-5p|0|-1|22M|22|TTCTCGAGGAAAGAAGCACTTT +54840-6_3 0 19 94508 255 22M * 0 0 TTCTCGAGGAAAGAAGCACTTT * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-516a-5p|0|-1|22M|22|TTCTCGAGGAAAGAAGCACTTT +423555-1_3 256 19 90117 1 21M * 0 0 TCTCGAGGAAAGAAGCACTTT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-516a-5p|1|-1|21M|21|TCTCGAGGAAAGAAGCACTTT +423555-1_3 0 19 90117 255 21M * 0 0 TCTCGAGGAAAGAAGCACTTT * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-516a-5p|1|-1|21M|21|TCTCGAGGAAAGAAGCACTTT +423555-1_3 0 19 94509 255 21M * 0 0 TCTCGAGGAAAGAAGCACTTT * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-516a-5p|1|-1|21M|21|TCTCGAGGAAAGAAGCACTTT +270365-1_3 0 19 58817 255 19M * 0 0 ATCTGGAGGTAAGAAGCAA * MD:Z:18C NM:i:1 NH:i:3 HI:i:2 XN:Z:hsa-miR-516b-5p|0|-3|19M|18C|ATCTGGAGGTAAGAAGCAA +270365-1_3 0 19 70220 255 19M * 0 0 ATCTGGAGGTAAGAAGCAA * MD:Z:18C NM:i:1 NH:i:3 HI:i:3 XN:Z:hsa-miR-516b-5p|0|-3|19M|18C|ATCTGGAGGTAAGAAGCAA +270365-1_3 256 19 58817 1 19M * 0 0 ATCTGGAGGTAAGAAGCAA * MD:Z:18C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-516b-5p|0|-3|19M|18C0|ATCTGGAGGTAAGAAGCAA +270366-1_3 256 19 58817 1 22M * 0 0 ATCTGGAGGTCAGAAGCACTTT * MD:Z:10A11 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-516b-5p|0|0|22M|10A11|ATCTGGAGGTCAGAAGCACTTT +270366-1_3 0 19 58817 255 22M * 0 0 ATCTGGAGGTCAGAAGCACTTT * MD:Z:10A11 NM:i:1 NH:i:3 HI:i:2 XN:Z:hsa-miR-516b-5p|0|0|22M|10A11|ATCTGGAGGTCAGAAGCACTTT +270366-1_3 0 19 70220 255 22M * 0 0 ATCTGGAGGTCAGAAGCACTTT * MD:Z:10A11 NM:i:1 NH:i:3 HI:i:3 XN:Z:hsa-miR-516b-5p|0|0|22M|10A11|ATCTGGAGGTCAGAAGCACTTT +86082-3_3 256 19 58817 1 22M * 0 0 ATCTGGAGGTAAGAAGCACTTT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-516b-5p|0|0|22M|22|ATCTGGAGGTAAGAAGCACTTT +86082-3_3 0 19 58817 255 22M * 0 0 ATCTGGAGGTAAGAAGCACTTT * MD:Z:22 NM:i:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-516b-5p|0|0|22M|22|ATCTGGAGGTAAGAAGCACTTT +86082-3_3 0 19 70220 255 22M * 0 0 ATCTGGAGGTAAGAAGCACTTT * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-516b-5p|0|0|22M|22|ATCTGGAGGTAAGAAGCACTTT +270359-1_5 0 19 45641 255 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T NM:i:1 NH:i:5 HI:i:1 XN:Z:hsa-miR-517-5p|-1|0|23M|22T|CCCTCTAGATGGAAGCACTGTCA +270359-1_5 0 19 54440 255 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T NM:i:1 NH:i:5 HI:i:2 XN:Z:hsa-miR-517-5p|-1|0|23M|22T|CCCTCTAGATGGAAGCACTGTCA +270359-1_5 0 19 74691 255 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T NM:i:1 NH:i:5 HI:i:4 XN:Z:hsa-miR-517-5p|-1|0|23M|22T|CCCTCTAGATGGAAGCACTGTCA +270359-1_5 256 19 54440 1 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:3 XN:Z:hsa-miR-517-5p|-1|0|23M|22T0|CCCTCTAGATGGAAGCACTGTCA +270359-1_5 256 19 74691 1 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:5 XN:Z:hsa-miR-517-5p|-1|0|23M|22T0|CCCTCTAGATGGAAGCACTGTCA +752904-1_3 0 19 45646 1 6M1D13M * 0 0 GAGATGAAGCACTGTCTGT * MD:Z:0T5^G13 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-517-5p|4|2|6M1D13M|0T5^G13|GAGATGAAGCACTGTCTGT +752904-1_3 256 19 54445 1 6M1D13M * 0 0 GAGATGAAGCACTGTCTGT * MD:Z:0T5^G13 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-517-5p|4|2|6M1D13M|0T5^G13|GAGATGAAGCACTGTCTGT +752904-1_3 256 19 74696 1 6M1D13M * 0 0 GAGATGAAGCACTGTCTGT * MD:Z:0T5^G13 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-517-5p|4|2|6M1D13M|0T5^G13|GAGATGAAGCACTGTCTGT +105051-3_3 0 19 45646 1 6M1D13M * 0 0 TAGATGAAGCACTGTATGT * MD:Z:6^G9C3 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-517-5p|4|2|6M1D13M|6^G9C3|TAGATGAAGCACTGTATGT +105051-3_3 256 19 54445 1 6M1D13M * 0 0 TAGATGAAGCACTGTATGT * MD:Z:6^G9C3 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-517-5p|4|2|6M1D13M|6^G9C3|TAGATGAAGCACTGTATGT +105051-3_3 256 19 74696 1 6M1D13M * 0 0 TAGATGAAGCACTGTATGT * MD:Z:6^G9C3 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-517-5p|4|2|6M1D13M|6^G9C3|TAGATGAAGCACTGTATGT +120530-2_3 256 19 45681 1 21M * 0 0 ATCGTGCATCCCTTTAGAGTG * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-517a-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG +120530-2_3 0 19 45681 255 21M * 0 0 ATCGTGCATCCCTTTAGAGTG * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-517a-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG +67957-4_3 0 19 45681 255 22M * 0 0 ATCGTGCATCCCTTTAGAGTGT * MD:Z:22 NM:i:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-517a-3p|0|0|22M|22|ATCGTGCATCCCTTTAGAGTGT +67957-4_3 256 19 45681 1 22M * 0 0 ATCGTGCATCCCTTTAGAGTGT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-517a-3p|0|0|22M|22|ATCGTGCATCCCTTTAGAGTGT +120530-2_3 0 19 54478 255 21M * 0 0 ATCGTGCATCCCTTTAGAGTG * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-517b-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG +67957-4_3 0 19 54478 255 22M * 0 0 ATCGTGCATCCCTTTAGAGTGT * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-517b-3p|0|0|22M|22|ATCGTGCATCCCTTTAGAGTGT +447402-1_1 0 19 36147 255 22M * 0 0 CAAAGCGCTCCCCTTTAGAGGT * MD:Z:22 NH:i:1 NM:i:0 XN:Z:hsa-miR-518b|0|0|22M|22|CAAAGCGCTCCCCTTTAGAGGT +270377-1_1 0 19 42119 255 21M * 0 0 CTCTGGAGGGAAGCACTTTCT * MD:Z:21 NH:i:1 NM:i:0 XN:Z:hsa-miR-518c-5p|1|-1|21M|21|CTCTGGAGGGAAGCACTTTCT +751085-1_1 0 19 42119 255 20M * 0 0 CTCTGGAGGGAAGCACTTTA * MD:Z:19C NH:i:1 NM:i:1 XN:Z:hsa-miR-518c-5p|1|-2|20M|19C|CTCTGGAGGGAAGCACTTTA +270378-1_1 0 19 42119 255 22M * 0 0 CTCTGGAGGGAAGCACTTTCTG * MD:Z:22 NH:i:1 NM:i:0 XN:Z:hsa-miR-518c-5p|1|0|22M|22|CTCTGGAGGGAAGCACTTTCTG +120527-2_9 0 19 68252 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:8 XN:Z:hsa-miR-518d-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA +120527-2_9 256 19 68252 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:9 XN:Z:hsa-miR-518d-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA +95680-3_9 0 19 68252 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:8 XN:Z:hsa-miR-518d-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +95680-3_9 256 19 68252 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:9 XN:Z:hsa-miR-518d-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +270379-1_5 256 19 68252 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:5 XN:Z:hsa-miR-518d-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA +139675-2_9 256 19 68252 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:8 XN:Z:hsa-miR-518d-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC +139675-2_9 0 19 68252 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:9 XN:Z:hsa-miR-518d-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC +531738-1_9 256 19 68252 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:8 XN:Z:hsa-miR-518d-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT +531738-1_9 0 19 68252 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:9 XN:Z:hsa-miR-518d-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT +270381-1_7 256 19 68252 1 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:7 HI:i:6 XN:Z:hsa-miR-518d-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTG +270381-1_7 0 19 68252 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 NH:i:7 HI:i:7 XN:Z:hsa-miR-518d-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTG +270360-1_1 0 19 63251 255 21M * 0 0 AAAGCGCTTCCCTTCAGAGTG * MD:Z:21 NH:i:1 NM:i:0 XN:Z:hsa-miR-518e-3p|0|0|21M|21|AAAGCGCTTCCCTTCAGAGTG +676180-1_6 0 19 63213 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:4 XN:Z:hsa-miR-518e-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA +18915-24_11 0 19 63213 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:7 XN:Z:hsa-miR-518e-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +270361-1_11 0 19 63213 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:7 XN:Z:hsa-miR-518e-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA +630277-1_11 0 19 63213 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:7 XN:Z:hsa-miR-518e-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +67687-4_11 0 19 63213 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:7 XN:Z:hsa-miR-518e-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +84523-3_11 0 19 63213 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:7 XN:Z:hsa-miR-518e-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +120527-2_9 0 19 33390 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:1 XN:Z:hsa-miR-518f-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA +95680-3_9 0 19 33390 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:1 XN:Z:hsa-miR-518f-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +270379-1_5 0 19 33390 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:1 XN:Z:hsa-miR-518f-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA +139675-2_9 0 19 33390 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:1 XN:Z:hsa-miR-518f-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC +531738-1_9 0 19 33390 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:1 XN:Z:hsa-miR-518f-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT +347693-1_1 0 19 33390 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTC * MD:Z:22 NH:i:1 NM:i:0 XN:Z:hsa-miR-518f-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTC +270348-1_3 0 19 85809 255 22M * 0 0 AAATTGCATCCTTTTAGAGTGT * MD:Z:3G18 NM:i:1 NH:i:3 HI:i:1 XN:Z:hsa-miR-519a-3p|0|0|22M|3G18|AAATTGCATCCTTTTAGAGTGT +270348-1_3 0 19 95757 255 22M * 0 0 AAATTGCATCCTTTTAGAGTGT * MD:Z:3G18 NM:i:1 NH:i:3 HI:i:2 XN:Z:hsa-miR-519a-3p|0|0|22M|3G18|AAATTGCATCCTTTTAGAGTGT +270348-1_3 256 19 95757 1 22M * 0 0 AAATTGCATCCTTTTAGAGTGT * MD:Z:3G18 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-519a-3p|0|0|22M|3G18|AAATTGCATCCTTTTAGAGTGT +270357-1_1 0 19 85770 255 22M * 0 0 ACTCTAGAGGGAAGCGCTTTCA * MD:Z:21T NH:i:1 NM:i:1 XN:Z:hsa-miR-519a-5p|-1|-1|22M|21T|ACTCTAGAGGGAAGCGCTTTCA +58870-5_1 0 19 85770 255 22M * 0 0 ACTCTAGAGGGAAGCGCTTTCT * MD:Z:22 NH:i:1 NM:i:0 XN:Z:hsa-miR-519a-5p|-1|-1|22M|22|ACTCTAGAGGGAAGCGCTTTCT +270354-1_1 0 19 85770 255 20M * 0 0 ACTCTAGAGGGAAGCGCTTT * MD:Z:20 NH:i:1 NM:i:0 XN:Z:hsa-miR-519a-5p|-1|-3|20M|20|ACTCTAGAGGGAAGCGCTTT +676180-1_6 256 19 85771 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:6 XN:Z:hsa-miR-519a-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA +18915-24_11 0 19 85771 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:10 XN:Z:hsa-miR-519a-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +18915-24_11 256 19 85771 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 XN:Z:hsa-miR-519a-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +270361-1_11 0 19 85771 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:10 XN:Z:hsa-miR-519a-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA +270361-1_11 256 19 85771 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 XN:Z:hsa-miR-519a-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA +630277-1_11 0 19 85771 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:10 XN:Z:hsa-miR-519a-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +630277-1_11 256 19 85771 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 XN:Z:hsa-miR-519a-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +67687-4_11 256 19 85771 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:10 XN:Z:hsa-miR-519a-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +67687-4_11 0 19 85771 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:11 XN:Z:hsa-miR-519a-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +84523-3_11 0 19 85771 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:10 XN:Z:hsa-miR-519a-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +84523-3_11 256 19 85771 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 XN:Z:hsa-miR-519a-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +676180-1_6 256 19 28585 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:2 XN:Z:hsa-miR-519b-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA +18915-24_11 256 19 28585 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:3 XN:Z:hsa-miR-519b-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +18915-24_11 0 19 28585 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:4 XN:Z:hsa-miR-519b-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +270361-1_11 0 19 28585 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:3 XN:Z:hsa-miR-519b-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA +270361-1_11 256 19 28585 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:4 XN:Z:hsa-miR-519b-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA +630277-1_11 256 19 28585 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:3 XN:Z:hsa-miR-519b-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +630277-1_11 0 19 28585 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:4 XN:Z:hsa-miR-519b-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +67687-4_11 256 19 28585 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:3 XN:Z:hsa-miR-519b-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +67687-4_11 0 19 28585 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:4 XN:Z:hsa-miR-519b-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +84523-3_11 0 19 28585 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:3 XN:Z:hsa-miR-519b-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +84523-3_11 256 19 28585 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:4 XN:Z:hsa-miR-519b-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +676180-1_6 256 19 19844 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:1 XN:Z:hsa-miR-519c-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA +18915-24_11 0 19 19844 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:1 XN:Z:hsa-miR-519c-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +18915-24_11 256 19 19844 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:2 XN:Z:hsa-miR-519c-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +270361-1_11 0 19 19844 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:2 XN:Z:hsa-miR-519c-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA +270361-1_11 256 19 19844 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:1 XN:Z:hsa-miR-519c-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA +630277-1_11 0 19 19844 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:1 XN:Z:hsa-miR-519c-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +630277-1_11 256 19 19844 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:2 XN:Z:hsa-miR-519c-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +67687-4_11 0 19 19844 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:1 XN:Z:hsa-miR-519c-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +67687-4_11 256 19 19844 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:2 XN:Z:hsa-miR-519c-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +84523-3_11 256 19 19844 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:1 XN:Z:hsa-miR-519c-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +84523-3_11 0 19 19844 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:2 XN:Z:hsa-miR-519c-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +270371-1_1 0 19 46760 255 21M * 0 0 CAAAGTGCCTCCCTTTAGAGT * MD:Z:21 NH:i:1 NM:i:0 XN:Z:hsa-miR-519d-3p|0|-1|21M|21|CAAAGTGCCTCCCTTTAGAGT +153079-2_1 0 19 46760 255 20M * 0 0 CAAAGTGCCTCCCTTTAGAG * MD:Z:20 NH:i:1 NM:i:0 XN:Z:hsa-miR-519d-3p|0|-2|20M|20|CAAAGTGCCTCCCTTTAGAG +67829-4_1 0 19 24293 255 22M * 0 0 AAAGTGCTTCCCTTTGGACTGT * MD:Z:22 NH:i:1 NM:i:0 XN:Z:hsa-miR-520a-3p|0|0|22M|22|AAAGTGCTTCCCTTTGGACTGT +655140-1_1 0 19 24293 255 22M * 0 0 AAATTGCTTCCCTTTGGACTGT * MD:Z:3G18 NH:i:1 NM:i:1 XN:Z:hsa-miR-520a-3p|0|0|22M|3G18|AAAGTGCTTCCCTTTGGACTGT +485300-1_1 0 19 24293 255 23M * 0 0 AAAGTGCTTCCCTTTGGACTGTA * MD:Z:22T NH:i:1 NM:i:1 XN:Z:hsa-miR-520a-3p|0|1|23M|22T|AAAGTGCTTCCCTTTGGACTGTA +729311-1_1 0 19 24255 1 21M * 0 0 CTCCAGAGGGAAGTACTTTGA * HI:i:0 MD:Z:19C0T0 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-520a-5p|0|0|21M|19C0T0|CTCCAGAGGGAAGTACTTTGA +720817-1_1 0 19 24255 255 21M * 0 0 CTCCAGAGGGAAGTACTTTCG * MD:Z:20T NM:i:1 NH:i:1 HI:i:1 XN:Z:hsa-miR-520a-5p|0|0|21M|20T|CTCCAGAGGGAAGTACTTTCG +120535-2_1 0 19 24255 255 21M * 0 0 CTCCAGAGGGAAGTACTTTCT * MD:Z:21 NH:i:1 NM:i:0 XN:Z:hsa-miR-520a-5p|0|0|21M|21|CTCCAGAGGGAAGTACTTTCT +228043-1_1 0 19 24255 1 19M1D2M * 0 0 CTCCAGAGGGAAGTACTTTAG * HI:i:0 MD:Z:19^C0T1 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1|CTCCAGAGGGAAGTACTTTAG +609803-1_1 0 19 24255 1 19M1I3M * 0 0 CTCCAGAGGGAAGTACTTTGAAG * HI:i:0 MD:Z:19C0T1 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-520a-5p|0|1|19M1I3M|19C0T1|CTCCAGAGGGAAGTACTTTGAAG +101076-3_1 0 19 24255 1 19M1D3M * 0 0 CTCCAGAGGGAAGTACTTTAGA * HI:i:0 MD:Z:19^C0T1T0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0|CTCCAGAGGGAAGTACTTTAGA +127441-2_1 0 19 24255 1 19M1D3M * 0 0 CTCCAGAGGGAAGTACTTTTAA * HI:i:0 MD:Z:19^C1G0T0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0|CTCCAGAGGGAAGTACTTTTAA +103161-3_1 0 19 24255 1 20M1D2M * 0 0 CTCCAGAGGGAAGTACTTTCGA * HI:i:0 MD:Z:20^T1T0 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0|CTCCAGAGGGAAGTACTTTCGA +478794-1_1 0 19 24255 1 23M * 0 0 CTCCAGAGGGAAGTACTTTAAGA * HI:i:0 MD:Z:19C0T1T0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-520a-5p|0|2|23M|19C0T1T0|CTCCAGAGGGAAGTACTTTAAGA +744127-1_5 0 19 34626 255 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 NH:i:5 HI:i:2 XN:Z:hsa-miR-520b-3p|-1|-1|21M|21|GAAAGTGCTTCCTTTTAGAGG +744127-1_5 256 19 34626 1 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:3 XN:Z:hsa-miR-520b-3p|-1|-1|21M|21|GAAAGTGCTTCCTTTTAGAGG +120532-2_3 0 19 34627 255 22M * 0 0 AAAGTGCTTCCTTTTAGAGGGT * MD:Z:22 NM:i:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-520b-3p|0|1|22M|22|AAAGTGCTTCCTTTTAGAGGGT +744127-1_5 0 19 40865 255 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 NH:i:5 HI:i:4 XN:Z:hsa-miR-520c-3p|-1|-2|21M|21|GAAAGTGCTTCCTTTTAGAGG +744127-1_5 256 19 40865 1 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:5 XN:Z:hsa-miR-520c-3p|-1|-2|21M|21|GAAAGTGCTTCCTTTTAGAGG +120532-2_3 256 19 40866 1 22M * 0 0 AAAGTGCTTCCTTTTAGAGGGT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-520c-3p|0|0|22M|22|AAAGTGCTTCCTTTTAGAGGGT +120532-2_3 0 19 40866 255 22M * 0 0 AAAGTGCTTCCTTTTAGAGGGT * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-520c-3p|0|0|22M|22|AAAGTGCTTCCTTTTAGAGGGT +120527-2_9 0 19 40828 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:4 XN:Z:hsa-miR-520c-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA +120527-2_9 256 19 40828 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:5 XN:Z:hsa-miR-520c-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA +95680-3_9 256 19 40828 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:4 XN:Z:hsa-miR-520c-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +95680-3_9 0 19 40828 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:5 XN:Z:hsa-miR-520c-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +270379-1_5 256 19 40828 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:3 XN:Z:hsa-miR-520c-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA +139675-2_9 256 19 40828 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:4 XN:Z:hsa-miR-520c-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC +139675-2_9 0 19 40828 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:5 XN:Z:hsa-miR-520c-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC +531738-1_9 256 19 40828 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:4 XN:Z:hsa-miR-520c-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT +531738-1_9 0 19 40828 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:5 XN:Z:hsa-miR-520c-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT +270381-1_7 256 19 40828 1 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:7 HI:i:3 XN:Z:hsa-miR-520c-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTG +270381-1_7 0 19 40828 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 NH:i:7 HI:i:4 XN:Z:hsa-miR-520c-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTG +361022-1_1 0 19 9124 255 21M * 0 0 AAAGTGCTTCCTTTTTGAGGG * MD:Z:21 NH:i:1 NM:i:0 XN:Z:hsa-miR-520e-3p|0|0|21M|21|AAAGTGCTTCCTTTTTGAGGG +772976-1_1 0 19 9089 1 7M1I9M * 0 0 AAAATGGGAAGCAGTTT * HI:i:0 MD:Z:2G13 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 XN:Z:hsa-miR-520e-5p|3|-3|7M1I9M|2G13|AAAATGGGAAGCAGTTT +270368-1_3 0 19 55581 255 21M * 0 0 CAAAGTGCTTCCCTTTAGAGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:1 XN:Z:hsa-miR-520g-3p|1|-2|21M|21|CAAAGTGCTTCCCTTTAGAGT +270369-1_1 0 19 55581 255 23M * 0 0 CAAAGTGCTTCCCTTTAGAGTGT * MD:Z:23 NH:i:1 NM:i:0 XN:Z:hsa-miR-520g-3p|1|0|23M|23|CAAAGTGCTTCCCTTTAGAGTGT +138559-2_2 0 19 55539 1 12M1D2M1D2M1I6M * 0 0 CCCTCTAGAGGAGCCTGTTCTGT * MD:Z:12^A2^A8 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 XN:Z:hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8|CCCTCTAGAGGAGCCTGTTCTGT +270368-1_3 0 19 75927 255 21M * 0 0 CAAAGTGCTTCCCTTTAGAGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 XN:Z:hsa-miR-520h|1|0|21M|21|CAAAGTGCTTCCCTTTAGAGT +270368-1_3 256 19 75927 1 21M * 0 0 CAAAGTGCTTCCCTTTAGAGT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:3 XN:Z:hsa-miR-520h|1|0|21M|21|CAAAGTGCTTCCCTTTAGAGT +270358-1_1 0 19 84624 1 22M * 0 0 AGAATGGTTCCCTTTAGAGTGT * MD:Z:1A20 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:1 HI:i:1 XN:Z:hsa-miR-522-3p|0|0|22M|1A20|AGAATGGTTCCCTTTAGAGTGT +676180-1_6 256 19 84586 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:5 XN:Z:hsa-miR-522-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA +18915-24_11 0 19 84586 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:8 XN:Z:hsa-miR-522-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +18915-24_11 256 19 84586 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:9 XN:Z:hsa-miR-522-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +270361-1_11 0 19 84586 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:9 XN:Z:hsa-miR-522-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA +270361-1_11 256 19 84586 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:8 XN:Z:hsa-miR-522-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA +630277-1_11 256 19 84586 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:8 XN:Z:hsa-miR-522-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +630277-1_11 0 19 84586 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:9 XN:Z:hsa-miR-522-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +67687-4_11 0 19 84586 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:8 XN:Z:hsa-miR-522-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +67687-4_11 256 19 84586 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:9 XN:Z:hsa-miR-522-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +84523-3_11 256 19 84586 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:8 XN:Z:hsa-miR-522-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +84523-3_11 0 19 84586 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:9 XN:Z:hsa-miR-522-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +676180-1_6 256 19 31760 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:3 XN:Z:hsa-miR-523-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA +18915-24_11 256 19 31760 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 XN:Z:hsa-miR-523-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +18915-24_11 0 19 31760 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:6 XN:Z:hsa-miR-523-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +270361-1_11 0 19 31760 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:6 XN:Z:hsa-miR-523-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA +270361-1_11 256 19 31760 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 XN:Z:hsa-miR-523-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA +630277-1_11 256 19 31760 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 XN:Z:hsa-miR-523-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +630277-1_11 0 19 31760 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:6 XN:Z:hsa-miR-523-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +67687-4_11 256 19 31760 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 XN:Z:hsa-miR-523-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +67687-4_11 0 19 31760 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:6 XN:Z:hsa-miR-523-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +84523-3_11 0 19 31760 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:5 XN:Z:hsa-miR-523-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +84523-3_11 256 19 31760 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:6 XN:Z:hsa-miR-523-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +270375-1_1 0 19 44377 255 21M * 0 0 CTACAAAGGGAAGCACTTTCT * MD:Z:21 NH:i:1 NM:i:0 XN:Z:hsa-miR-524-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +270376-1_1 0 19 44377 255 20M * 0 0 CTACAAAGGGAAGCACTTTC * MD:Z:20 NH:i:1 NM:i:0 XN:Z:hsa-miR-524-5p|0|-2|20M|20|CTACAAAGGGAAGCACTTTC +57516-5_1 0 19 30907 255 20M * 0 0 CTCCAGAGGGATGCACTTTC * MD:Z:20 NH:i:1 NM:i:0 XN:Z:hsa-miR-525-5p|0|-1|20M|20|CTCCAGAGGGATGCACTTTC +102026-3_1 0 19 30907 255 21M * 0 0 CTCCAGAGGGATGCACTTTCT * MD:Z:21 NH:i:1 NM:i:0 XN:Z:hsa-miR-525-5p|0|0|21M|21|CTCCAGAGGGATGCACTTTCT +120527-2_9 0 19 39626 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:3 XN:Z:hsa-miR-526a-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA +120527-2_9 0 19 60288 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:7 XN:Z:hsa-miR-526a-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA +120527-2_9 256 19 39626 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:2 XN:Z:hsa-miR-526a-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA +120527-2_9 256 19 60288 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:6 XN:Z:hsa-miR-526a-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA +95680-3_9 256 19 39626 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:2 XN:Z:hsa-miR-526a-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +95680-3_9 0 19 39626 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:3 XN:Z:hsa-miR-526a-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +95680-3_9 256 19 60288 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:6 XN:Z:hsa-miR-526a-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +95680-3_9 0 19 60288 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:7 XN:Z:hsa-miR-526a-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +270379-1_5 256 19 39626 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:2 XN:Z:hsa-miR-526a-5p|0|-1|21M|3T16T0|CTCTAGAGGGAAGCACTTTCA +270379-1_5 256 19 60288 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:4 XN:Z:hsa-miR-526a-5p|0|-1|21M|3T16T0|CTCTAGAGGGAAGCACTTTCA +139675-2_9 0 19 39626 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:2 XN:Z:hsa-miR-526a-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC +139675-2_9 256 19 39626 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:3 XN:Z:hsa-miR-526a-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC +139675-2_9 0 19 60288 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:6 XN:Z:hsa-miR-526a-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC +139675-2_9 256 19 60288 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:7 XN:Z:hsa-miR-526a-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC +531738-1_9 0 19 39626 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:2 XN:Z:hsa-miR-526a-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT +531738-1_9 256 19 39626 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:3 XN:Z:hsa-miR-526a-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT +531738-1_9 0 19 60288 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:6 XN:Z:hsa-miR-526a-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT +531738-1_9 256 19 60288 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:7 XN:Z:hsa-miR-526a-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT +270381-1_7 0 19 39626 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 NH:i:7 HI:i:1 XN:Z:hsa-miR-526a-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTG +270381-1_7 256 19 39626 1 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:7 HI:i:2 XN:Z:hsa-miR-526a-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTG +270381-1_7 0 19 60288 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 NH:i:7 HI:i:5 XN:Z:hsa-miR-526a-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTG diff --git a/scripts/tests/files/in_aln_tag_missing_nh.sam b/scripts/tests/files/in_aln_tag_missing_nh.sam index de9326c..b8f02e2 100644 --- a/scripts/tests/files/in_aln_tag_missing_nh.sam +++ b/scripts/tests/files/in_aln_tag_missing_nh.sam @@ -4,265 +4,265 @@ @PG ID:samtools.1 PN:samtools PP:samtools VN:1.16.1 CL:samtools view -H results/test_lib/removeMultimappers.sam @PG ID:samtools.2 PN:samtools PP:samtools.1 VN:1.16.1 CL:samtools view -H results/test_lib/premir_intersectedAlignments.sam @PG ID:samtools.3 PN:samtools PP:samtools.2 VN:1.16.1 CL:samtools sort -t YW -O SAM results/test_lib/mirna_intersecting_tag.sam -256497-1_1 0 19 9096 1 4M1I9M1I2M * 0 0 AAGCCAGTTTCTGTCTG * HI:i:0 MD:Z:15 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z: +256497-1_1 0 19 9096 1 4M1I9M1I2M * 0 0 AAGCCAGTTTCTGTCTG * HI:i:0 MD:Z:15 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z: 391978-1_2 256 19 12384 1 3M1I2M1I14M * 0 0 AAGCAACAGCACTTTCTGTAG * MD:Z:17T1 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 YW:Z: 391978-1_2 0 19 18390 1 3M1I2M1I14M * 0 0 AAGCAACAGCACTTTCTGTAG * MD:Z:17T1 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 YW:Z: 705321-1_1 0 19 24304 1 16M * 0 0 CTTTGGACTGTTTCTG * MD:Z:14G1 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:1 HI:i:1 YW:Z: 615330-1_1 0 19 42114 1 4M1I16M * 0 0 TCACAACTCTGGAGGGAAGCA * HI:i:0 MD:Z:1G2T15 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z: 623283-1_1 0 19 42116 1 2M1I16M * 0 0 ACAACTCTGGAGGGAAGCA * HI:i:0 MD:Z:2T15 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z: 445515-1_1 0 19 53506 1 9M1D7M * 0 0 AAGAAAGTGTTCTCTA * HI:i:0 MD:Z:9^C6T0 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z: -138559-2_2 256 19 75885 1 12M1D2M1D2M1I6M * 0 0 CCCTCTAGAGGAGCCTGTTCTGT * MD:Z:12^A2^A8 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 YW:Z: +138559-2_2 256 19 75885 1 12M1D2M1D2M1I6M * 0 0 CCCTCTAGAGGAGCCTGTTCTGT * MD:Z:12^A2^A8 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 YW:Z: 641705-1_1 0 19 121288 1 9M1I6M * 0 0 TGGAAAGTGGCTGAGA * HI:i:0 MD:Z:12C2 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z: -709268-1_1 0 19 5338 255 21M * 0 0 TCAAAACTGAGGGGCATTTTC * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-1323|0|-1|21M|21 -528546-1_1 0 19 5338 255 22M * 0 0 TCAAAACTGAGGGGCATTTTCT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-1323|0|0|22M|22 -270342-1_1 0 19 121040 255 20M * 0 0 ACTCAAACTGTGGGGGCACT * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-371a-5p|0|0|20M|20 -840419-1_1 0 19 121040 1 23M * 0 0 ACTCAAACTGTGGGGGCCCTTAG * HI:i:0 MD:Z:17A3T0C0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-371a-5p|0|3|23M|17A3T0C0 -120522-2_1 16 19 121038 255 22M * 0 0 GCACTCAAACTGTGGGGGCACT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-371b-3p|0|-1|22M|22 -299969-1_1 0 19 121291 1 22M * 0 0 CGAGCGCTGCGACATTTGAGCG * HI:i:0 MD:Z:0A0A2T17 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-372-3p|0|-1|22M|0A0A2T17 -67825-4_1 0 19 121291 255 22M * 0 0 AAAGTGCTGCGACATTTGAGCG * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-372-3p|0|-1|22M|22 -90583-3_1 0 19 121291 255 22M * 0 0 AAATTGCTGCGACATTTGAGCG * MD:Z:3G18 NH:i:1 NM:i:1 YW:Z:hsa-miR-372-3p|0|-1|22M|3G18 -629861-1_1 0 19 121291 1 23M * 0 0 AGAGTGCTGCGACATTTGAGCGA * HI:i:0 MD:Z:1A20T0 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-372-3p|0|0|23M|1A20T0 -120521-2_1 0 19 121291 255 23M * 0 0 AAAGTGCTGCGACATTTGAGCGA * MD:Z:22T NH:i:1 NM:i:1 YW:Z:hsa-miR-372-3p|0|0|23M|22T -739110-1_1 0 19 121291 255 23M * 0 0 AAAGTGCTGCGACATTTGAGCGT * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-372-3p|0|0|23M|23 -270338-1_1 0 19 121291 255 23M * 0 0 AAATTGCTGCGACATTTGAGCGT * MD:Z:3G19 NH:i:1 NM:i:1 YW:Z:hsa-miR-372-3p|0|0|23M|3G19 -267649-1_1 0 19 121292 255 21M1I1M * 0 0 AAGTGCTGCGACATTTGAGCGAT * MD:Z:23 NH:i:1 NM:i:1 YW:Z:hsa-miR-372-3p|1|0|21M1I1M|23 -313132-1_1 0 19 121292 255 22M * 0 0 AAGTGCTGCGACATTTGAGCGT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-372-3p|1|0|22M|22 -270337-1_1 0 19 121292 1 4M1I18M * 0 0 AACTTGCTGCGACATTTGAGCGT * HI:i:0 MD:Z:2G19 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-372-3p|1|0|4M1I18M|2G19 -188149-2_1 0 19 122108 255 23M * 0 0 GAAGTGCTTCGATTTTGGGGTGT * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-373-3p|0|0|23M|23 -270393-1_1 0 19 7590 255 23M * 0 0 TTTCAAGCCAGGGGGCGTTTTTC * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-498-5p|0|0|23M|23 -610105-1_2 256 19 87 1 3M1I17M * 0 0 GAACAGTGCTGTGATAACTGA * MD:Z:11C3G4 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 YW:Z:hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4 -610105-1_2 0 19 2571 1 3M1I17M * 0 0 GAACAGTGCTGTGATAACTGA * MD:Z:11C3G4 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 YW:Z:hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4 -645839-1_3 0 19 89 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGA * MD:Z:20T NM:i:1 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|-1|21M|20T -645839-1_3 0 19 2573 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGA * MD:Z:20T NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|-1|21M|20T -645839-1_3 256 19 89 1 21M * 0 0 AAGTGCTGTCATAGCTGAGGA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|-1|21M|20T0 -67830-4_3 256 19 89 1 21M * 0 0 AAGTGCTGTCATAGCTGAGGT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|-1|21M|21 -67830-4_3 0 19 89 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|-1|21M|21 -67830-4_3 0 19 2573 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|-1|21M|21 -535182-1_3 256 19 89 1 21M * 0 0 AAGTGCTTTCATAGCTGAGGT * MD:Z:7G13 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|-1|21M|7G13 -535182-1_3 0 19 89 255 21M * 0 0 AAGTGCTTTCATAGCTGAGGT * MD:Z:7G13 NM:i:1 HI:i:2 YW:Z:hsa-miR-512-3p|0|-1|21M|7G13 -535182-1_3 0 19 2573 255 21M * 0 0 AAGTGCTTTCATAGCTGAGGT * MD:Z:7G13 NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|-1|21M|7G13 -766380-1_3 0 19 89 255 20M * 0 0 AAGTGCTGTCATCGCTGAGG * MD:Z:12A7 NM:i:1 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|-2|20M|12A7 -766380-1_3 256 19 89 1 20M * 0 0 AAGTGCTGTCATCGCTGAGG * MD:Z:12A7 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|-2|20M|12A7 -766380-1_3 0 19 2573 255 20M * 0 0 AAGTGCTGTCATCGCTGAGG * MD:Z:12A7 NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|-2|20M|12A7 -67831-4_3 0 19 89 255 20M * 0 0 AAGTGCTGTCATAGCTGAGG * MD:Z:20 NM:i:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|-2|20M|20 -67831-4_3 256 19 89 1 20M * 0 0 AAGTGCTGTCATAGCTGAGG * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|-2|20M|20 -67831-4_3 0 19 2573 255 20M * 0 0 AAGTGCTGTCATAGCTGAGG * MD:Z:20 NM:i:0 HI:i:3 YW:Z:hsa-miR-512-3p|0|-2|20M|20 -270395-1_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATCGCTGAGGTC * MD:Z:12A9 NM:i:1 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|0|22M|12A9 -270395-1_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATCGCTGAGGTC * MD:Z:12A9 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|0|22M|12A9 -270395-1_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATCGCTGAGGTC * MD:Z:12A9 NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|0|22M|12A9 -773136-1_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATAGCTGCGGTC * MD:Z:17A4 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|0|22M|17A4 -773136-1_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATAGCTGCGGTC * MD:Z:17A4 NM:i:1 HI:i:2 YW:Z:hsa-miR-512-3p|0|0|22M|17A4 -773136-1_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATAGCTGCGGTC * MD:Z:17A4 NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|0|22M|17A4 -102065-3_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTT * MD:Z:21C NM:i:1 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|0|22M|21C -102065-3_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTT * MD:Z:21C NM:i:1 HI:i:3 YW:Z:hsa-miR-512-3p|0|0|22M|21C -102065-3_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATAGCTGAGGTT * MD:Z:21C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|0|22M|21C0 -37896-9_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATAGCTGAGGTC * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|0|22M|22 -37896-9_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTC * MD:Z:22 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|0|22M|22 -37896-9_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTC * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|0|22M|22 -334943-1_2 256 19 89 1 23M * 0 0 AAGTGCTGTCATAGCTGAGGTAG * MD:Z:21C0C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 YW:Z:hsa-miR-512-3p|0|1|23M|21C0C0 -334943-1_2 0 19 2573 1 23M * 0 0 AAGTGCTGTCATAGCTGAGGTAG * MD:Z:21C0C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 YW:Z:hsa-miR-512-3p|0|1|23M|21C0C0 -270396-1_3 0 19 89 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCT * MD:Z:22C NM:i:1 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-3p|0|1|23M|22C -270401-1_2 0 19 89 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCA * MD:Z:22C NM:i:1 NH:i:2 HI:i:1 YW:Z:hsa-miR-512-3p|0|1|23M|22C -270396-1_3 0 19 2573 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCT * MD:Z:22C NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-3p|0|1|23M|22C -270401-1_2 0 19 2573 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCA * MD:Z:22C NM:i:1 NH:i:2 HI:i:2 YW:Z:hsa-miR-512-3p|0|1|23M|22C -270396-1_3 256 19 89 1 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCT * MD:Z:22C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-3p|0|1|23M|22C0 -673650-1_2 256 19 89 1 23M * 0 0 AAGAGCTGTCATAGCTGAGGTCT * MD:Z:3T18C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 YW:Z:hsa-miR-512-3p|0|1|23M|3T18C0 -673650-1_2 0 19 2573 1 23M * 0 0 AAGAGCTGTCATAGCTGAGGTCT * MD:Z:3T18C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 YW:Z:hsa-miR-512-3p|0|1|23M|3T18C0 -150819-2_3 256 19 53 1 21M * 0 0 ACTCAGCCTTGAGGGCACTTT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-5p|1|-1|21M|21 -150819-2_3 0 19 53 255 21M * 0 0 ACTCAGCCTTGAGGGCACTTT * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-5p|1|-1|21M|21 -150819-2_3 0 19 2537 255 21M * 0 0 ACTCAGCCTTGAGGGCACTTT * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-5p|1|-1|21M|21 -270402-1_3 0 19 53 255 20M * 0 0 ACTCAGCCTTGAGGGCACTT * MD:Z:20 NM:i:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-5p|1|-2|20M|20 -270402-1_3 256 19 53 1 20M * 0 0 ACTCAGCCTTGAGGGCACTT * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-5p|1|-2|20M|20 -270402-1_3 0 19 2537 255 20M * 0 0 ACTCAGCCTTGAGGGCACTT * MD:Z:20 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-5p|1|-2|20M|20 -752875-1_3 256 19 53 1 22M * 0 0 ACTCAGCCTTGAGGGCACTTTC * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-512-5p|1|0|22M|22 -752875-1_3 0 19 53 255 22M * 0 0 ACTCAGCCTTGAGGGCACTTTC * MD:Z:22 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-512-5p|1|0|22M|22 -752875-1_3 0 19 2537 255 22M * 0 0 ACTCAGCCTTGAGGGCACTTTC * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-512-5p|1|0|22M|22 -369314-1_3 0 19 12413 255 21M * 0 0 GAGTGCCTTCTTTTGGAGCGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-515-3p|0|-1|21M|21 -369314-1_3 256 19 12413 1 21M * 0 0 GAGTGCCTTCTTTTGGAGCGT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-515-3p|0|-1|21M|21 -369314-1_3 0 19 18419 255 21M * 0 0 GAGTGCCTTCTTTTGGAGCGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-515-3p|0|-1|21M|21 -54840-6_3 0 19 90116 255 22M * 0 0 TTCTCGAGGAAAGAAGCACTTT * MD:Z:22 NM:i:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-516a-5p|0|-1|22M|22 -54840-6_3 256 19 90116 1 22M * 0 0 TTCTCGAGGAAAGAAGCACTTT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-516a-5p|0|-1|22M|22 -54840-6_3 0 19 94508 255 22M * 0 0 TTCTCGAGGAAAGAAGCACTTT * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-516a-5p|0|-1|22M|22 -423555-1_3 256 19 90117 1 21M * 0 0 TCTCGAGGAAAGAAGCACTTT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-516a-5p|1|-1|21M|21 -423555-1_3 0 19 90117 255 21M * 0 0 TCTCGAGGAAAGAAGCACTTT * MD:Z:21 NM:i:0 HI:i:2 YW:Z:hsa-miR-516a-5p|1|-1|21M|21 -423555-1_3 0 19 94509 255 21M * 0 0 TCTCGAGGAAAGAAGCACTTT * MD:Z:21 NM:i:0 HI:i:3 YW:Z:hsa-miR-516a-5p|1|-1|21M|21 -270365-1_3 0 19 58817 255 19M * 0 0 ATCTGGAGGTAAGAAGCAA * MD:Z:18C NM:i:1 NH:i:3 HI:i:2 YW:Z:hsa-miR-516b-5p|0|-3|19M|18C -270365-1_3 0 19 70220 255 19M * 0 0 ATCTGGAGGTAAGAAGCAA * MD:Z:18C NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-516b-5p|0|-3|19M|18C -270365-1_3 256 19 58817 1 19M * 0 0 ATCTGGAGGTAAGAAGCAA * MD:Z:18C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-516b-5p|0|-3|19M|18C0 -270366-1_3 256 19 58817 1 22M * 0 0 ATCTGGAGGTCAGAAGCACTTT * MD:Z:10A11 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-516b-5p|0|0|22M|10A11 -270366-1_3 0 19 58817 255 22M * 0 0 ATCTGGAGGTCAGAAGCACTTT * MD:Z:10A11 NM:i:1 NH:i:3 HI:i:2 YW:Z:hsa-miR-516b-5p|0|0|22M|10A11 -270366-1_3 0 19 70220 255 22M * 0 0 ATCTGGAGGTCAGAAGCACTTT * MD:Z:10A11 NM:i:1 NH:i:3 HI:i:3 YW:Z:hsa-miR-516b-5p|0|0|22M|10A11 -86082-3_3 256 19 58817 1 22M * 0 0 ATCTGGAGGTAAGAAGCACTTT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-516b-5p|0|0|22M|22 -86082-3_3 0 19 58817 255 22M * 0 0 ATCTGGAGGTAAGAAGCACTTT * MD:Z:22 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-516b-5p|0|0|22M|22 -86082-3_3 0 19 70220 255 22M * 0 0 ATCTGGAGGTAAGAAGCACTTT * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-516b-5p|0|0|22M|22 -270359-1_5 0 19 45641 255 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T NM:i:1 HI:i:1 YW:Z:hsa-miR-517-5p|-1|0|23M|22T -270359-1_5 0 19 54440 255 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T NM:i:1 HI:i:2 YW:Z:hsa-miR-517-5p|-1|0|23M|22T -270359-1_5 0 19 74691 255 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T NM:i:1 HI:i:4 YW:Z:hsa-miR-517-5p|-1|0|23M|22T -270359-1_5 256 19 54440 1 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:3 YW:Z:hsa-miR-517-5p|-1|0|23M|22T0 -270359-1_5 256 19 74691 1 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:5 YW:Z:hsa-miR-517-5p|-1|0|23M|22T0 -752904-1_3 0 19 45646 1 6M1D13M * 0 0 GAGATGAAGCACTGTCTGT * MD:Z:0T5^G13 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|0T5^G13 -752904-1_3 256 19 54445 1 6M1D13M * 0 0 GAGATGAAGCACTGTCTGT * MD:Z:0T5^G13 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|0T5^G13 -752904-1_3 256 19 74696 1 6M1D13M * 0 0 GAGATGAAGCACTGTCTGT * MD:Z:0T5^G13 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|0T5^G13 -105051-3_3 0 19 45646 1 6M1D13M * 0 0 TAGATGAAGCACTGTATGT * MD:Z:6^G9C3 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|6^G9C3 -105051-3_3 256 19 54445 1 6M1D13M * 0 0 TAGATGAAGCACTGTATGT * MD:Z:6^G9C3 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|6^G9C3 -105051-3_3 256 19 74696 1 6M1D13M * 0 0 TAGATGAAGCACTGTATGT * MD:Z:6^G9C3 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|6^G9C3 -120530-2_3 256 19 45681 1 21M * 0 0 ATCGTGCATCCCTTTAGAGTG * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-517a-3p|0|-1|21M|21 -120530-2_3 0 19 45681 255 21M * 0 0 ATCGTGCATCCCTTTAGAGTG * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-517a-3p|0|-1|21M|21 -67957-4_3 0 19 45681 255 22M * 0 0 ATCGTGCATCCCTTTAGAGTGT * MD:Z:22 NM:i:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-517a-3p|0|0|22M|22 -67957-4_3 256 19 45681 1 22M * 0 0 ATCGTGCATCCCTTTAGAGTGT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-517a-3p|0|0|22M|22 -120530-2_3 0 19 54478 255 21M * 0 0 ATCGTGCATCCCTTTAGAGTG * MD:Z:21 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-517b-3p|0|-1|21M|21 -67957-4_3 0 19 54478 255 22M * 0 0 ATCGTGCATCCCTTTAGAGTGT * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-517b-3p|0|0|22M|22 -447402-1_1 0 19 36147 255 22M * 0 0 CAAAGCGCTCCCCTTTAGAGGT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-518b|0|0|22M|22 -270377-1_1 0 19 42119 255 21M * 0 0 CTCTGGAGGGAAGCACTTTCT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-518c-5p|1|-1|21M|21 -751085-1_1 0 19 42119 255 20M * 0 0 CTCTGGAGGGAAGCACTTTA * MD:Z:19C NH:i:1 NM:i:1 YW:Z:hsa-miR-518c-5p|1|-2|20M|19C -270378-1_1 0 19 42119 255 22M * 0 0 CTCTGGAGGGAAGCACTTTCTG * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-518c-5p|1|0|22M|22 -120527-2_9 0 19 68252 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:8 YW:Z:hsa-miR-518d-5p|0|-1|21M|20T -120527-2_9 256 19 68252 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:9 YW:Z:hsa-miR-518d-5p|0|-1|21M|20T0 -95680-3_9 0 19 68252 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 HI:i:8 YW:Z:hsa-miR-518d-5p|0|-1|21M|21 -95680-3_9 256 19 68252 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:9 YW:Z:hsa-miR-518d-5p|0|-1|21M|21 -270379-1_5 256 19 68252 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:5 YW:Z:hsa-miR-518d-5p|0|-1|21M|3T16T0 -139675-2_9 256 19 68252 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:8 YW:Z:hsa-miR-518d-5p|0|-2|20M|20 -139675-2_9 0 19 68252 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 HI:i:9 YW:Z:hsa-miR-518d-5p|0|-2|20M|20 -531738-1_9 256 19 68252 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:8 YW:Z:hsa-miR-518d-5p|0|-3|19M|19 -531738-1_9 0 19 68252 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:9 YW:Z:hsa-miR-518d-5p|0|-3|19M|19 -270381-1_7 256 19 68252 1 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:7 HI:i:6 YW:Z:hsa-miR-518d-5p|0|0|22M|22 -270381-1_7 0 19 68252 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 HI:i:7 YW:Z:hsa-miR-518d-5p|0|0|22M|22 -270360-1_1 0 19 63251 255 21M * 0 0 AAAGCGCTTCCCTTCAGAGTG * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-518e-3p|0|0|21M|21 -676180-1_6 0 19 63213 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:4 YW:Z:hsa-miR-518e-5p|0|-1|21M|19C0T0 -18915-24_11 0 19 63213 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 HI:i:7 YW:Z:hsa-miR-518e-5p|0|-1|21M|21 -270361-1_11 0 19 63213 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:7 YW:Z:hsa-miR-518e-5p|0|-2|20M|19C -630277-1_11 0 19 63213 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:7 YW:Z:hsa-miR-518e-5p|0|-3|19M|19 -67687-4_11 0 19 63213 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:7 YW:Z:hsa-miR-518e-5p|0|0|22M|22 -84523-3_11 0 19 63213 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:7 YW:Z:hsa-miR-518e-5p|0|1|23M|23 -120527-2_9 0 19 33390 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:1 YW:Z:hsa-miR-518f-5p|0|-1|21M|20T -95680-3_9 0 19 33390 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:1 YW:Z:hsa-miR-518f-5p|0|-1|21M|21 -270379-1_5 0 19 33390 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:1 YW:Z:hsa-miR-518f-5p|0|-1|21M|3T16T0 -139675-2_9 0 19 33390 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:1 YW:Z:hsa-miR-518f-5p|0|-2|20M|20 -531738-1_9 0 19 33390 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:1 YW:Z:hsa-miR-518f-5p|0|-3|19M|19 -347693-1_1 0 19 33390 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTC * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-518f-5p|0|0|22M|22 -270348-1_3 0 19 85809 255 22M * 0 0 AAATTGCATCCTTTTAGAGTGT * MD:Z:3G18 NM:i:1 HI:i:1 YW:Z:hsa-miR-519a-3p|0|0|22M|3G18 -270348-1_3 0 19 95757 255 22M * 0 0 AAATTGCATCCTTTTAGAGTGT * MD:Z:3G18 NM:i:1 NH:i:3 HI:i:2 YW:Z:hsa-miR-519a-3p|0|0|22M|3G18 -270348-1_3 256 19 95757 1 22M * 0 0 AAATTGCATCCTTTTAGAGTGT * MD:Z:3G18 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-519a-3p|0|0|22M|3G18 -270357-1_1 0 19 85770 255 22M * 0 0 ACTCTAGAGGGAAGCGCTTTCA * MD:Z:21T NH:i:1 NM:i:1 YW:Z:hsa-miR-519a-5p|-1|-1|22M|21T -58870-5_1 0 19 85770 255 22M * 0 0 ACTCTAGAGGGAAGCGCTTTCT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-519a-5p|-1|-1|22M|22 -270354-1_1 0 19 85770 255 20M * 0 0 ACTCTAGAGGGAAGCGCTTT * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-519a-5p|-1|-3|20M|20 -676180-1_6 256 19 85771 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:6 YW:Z:hsa-miR-519a-5p|0|-1|21M|19C0T0 -18915-24_11 0 19 85771 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 HI:i:10 YW:Z:hsa-miR-519a-5p|0|-1|21M|21 -18915-24_11 256 19 85771 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 YW:Z:hsa-miR-519a-5p|0|-1|21M|21 -270361-1_11 0 19 85771 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:10 YW:Z:hsa-miR-519a-5p|0|-2|20M|19C -270361-1_11 256 19 85771 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 YW:Z:hsa-miR-519a-5p|0|-2|20M|19C0 -630277-1_11 0 19 85771 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:10 YW:Z:hsa-miR-519a-5p|0|-3|19M|19 -630277-1_11 256 19 85771 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 YW:Z:hsa-miR-519a-5p|0|-3|19M|19 -67687-4_11 256 19 85771 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:10 YW:Z:hsa-miR-519a-5p|0|0|22M|22 -67687-4_11 0 19 85771 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:11 YW:Z:hsa-miR-519a-5p|0|0|22M|22 -84523-3_11 0 19 85771 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:10 YW:Z:hsa-miR-519a-5p|0|1|23M|23 -84523-3_11 256 19 85771 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 YW:Z:hsa-miR-519a-5p|0|1|23M|23 -676180-1_6 256 19 28585 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:2 YW:Z:hsa-miR-519b-5p|0|-1|21M|19C0T0 -18915-24_11 256 19 28585 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:3 YW:Z:hsa-miR-519b-5p|0|-1|21M|21 -18915-24_11 0 19 28585 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:4 YW:Z:hsa-miR-519b-5p|0|-1|21M|21 -270361-1_11 0 19 28585 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 HI:i:3 YW:Z:hsa-miR-519b-5p|0|-2|20M|19C -270361-1_11 256 19 28585 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:4 YW:Z:hsa-miR-519b-5p|0|-2|20M|19C0 -630277-1_11 256 19 28585 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:3 YW:Z:hsa-miR-519b-5p|0|-3|19M|19 -630277-1_11 0 19 28585 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:4 YW:Z:hsa-miR-519b-5p|0|-3|19M|19 -67687-4_11 256 19 28585 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:3 YW:Z:hsa-miR-519b-5p|0|0|22M|22 -67687-4_11 0 19 28585 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:4 YW:Z:hsa-miR-519b-5p|0|0|22M|22 -84523-3_11 0 19 28585 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:3 YW:Z:hsa-miR-519b-5p|0|1|23M|23 -84523-3_11 256 19 28585 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:4 YW:Z:hsa-miR-519b-5p|0|1|23M|23 -676180-1_6 256 19 19844 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:1 YW:Z:hsa-miR-519c-5p|0|-1|21M|19C0T0 -18915-24_11 0 19 19844 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:1 YW:Z:hsa-miR-519c-5p|0|-1|21M|21 -18915-24_11 256 19 19844 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:2 YW:Z:hsa-miR-519c-5p|0|-1|21M|21 -270361-1_11 0 19 19844 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:2 YW:Z:hsa-miR-519c-5p|0|-2|20M|19C -270361-1_11 256 19 19844 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:1 YW:Z:hsa-miR-519c-5p|0|-2|20M|19C0 -630277-1_11 0 19 19844 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:1 YW:Z:hsa-miR-519c-5p|0|-3|19M|19 -630277-1_11 256 19 19844 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:2 YW:Z:hsa-miR-519c-5p|0|-3|19M|19 -67687-4_11 0 19 19844 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:1 YW:Z:hsa-miR-519c-5p|0|0|22M|22 -67687-4_11 256 19 19844 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:2 YW:Z:hsa-miR-519c-5p|0|0|22M|22 -84523-3_11 256 19 19844 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 HI:i:1 YW:Z:hsa-miR-519c-5p|0|1|23M|23 -84523-3_11 0 19 19844 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:2 YW:Z:hsa-miR-519c-5p|0|1|23M|23 -270371-1_1 0 19 46760 255 21M * 0 0 CAAAGTGCCTCCCTTTAGAGT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-519d-3p|0|-1|21M|21 -153079-2_1 0 19 46760 255 20M * 0 0 CAAAGTGCCTCCCTTTAGAG * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-519d-3p|0|-2|20M|20 -67829-4_1 0 19 24293 255 22M * 0 0 AAAGTGCTTCCCTTTGGACTGT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-520a-3p|0|0|22M|22 -655140-1_1 0 19 24293 255 22M * 0 0 AAATTGCTTCCCTTTGGACTGT * MD:Z:3G18 NH:i:1 NM:i:1 YW:Z:hsa-miR-520a-3p|0|0|22M|3G18 -485300-1_1 0 19 24293 255 23M * 0 0 AAAGTGCTTCCCTTTGGACTGTA * MD:Z:22T NH:i:1 NM:i:1 YW:Z:hsa-miR-520a-3p|0|1|23M|22T -729311-1_1 0 19 24255 1 21M * 0 0 CTCCAGAGGGAAGTACTTTGA * HI:i:0 MD:Z:19C0T0 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|0|21M|19C0T0 -720817-1_1 0 19 24255 255 21M * 0 0 CTCCAGAGGGAAGTACTTTCG * MD:Z:20T NM:i:1 NH:i:1 HI:i:1 YW:Z:hsa-miR-520a-5p|0|0|21M|20T -120535-2_1 0 19 24255 255 21M * 0 0 CTCCAGAGGGAAGTACTTTCT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-520a-5p|0|0|21M|21 -228043-1_1 0 19 24255 1 19M1D2M * 0 0 CTCCAGAGGGAAGTACTTTAG * HI:i:0 MD:Z:19^C0T1 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1 -609803-1_1 0 19 24255 1 19M1I3M * 0 0 CTCCAGAGGGAAGTACTTTGAAG * HI:i:0 MD:Z:19C0T1 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|1|19M1I3M|19C0T1 -101076-3_1 0 19 24255 1 19M1D3M * 0 0 CTCCAGAGGGAAGTACTTTAGA * HI:i:0 MD:Z:19^C0T1T0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0 -127441-2_1 0 19 24255 1 19M1D3M * 0 0 CTCCAGAGGGAAGTACTTTTAA * HI:i:0 MD:Z:19^C1G0T0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0 -103161-3_1 0 19 24255 1 20M1D2M * 0 0 CTCCAGAGGGAAGTACTTTCGA * HI:i:0 MD:Z:20^T1T0 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0 -478794-1_1 0 19 24255 1 23M * 0 0 CTCCAGAGGGAAGTACTTTAAGA * HI:i:0 MD:Z:19C0T1T0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|2|23M|19C0T1T0 -744127-1_5 0 19 34626 255 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 NH:i:5 HI:i:2 YW:Z:hsa-miR-520b-3p|-1|-1|21M|21 -744127-1_5 256 19 34626 1 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:3 YW:Z:hsa-miR-520b-3p|-1|-1|21M|21 -120532-2_3 0 19 34627 255 22M * 0 0 AAAGTGCTTCCTTTTAGAGGGT * MD:Z:22 NM:i:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-520b-3p|0|1|22M|22 -744127-1_5 0 19 40865 255 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 NH:i:5 HI:i:4 YW:Z:hsa-miR-520c-3p|-1|-2|21M|21 -744127-1_5 256 19 40865 1 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:5 YW:Z:hsa-miR-520c-3p|-1|-2|21M|21 -120532-2_3 256 19 40866 1 22M * 0 0 AAAGTGCTTCCTTTTAGAGGGT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-520c-3p|0|0|22M|22 -120532-2_3 0 19 40866 255 22M * 0 0 AAAGTGCTTCCTTTTAGAGGGT * MD:Z:22 NM:i:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-520c-3p|0|0|22M|22 -120527-2_9 0 19 40828 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:4 YW:Z:hsa-miR-520c-5p|0|-1|21M|20T -120527-2_9 256 19 40828 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:5 YW:Z:hsa-miR-520c-5p|0|-1|21M|20T0 -95680-3_9 256 19 40828 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:4 YW:Z:hsa-miR-520c-5p|0|-1|21M|21 -95680-3_9 0 19 40828 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:5 YW:Z:hsa-miR-520c-5p|0|-1|21M|21 -270379-1_5 256 19 40828 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:3 YW:Z:hsa-miR-520c-5p|0|-1|21M|3T16T0 -139675-2_9 256 19 40828 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:4 YW:Z:hsa-miR-520c-5p|0|-2|20M|20 -139675-2_9 0 19 40828 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:5 YW:Z:hsa-miR-520c-5p|0|-2|20M|20 -531738-1_9 256 19 40828 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:4 YW:Z:hsa-miR-520c-5p|0|-3|19M|19 -531738-1_9 0 19 40828 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 HI:i:5 YW:Z:hsa-miR-520c-5p|0|-3|19M|19 -270381-1_7 256 19 40828 1 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:7 HI:i:3 YW:Z:hsa-miR-520c-5p|0|0|22M|22 -270381-1_7 0 19 40828 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 HI:i:4 YW:Z:hsa-miR-520c-5p|0|0|22M|22 -361022-1_1 0 19 9124 255 21M * 0 0 AAAGTGCTTCCTTTTTGAGGG * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-520e-3p|0|0|21M|21 -772976-1_1 0 19 9089 1 7M1I9M * 0 0 AAAATGGGAAGCAGTTT * HI:i:0 MD:Z:2G13 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520e-5p|3|-3|7M1I9M|2G13 -270368-1_3 0 19 55581 255 21M * 0 0 CAAAGTGCTTCCCTTTAGAGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:1 YW:Z:hsa-miR-520g-3p|1|-2|21M|21 -270369-1_1 0 19 55581 255 23M * 0 0 CAAAGTGCTTCCCTTTAGAGTGT * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-520g-3p|1|0|23M|23 -138559-2_2 0 19 55539 1 12M1D2M1D2M1I6M * 0 0 CCCTCTAGAGGAGCCTGTTCTGT * MD:Z:12^A2^A8 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 YW:Z:hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8 -270368-1_3 0 19 75927 255 21M * 0 0 CAAAGTGCTTCCCTTTAGAGT * MD:Z:21 NM:i:0 NH:i:3 HI:i:2 YW:Z:hsa-miR-520h|1|0|21M|21 -270368-1_3 256 19 75927 1 21M * 0 0 CAAAGTGCTTCCCTTTAGAGT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:3 HI:i:3 YW:Z:hsa-miR-520h|1|0|21M|21 -270358-1_1 0 19 84624 1 22M * 0 0 AGAATGGTTCCCTTTAGAGTGT * MD:Z:1A20 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:1 HI:i:1 YW:Z:hsa-miR-522-3p|0|0|22M|1A20 -676180-1_6 256 19 84586 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:5 YW:Z:hsa-miR-522-5p|0|-1|21M|19C0T0 -18915-24_11 0 19 84586 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:8 YW:Z:hsa-miR-522-5p|0|-1|21M|21 -18915-24_11 256 19 84586 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:9 YW:Z:hsa-miR-522-5p|0|-1|21M|21 -270361-1_11 0 19 84586 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:9 YW:Z:hsa-miR-522-5p|0|-2|20M|19C -270361-1_11 256 19 84586 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:8 YW:Z:hsa-miR-522-5p|0|-2|20M|19C0 -630277-1_11 256 19 84586 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:8 YW:Z:hsa-miR-522-5p|0|-3|19M|19 -630277-1_11 0 19 84586 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:9 YW:Z:hsa-miR-522-5p|0|-3|19M|19 -67687-4_11 0 19 84586 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:8 YW:Z:hsa-miR-522-5p|0|0|22M|22 -67687-4_11 256 19 84586 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:9 YW:Z:hsa-miR-522-5p|0|0|22M|22 -84523-3_11 256 19 84586 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:8 YW:Z:hsa-miR-522-5p|0|1|23M|23 -84523-3_11 0 19 84586 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:9 YW:Z:hsa-miR-522-5p|0|1|23M|23 -676180-1_6 256 19 31760 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:3 YW:Z:hsa-miR-523-5p|0|-1|21M|19C0T0 -18915-24_11 256 19 31760 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 YW:Z:hsa-miR-523-5p|0|-1|21M|21 -18915-24_11 0 19 31760 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:6 YW:Z:hsa-miR-523-5p|0|-1|21M|21 -270361-1_11 0 19 31760 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:6 YW:Z:hsa-miR-523-5p|0|-2|20M|19C -270361-1_11 256 19 31760 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 YW:Z:hsa-miR-523-5p|0|-2|20M|19C0 -630277-1_11 256 19 31760 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 YW:Z:hsa-miR-523-5p|0|-3|19M|19 -630277-1_11 0 19 31760 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 HI:i:6 YW:Z:hsa-miR-523-5p|0|-3|19M|19 -67687-4_11 256 19 31760 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 YW:Z:hsa-miR-523-5p|0|0|22M|22 -67687-4_11 0 19 31760 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:6 YW:Z:hsa-miR-523-5p|0|0|22M|22 -84523-3_11 0 19 31760 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:5 YW:Z:hsa-miR-523-5p|0|1|23M|23 -84523-3_11 256 19 31760 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:6 YW:Z:hsa-miR-523-5p|0|1|23M|23 -270375-1_1 0 19 44377 255 21M * 0 0 CTACAAAGGGAAGCACTTTCT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-524-5p|0|-1|21M|21 -270376-1_1 0 19 44377 255 20M * 0 0 CTACAAAGGGAAGCACTTTC * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-524-5p|0|-2|20M|20 -57516-5_1 0 19 30907 255 20M * 0 0 CTCCAGAGGGATGCACTTTC * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-525-5p|0|-1|20M|20 -102026-3_1 0 19 30907 255 21M * 0 0 CTCCAGAGGGATGCACTTTCT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-525-5p|0|0|21M|21 -120527-2_9 0 19 39626 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:3 YW:Z:hsa-miR-526a-5p|0|-1|21M|20T -120527-2_9 0 19 60288 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:7 YW:Z:hsa-miR-526a-5p|0|-1|21M|20T -120527-2_9 256 19 39626 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 HI:i:2 YW:Z:hsa-miR-526a-5p|0|-1|21M|20T0 -120527-2_9 256 19 60288 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 HI:i:6 YW:Z:hsa-miR-526a-5p|0|-1|21M|20T0 -95680-3_9 256 19 39626 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:2 YW:Z:hsa-miR-526a-5p|0|-1|21M|21 -95680-3_9 0 19 39626 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:3 YW:Z:hsa-miR-526a-5p|0|-1|21M|21 -95680-3_9 256 19 60288 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:6 YW:Z:hsa-miR-526a-5p|0|-1|21M|21 -95680-3_9 0 19 60288 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:7 YW:Z:hsa-miR-526a-5p|0|-1|21M|21 -270379-1_5 256 19 39626 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:2 YW:Z:hsa-miR-526a-5p|0|-1|21M|3T16T0 -270379-1_5 256 19 60288 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:4 YW:Z:hsa-miR-526a-5p|0|-1|21M|3T16T0 -139675-2_9 0 19 39626 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:2 YW:Z:hsa-miR-526a-5p|0|-2|20M|20 -139675-2_9 256 19 39626 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:3 YW:Z:hsa-miR-526a-5p|0|-2|20M|20 -139675-2_9 0 19 60288 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:6 YW:Z:hsa-miR-526a-5p|0|-2|20M|20 -139675-2_9 256 19 60288 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:7 YW:Z:hsa-miR-526a-5p|0|-2|20M|20 -531738-1_9 0 19 39626 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:2 YW:Z:hsa-miR-526a-5p|0|-3|19M|19 -531738-1_9 256 19 39626 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 HI:i:3 YW:Z:hsa-miR-526a-5p|0|-3|19M|19 -531738-1_9 0 19 60288 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:6 YW:Z:hsa-miR-526a-5p|0|-3|19M|19 -531738-1_9 256 19 60288 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:7 YW:Z:hsa-miR-526a-5p|0|-3|19M|19 -270381-1_7 0 19 39626 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 HI:i:1 YW:Z:hsa-miR-526a-5p|0|0|22M|22 -270381-1_7 256 19 39626 1 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:7 HI:i:2 YW:Z:hsa-miR-526a-5p|0|0|22M|22 -270381-1_7 0 19 60288 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 HI:i:5 YW:Z:hsa-miR-526a-5p|0|0|22M|22 +709268-1_1 0 19 5338 255 21M * 0 0 TCAAAACTGAGGGGCATTTTC * MD:Z:21 NM:i:0 YW:Z:hsa-miR-1323|0|-1|21M|21|TCAAAACTGAGGGGCATTTTC +528546-1_1 0 19 5338 255 22M * 0 0 TCAAAACTGAGGGGCATTTTCT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-1323|0|0|22M|22|TCAAAACTGAGGGGCATTTTCT +270342-1_1 0 19 121040 255 20M * 0 0 ACTCAAACTGTGGGGGCACT * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-371a-5p|0|0|20M|20|ACTCAAACTGTGGGGGCACT +840419-1_1 0 19 121040 1 23M * 0 0 ACTCAAACTGTGGGGGCCCTTAG * HI:i:0 MD:Z:17A3T0C0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-371a-5p|0|3|23M|17A3T0C0|ACTCAAACTGTGGGGGCACTTAG +120522-2_1 16 19 121038 255 22M * 0 0 GCACTCAAACTGTGGGGGCACT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-371b-3p|0|-1|22M|22|GCACTCAAACTGTGGGGGCACT +299969-1_1 0 19 121291 1 22M * 0 0 CGAGCGCTGCGACATTTGAGCG * HI:i:0 MD:Z:0A0A2T17 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-372-3p|0|-1|22M|0A0A2T17|CGAGCGCTGCGACATTTGAGCG +67825-4_1 0 19 121291 255 22M * 0 0 AAAGTGCTGCGACATTTGAGCG * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-372-3p|0|-1|22M|22|AAAGTGCTGCGACATTTGAGCG +90583-3_1 0 19 121291 255 22M * 0 0 AAATTGCTGCGACATTTGAGCG * MD:Z:3G18 NH:i:1 NM:i:1 YW:Z:hsa-miR-372-3p|0|-1|22M|3G18|AAATTGCTGCGACATTTGAGCG +629861-1_1 0 19 121291 1 23M * 0 0 AGAGTGCTGCGACATTTGAGCGA * HI:i:0 MD:Z:1A20T0 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-372-3p|0|0|23M|1A20T0|AGAGTGCTGCGACATTTGAGCGA +120521-2_1 0 19 121291 255 23M * 0 0 AAAGTGCTGCGACATTTGAGCGA * MD:Z:22T NH:i:1 NM:i:1 YW:Z:hsa-miR-372-3p|0|0|23M|22T|AAAGTGCTGCGACATTTGAGCGA +739110-1_1 0 19 121291 255 23M * 0 0 AAAGTGCTGCGACATTTGAGCGT * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-372-3p|0|0|23M|23|AAAGTGCTGCGACATTTGAGCGT +270338-1_1 0 19 121291 255 23M * 0 0 AAATTGCTGCGACATTTGAGCGT * MD:Z:3G19 NH:i:1 NM:i:1 YW:Z:hsa-miR-372-3p|0|0|23M|3G19|AAATTGCTGCGACATTTGAGCGT +267649-1_1 0 19 121292 255 21M1I1M * 0 0 AAGTGCTGCGACATTTGAGCGAT * MD:Z:23 NH:i:1 NM:i:1 YW:Z:hsa-miR-372-3p|1|0|21M1I1M|23|AAGTGCTGCGACATTTGAGCGAT +313132-1_1 0 19 121292 255 22M * 0 0 AAGTGCTGCGACATTTGAGCGT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-372-3p|1|0|22M|22|AAGTGCTGCGACATTTGAGCGT +270337-1_1 0 19 121292 1 4M1I18M * 0 0 AACTTGCTGCGACATTTGAGCGT * HI:i:0 MD:Z:2G19 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-372-3p|1|0|4M1I18M|2G19|AACTTGCTGCGACATTTGAGCGT +188149-2_1 0 19 122108 255 23M * 0 0 GAAGTGCTTCGATTTTGGGGTGT * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-373-3p|0|0|23M|23|GAAGTGCTTCGATTTTGGGGTGT +270393-1_1 0 19 7590 255 23M * 0 0 TTTCAAGCCAGGGGGCGTTTTTC * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-498-5p|0|0|23M|23|TTTCAAGCCAGGGGGCGTTTTTC +610105-1_2 256 19 87 1 3M1I17M * 0 0 GAACAGTGCTGTGATAACTGA * MD:Z:11C3G4 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 YW:Z:hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4|GAACAGTGCTGTGATAACTGA +610105-1_2 0 19 2571 1 3M1I17M * 0 0 GAACAGTGCTGTGATAACTGA * MD:Z:11C3G4 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 YW:Z:hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4|GAACAGTGCTGTGATAACTGA +645839-1_3 0 19 89 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGA * MD:Z:20T NM:i:1 HI:i:1 YW:Z:hsa-miR-512-3p|0|-1|21M|20T|AAGTGCTGTCATAGCTGAGGA +645839-1_3 0 19 2573 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGA * MD:Z:20T NM:i:1 HI:i:3 YW:Z:hsa-miR-512-3p|0|-1|21M|20T|AAGTGCTGTCATAGCTGAGGA +645839-1_3 256 19 89 1 21M * 0 0 AAGTGCTGTCATAGCTGAGGA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 HI:i:2 YW:Z:hsa-miR-512-3p|0|-1|21M|20T0|AAGTGCTGTCATAGCTGAGGA +67830-4_3 256 19 89 1 21M * 0 0 AAGTGCTGTCATAGCTGAGGT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 HI:i:1 YW:Z:hsa-miR-512-3p|0|-1|21M|21|AAGTGCTGTCATAGCTGAGGT +67830-4_3 0 19 89 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGT * MD:Z:21 NM:i:0 HI:i:2 YW:Z:hsa-miR-512-3p|0|-1|21M|21|AAGTGCTGTCATAGCTGAGGT +67830-4_3 0 19 2573 255 21M * 0 0 AAGTGCTGTCATAGCTGAGGT * MD:Z:21 NM:i:0 HI:i:3 YW:Z:hsa-miR-512-3p|0|-1|21M|21|AAGTGCTGTCATAGCTGAGGT +535182-1_3 256 19 89 1 21M * 0 0 AAGTGCTTTCATAGCTGAGGT * MD:Z:7G13 NM:i:1 RG:Z:A1 YZ:Z:0 HI:i:1 YW:Z:hsa-miR-512-3p|0|-1|21M|7G13|AAGTGCTTTCATAGCTGAGGT +535182-1_3 0 19 89 255 21M * 0 0 AAGTGCTTTCATAGCTGAGGT * MD:Z:7G13 NM:i:1 HI:i:2 YW:Z:hsa-miR-512-3p|0|-1|21M|7G13|AAGTGCTTTCATAGCTGAGGT +535182-1_3 0 19 2573 255 21M * 0 0 AAGTGCTTTCATAGCTGAGGT * MD:Z:7G13 NM:i:1 HI:i:3 YW:Z:hsa-miR-512-3p|0|-1|21M|7G13|AAGTGCTTTCATAGCTGAGGT +766380-1_3 0 19 89 255 20M * 0 0 AAGTGCTGTCATCGCTGAGG * MD:Z:12A7 NM:i:1 HI:i:1 YW:Z:hsa-miR-512-3p|0|-2|20M|12A7|AAGTGCTGTCATCGCTGAGG +766380-1_3 256 19 89 1 20M * 0 0 AAGTGCTGTCATCGCTGAGG * MD:Z:12A7 NM:i:1 RG:Z:A1 YZ:Z:0 HI:i:2 YW:Z:hsa-miR-512-3p|0|-2|20M|12A7|AAGTGCTGTCATCGCTGAGG +766380-1_3 0 19 2573 255 20M * 0 0 AAGTGCTGTCATCGCTGAGG * MD:Z:12A7 NM:i:1 HI:i:3 YW:Z:hsa-miR-512-3p|0|-2|20M|12A7|AAGTGCTGTCATCGCTGAGG +67831-4_3 0 19 89 255 20M * 0 0 AAGTGCTGTCATAGCTGAGG * MD:Z:20 NM:i:0 HI:i:1 YW:Z:hsa-miR-512-3p|0|-2|20M|20|AAGTGCTGTCATAGCTGAGG +67831-4_3 256 19 89 1 20M * 0 0 AAGTGCTGTCATAGCTGAGG * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 HI:i:2 YW:Z:hsa-miR-512-3p|0|-2|20M|20|AAGTGCTGTCATAGCTGAGG +67831-4_3 0 19 2573 255 20M * 0 0 AAGTGCTGTCATAGCTGAGG * MD:Z:20 NM:i:0 HI:i:3 YW:Z:hsa-miR-512-3p|0|-2|20M|20|AAGTGCTGTCATAGCTGAGG +270395-1_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATCGCTGAGGTC * MD:Z:12A9 NM:i:1 HI:i:1 YW:Z:hsa-miR-512-3p|0|0|22M|12A9|AAGTGCTGTCATCGCTGAGGTC +270395-1_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATCGCTGAGGTC * MD:Z:12A9 NM:i:1 RG:Z:A1 YZ:Z:0 HI:i:2 YW:Z:hsa-miR-512-3p|0|0|22M|12A9|AAGTGCTGTCATCGCTGAGGTC +270395-1_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATCGCTGAGGTC * MD:Z:12A9 NM:i:1 HI:i:3 YW:Z:hsa-miR-512-3p|0|0|22M|12A9|AAGTGCTGTCATCGCTGAGGTC +773136-1_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATAGCTGCGGTC * MD:Z:17A4 NM:i:1 RG:Z:A1 YZ:Z:0 HI:i:1 YW:Z:hsa-miR-512-3p|0|0|22M|17A4|AAGTGCTGTCATAGCTGCGGTC +773136-1_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATAGCTGCGGTC * MD:Z:17A4 NM:i:1 HI:i:2 YW:Z:hsa-miR-512-3p|0|0|22M|17A4|AAGTGCTGTCATAGCTGCGGTC +773136-1_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATAGCTGCGGTC * MD:Z:17A4 NM:i:1 HI:i:3 YW:Z:hsa-miR-512-3p|0|0|22M|17A4|AAGTGCTGTCATAGCTGCGGTC +102065-3_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTT * MD:Z:21C NM:i:1 HI:i:1 YW:Z:hsa-miR-512-3p|0|0|22M|21C|AAGTGCTGTCATAGCTGCGGTT +102065-3_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTT * MD:Z:21C NM:i:1 HI:i:3 YW:Z:hsa-miR-512-3p|0|0|22M|21C|AAGTGCTGTCATAGCTGCGGTT +102065-3_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATAGCTGAGGTT * MD:Z:21C0 NM:i:1 RG:Z:A1 YZ:Z:0 HI:i:2 YW:Z:hsa-miR-512-3p|0|0|22M|21C0|AAGTGCTGTCATAGCTGCGGTT +37896-9_3 256 19 89 1 22M * 0 0 AAGTGCTGTCATAGCTGAGGTC * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 HI:i:1 YW:Z:hsa-miR-512-3p|0|0|22M|22|AAGTGCTGTCATAGCTGAGGTC +37896-9_3 0 19 89 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTC * MD:Z:22 NM:i:0 HI:i:2 YW:Z:hsa-miR-512-3p|0|0|22M|22|AAGTGCTGTCATAGCTGAGGTC +37896-9_3 0 19 2573 255 22M * 0 0 AAGTGCTGTCATAGCTGAGGTC * MD:Z:22 NM:i:0 HI:i:3 YW:Z:hsa-miR-512-3p|0|0|22M|22|AAGTGCTGTCATAGCTGAGGTC +334943-1_2 256 19 89 1 23M * 0 0 AAGTGCTGTCATAGCTGAGGTAG * MD:Z:21C0C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 YW:Z:hsa-miR-512-3p|0|1|23M|21C0C0|AAGTGCTGTCATAGCTGAGGTAG +334943-1_2 0 19 2573 1 23M * 0 0 AAGTGCTGTCATAGCTGAGGTAG * MD:Z:21C0C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 YW:Z:hsa-miR-512-3p|0|1|23M|21C0C0|AAGTGCTGTCATAGCTGAGGTAG +270396-1_3 0 19 89 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCT * MD:Z:22C NM:i:1 HI:i:2 YW:Z:hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT +270401-1_2 0 19 89 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCA * MD:Z:22C NM:i:1 NH:i:2 HI:i:1 YW:Z:hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA +270396-1_3 0 19 2573 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCT * MD:Z:22C NM:i:1 HI:i:3 YW:Z:hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT +270401-1_2 0 19 2573 255 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCA * MD:Z:22C NM:i:1 NH:i:2 HI:i:2 YW:Z:hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA +270396-1_3 256 19 89 1 23M * 0 0 AAGTGCTGTCATAGCTGAGGTCT * MD:Z:22C0 NM:i:1 RG:Z:A1 YZ:Z:0 HI:i:1 YW:Z:hsa-miR-512-3p|0|1|23M|22C0|AAGTGCTGTCATAGCTGAGGTCT +673650-1_2 256 19 89 1 23M * 0 0 AAGAGCTGTCATAGCTGAGGTCT * MD:Z:3T18C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 YW:Z:hsa-miR-512-3p|0|1|23M|3T18C0|AAGAGCTGTCATAGCTGAGGTCT +673650-1_2 0 19 2573 1 23M * 0 0 AAGAGCTGTCATAGCTGAGGTCT * MD:Z:3T18C0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:2 YW:Z:hsa-miR-512-3p|0|1|23M|3T18C0|AAGAGCTGTCATAGCTGAGGTCT +150819-2_3 256 19 53 1 21M * 0 0 ACTCAGCCTTGAGGGCACTTT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 HI:i:1 YW:Z:hsa-miR-512-5p|1|-1|21M|21|ACTCAGCCTTGAGGGCACTTT +150819-2_3 0 19 53 255 21M * 0 0 ACTCAGCCTTGAGGGCACTTT * MD:Z:21 NM:i:0 HI:i:2 YW:Z:hsa-miR-512-5p|1|-1|21M|21|ACTCAGCCTTGAGGGCACTTT +150819-2_3 0 19 2537 255 21M * 0 0 ACTCAGCCTTGAGGGCACTTT * MD:Z:21 NM:i:0 HI:i:3 YW:Z:hsa-miR-512-5p|1|-1|21M|21|ACTCAGCCTTGAGGGCACTTT +270402-1_3 0 19 53 255 20M * 0 0 ACTCAGCCTTGAGGGCACTT * MD:Z:20 NM:i:0 HI:i:1 YW:Z:hsa-miR-512-5p|1|-2|20M|20|ACTCAGCCTTGAGGGCACTT +270402-1_3 256 19 53 1 20M * 0 0 ACTCAGCCTTGAGGGCACTT * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 HI:i:2 YW:Z:hsa-miR-512-5p|1|-2|20M|20|ACTCAGCCTTGAGGGCACTT +270402-1_3 0 19 2537 255 20M * 0 0 ACTCAGCCTTGAGGGCACTT * MD:Z:20 NM:i:0 HI:i:3 YW:Z:hsa-miR-512-5p|1|-2|20M|20|ACTCAGCCTTGAGGGCACTT +752875-1_3 256 19 53 1 22M * 0 0 ACTCAGCCTTGAGGGCACTTTC * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 HI:i:1 YW:Z:hsa-miR-512-5p|1|0|22M|22|ACTCAGCCTTGAGGGCACTTTC +752875-1_3 0 19 53 255 22M * 0 0 ACTCAGCCTTGAGGGCACTTTC * MD:Z:22 NM:i:0 HI:i:2 YW:Z:hsa-miR-512-5p|1|0|22M|22|ACTCAGCCTTGAGGGCACTTTC +752875-1_3 0 19 2537 255 22M * 0 0 ACTCAGCCTTGAGGGCACTTTC * MD:Z:22 NM:i:0 HI:i:3 YW:Z:hsa-miR-512-5p|1|0|22M|22|ACTCAGCCTTGAGGGCACTTTC +369314-1_3 0 19 12413 255 21M * 0 0 GAGTGCCTTCTTTTGGAGCGT * MD:Z:21 NM:i:0 HI:i:1 YW:Z:hsa-miR-515-3p|0|-1|21M|21|GAGTGCCTTCTTTTGGAGCGT +369314-1_3 256 19 12413 1 21M * 0 0 GAGTGCCTTCTTTTGGAGCGT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 HI:i:2 YW:Z:hsa-miR-515-3p|0|-1|21M|21|GAGTGCCTTCTTTTGGAGCGT +369314-1_3 0 19 18419 255 21M * 0 0 GAGTGCCTTCTTTTGGAGCGT * MD:Z:21 NM:i:0 HI:i:3 YW:Z:hsa-miR-515-3p|0|-1|21M|21|GAGTGCCTTCTTTTGGAGCGT +54840-6_3 0 19 90116 255 22M * 0 0 TTCTCGAGGAAAGAAGCACTTT * MD:Z:22 NM:i:0 HI:i:1 YW:Z:hsa-miR-516a-5p|0|-1|22M|22|TTCTCGAGGAAAGAAGCACTTT +54840-6_3 256 19 90116 1 22M * 0 0 TTCTCGAGGAAAGAAGCACTTT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 HI:i:2 YW:Z:hsa-miR-516a-5p|0|-1|22M|22|TTCTCGAGGAAAGAAGCACTTT +54840-6_3 0 19 94508 255 22M * 0 0 TTCTCGAGGAAAGAAGCACTTT * MD:Z:22 NM:i:0 HI:i:3 YW:Z:hsa-miR-516a-5p|0|-1|22M|22|TTCTCGAGGAAAGAAGCACTTT +423555-1_3 256 19 90117 1 21M * 0 0 TCTCGAGGAAAGAAGCACTTT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 HI:i:1 YW:Z:hsa-miR-516a-5p|1|-1|21M|21|TCTCGAGGAAAGAAGCACTTT +423555-1_3 0 19 90117 255 21M * 0 0 TCTCGAGGAAAGAAGCACTTT * MD:Z:21 NM:i:0 HI:i:2 YW:Z:hsa-miR-516a-5p|1|-1|21M|21|TCTCGAGGAAAGAAGCACTTT +423555-1_3 0 19 94509 255 21M * 0 0 TCTCGAGGAAAGAAGCACTTT * MD:Z:21 NM:i:0 HI:i:3 YW:Z:hsa-miR-516a-5p|1|-1|21M|21|TCTCGAGGAAAGAAGCACTTT +270365-1_3 0 19 58817 255 19M * 0 0 ATCTGGAGGTAAGAAGCAA * MD:Z:18C NM:i:1 HI:i:2 YW:Z:hsa-miR-516b-5p|0|-3|19M|18C|ATCTGGAGGTAAGAAGCAA +270365-1_3 0 19 70220 255 19M * 0 0 ATCTGGAGGTAAGAAGCAA * MD:Z:18C NM:i:1 HI:i:3 YW:Z:hsa-miR-516b-5p|0|-3|19M|18C|ATCTGGAGGTAAGAAGCAA +270365-1_3 256 19 58817 1 19M * 0 0 ATCTGGAGGTAAGAAGCAA * MD:Z:18C0 NM:i:1 RG:Z:A1 YZ:Z:0 HI:i:1 YW:Z:hsa-miR-516b-5p|0|-3|19M|18C0|ATCTGGAGGTAAGAAGCAA +270366-1_3 256 19 58817 1 22M * 0 0 ATCTGGAGGTCAGAAGCACTTT * MD:Z:10A11 NM:i:1 RG:Z:A1 YZ:Z:0 HI:i:1 YW:Z:hsa-miR-516b-5p|0|0|22M|10A11|ATCTGGAGGTCAGAAGCACTTT +270366-1_3 0 19 58817 255 22M * 0 0 ATCTGGAGGTCAGAAGCACTTT * MD:Z:10A11 NM:i:1 HI:i:2 YW:Z:hsa-miR-516b-5p|0|0|22M|10A11|ATCTGGAGGTCAGAAGCACTTT +270366-1_3 0 19 70220 255 22M * 0 0 ATCTGGAGGTCAGAAGCACTTT * MD:Z:10A11 NM:i:1 HI:i:3 YW:Z:hsa-miR-516b-5p|0|0|22M|10A11|ATCTGGAGGTCAGAAGCACTTT +86082-3_3 256 19 58817 1 22M * 0 0 ATCTGGAGGTAAGAAGCACTTT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 HI:i:1 YW:Z:hsa-miR-516b-5p|0|0|22M|22|ATCTGGAGGTAAGAAGCACTTT +86082-3_3 0 19 58817 255 22M * 0 0 ATCTGGAGGTAAGAAGCACTTT * MD:Z:22 NM:i:0 HI:i:2 YW:Z:hsa-miR-516b-5p|0|0|22M|22|ATCTGGAGGTAAGAAGCACTTT +86082-3_3 0 19 70220 255 22M * 0 0 ATCTGGAGGTAAGAAGCACTTT * MD:Z:22 NM:i:0 HI:i:3 YW:Z:hsa-miR-516b-5p|0|0|22M|22|ATCTGGAGGTAAGAAGCACTTT +270359-1_5 0 19 45641 255 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T NM:i:1 NH:i:5 HI:i:1 YW:Z:hsa-miR-517-5p|-1|0|23M|22T|CCCTCTAGATGGAAGCACTGTCA +270359-1_5 0 19 54440 255 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T NM:i:1 NH:i:5 HI:i:2 YW:Z:hsa-miR-517-5p|-1|0|23M|22T|CCCTCTAGATGGAAGCACTGTCA +270359-1_5 0 19 74691 255 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T NM:i:1 NH:i:5 HI:i:4 YW:Z:hsa-miR-517-5p|-1|0|23M|22T|CCCTCTAGATGGAAGCACTGTCA +270359-1_5 256 19 54440 1 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:3 YW:Z:hsa-miR-517-5p|-1|0|23M|22T0|CCCTCTAGATGGAAGCACTGTCA +270359-1_5 256 19 74691 1 23M * 0 0 CCCTCTAGATGGAAGCACTGTCA * MD:Z:22T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:5 YW:Z:hsa-miR-517-5p|-1|0|23M|22T0|CCCTCTAGATGGAAGCACTGTCA +752904-1_3 0 19 45646 1 6M1D13M * 0 0 GAGATGAAGCACTGTCTGT * MD:Z:0T5^G13 NM:i:2 RG:Z:A1 YZ:Z:0 HI:i:1 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|0T5^G13|GAGATGAAGCACTGTCTGT +752904-1_3 256 19 54445 1 6M1D13M * 0 0 GAGATGAAGCACTGTCTGT * MD:Z:0T5^G13 NM:i:2 RG:Z:A1 YZ:Z:0 HI:i:2 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|0T5^G13|GAGATGAAGCACTGTCTGT +752904-1_3 256 19 74696 1 6M1D13M * 0 0 GAGATGAAGCACTGTCTGT * MD:Z:0T5^G13 NM:i:2 RG:Z:A1 YZ:Z:0 HI:i:3 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|0T5^G13|GAGATGAAGCACTGTCTGT +105051-3_3 0 19 45646 1 6M1D13M * 0 0 TAGATGAAGCACTGTATGT * MD:Z:6^G9C3 NM:i:2 RG:Z:A1 YZ:Z:0 HI:i:1 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|6^G9C3|TAGATGAAGCACTGTATGT +105051-3_3 256 19 54445 1 6M1D13M * 0 0 TAGATGAAGCACTGTATGT * MD:Z:6^G9C3 NM:i:2 RG:Z:A1 YZ:Z:0 HI:i:2 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|6^G9C3|TAGATGAAGCACTGTATGT +105051-3_3 256 19 74696 1 6M1D13M * 0 0 TAGATGAAGCACTGTATGT * MD:Z:6^G9C3 NM:i:2 RG:Z:A1 YZ:Z:0 HI:i:3 YW:Z:hsa-miR-517-5p|4|2|6M1D13M|6^G9C3|TAGATGAAGCACTGTATGT +120530-2_3 256 19 45681 1 21M * 0 0 ATCGTGCATCCCTTTAGAGTG * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 HI:i:1 YW:Z:hsa-miR-517a-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG +120530-2_3 0 19 45681 255 21M * 0 0 ATCGTGCATCCCTTTAGAGTG * MD:Z:21 NM:i:0 HI:i:2 YW:Z:hsa-miR-517a-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG +67957-4_3 0 19 45681 255 22M * 0 0 ATCGTGCATCCCTTTAGAGTGT * MD:Z:22 NM:i:0 HI:i:1 YW:Z:hsa-miR-517a-3p|0|0|22M|22|ATCGTGCATCCCTTTAGAGTGT +67957-4_3 256 19 45681 1 22M * 0 0 ATCGTGCATCCCTTTAGAGTGT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 HI:i:2 YW:Z:hsa-miR-517a-3p|0|0|22M|22|ATCGTGCATCCCTTTAGAGTGT +120530-2_3 0 19 54478 255 21M * 0 0 ATCGTGCATCCCTTTAGAGTG * MD:Z:21 NM:i:0 HI:i:3 YW:Z:hsa-miR-517b-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG +67957-4_3 0 19 54478 255 22M * 0 0 ATCGTGCATCCCTTTAGAGTGT * MD:Z:22 NM:i:0 HI:i:3 YW:Z:hsa-miR-517b-3p|0|0|22M|22|ATCGTGCATCCCTTTAGAGTGT +447402-1_1 0 19 36147 255 22M * 0 0 CAAAGCGCTCCCCTTTAGAGGT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-518b|0|0|22M|22|CAAAGCGCTCCCCTTTAGAGGT +270377-1_1 0 19 42119 255 21M * 0 0 CTCTGGAGGGAAGCACTTTCT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-518c-5p|1|-1|21M|21|CTCTGGAGGGAAGCACTTTCT +751085-1_1 0 19 42119 255 20M * 0 0 CTCTGGAGGGAAGCACTTTA * MD:Z:19C NH:i:1 NM:i:1 YW:Z:hsa-miR-518c-5p|1|-2|20M|19C|CTCTGGAGGGAAGCACTTTA +270378-1_1 0 19 42119 255 22M * 0 0 CTCTGGAGGGAAGCACTTTCTG * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-518c-5p|1|0|22M|22|CTCTGGAGGGAAGCACTTTCTG +120527-2_9 0 19 68252 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:8 YW:Z:hsa-miR-518d-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA +120527-2_9 256 19 68252 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:9 YW:Z:hsa-miR-518d-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA +95680-3_9 0 19 68252 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:8 YW:Z:hsa-miR-518d-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +95680-3_9 256 19 68252 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:9 YW:Z:hsa-miR-518d-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +270379-1_5 256 19 68252 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:5 YW:Z:hsa-miR-518d-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA +139675-2_9 256 19 68252 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:8 YW:Z:hsa-miR-518d-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC +139675-2_9 0 19 68252 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:9 YW:Z:hsa-miR-518d-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC +531738-1_9 256 19 68252 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:8 YW:Z:hsa-miR-518d-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT +531738-1_9 0 19 68252 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:9 YW:Z:hsa-miR-518d-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT +270381-1_7 256 19 68252 1 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:7 HI:i:6 YW:Z:hsa-miR-518d-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTG +270381-1_7 0 19 68252 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 NH:i:7 HI:i:7 YW:Z:hsa-miR-518d-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTG +270360-1_1 0 19 63251 255 21M * 0 0 AAAGCGCTTCCCTTCAGAGTG * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-518e-3p|0|0|21M|21|AAAGCGCTTCCCTTCAGAGTG +676180-1_6 0 19 63213 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:4 YW:Z:hsa-miR-518e-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA +18915-24_11 0 19 63213 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:7 YW:Z:hsa-miR-518e-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +270361-1_11 0 19 63213 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:7 YW:Z:hsa-miR-518e-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA +630277-1_11 0 19 63213 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:7 YW:Z:hsa-miR-518e-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +67687-4_11 0 19 63213 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:7 YW:Z:hsa-miR-518e-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +84523-3_11 0 19 63213 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:7 YW:Z:hsa-miR-518e-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +120527-2_9 0 19 33390 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:1 YW:Z:hsa-miR-518f-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA +95680-3_9 0 19 33390 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:1 YW:Z:hsa-miR-518f-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +270379-1_5 0 19 33390 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:1 YW:Z:hsa-miR-518f-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA +139675-2_9 0 19 33390 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:1 YW:Z:hsa-miR-518f-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC +531738-1_9 0 19 33390 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:1 YW:Z:hsa-miR-518f-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT +347693-1_1 0 19 33390 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTC * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-518f-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTC +270348-1_3 0 19 85809 255 22M * 0 0 AAATTGCATCCTTTTAGAGTGT * MD:Z:3G18 NM:i:1 HI:i:1 YW:Z:hsa-miR-519a-3p|0|0|22M|3G18|AAATTGCATCCTTTTAGAGTGT +270348-1_3 0 19 95757 255 22M * 0 0 AAATTGCATCCTTTTAGAGTGT * MD:Z:3G18 NM:i:1 HI:i:2 YW:Z:hsa-miR-519a-3p|0|0|22M|3G18|AAATTGCATCCTTTTAGAGTGT +270348-1_3 256 19 95757 1 22M * 0 0 AAATTGCATCCTTTTAGAGTGT * MD:Z:3G18 NM:i:1 RG:Z:A1 YZ:Z:0 HI:i:3 YW:Z:hsa-miR-519a-3p|0|0|22M|3G18|AAATTGCATCCTTTTAGAGTGT +270357-1_1 0 19 85770 255 22M * 0 0 ACTCTAGAGGGAAGCGCTTTCA * MD:Z:21T NH:i:1 NM:i:1 YW:Z:hsa-miR-519a-5p|-1|-1|22M|21T|ACTCTAGAGGGAAGCGCTTTCA +58870-5_1 0 19 85770 255 22M * 0 0 ACTCTAGAGGGAAGCGCTTTCT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-519a-5p|-1|-1|22M|22|ACTCTAGAGGGAAGCGCTTTCT +270354-1_1 0 19 85770 255 20M * 0 0 ACTCTAGAGGGAAGCGCTTT * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-519a-5p|-1|-3|20M|20|ACTCTAGAGGGAAGCGCTTT +676180-1_6 256 19 85771 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:6 YW:Z:hsa-miR-519a-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA +18915-24_11 0 19 85771 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:10 YW:Z:hsa-miR-519a-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +18915-24_11 256 19 85771 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 YW:Z:hsa-miR-519a-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +270361-1_11 0 19 85771 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:10 YW:Z:hsa-miR-519a-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA +270361-1_11 256 19 85771 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 YW:Z:hsa-miR-519a-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA +630277-1_11 0 19 85771 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:10 YW:Z:hsa-miR-519a-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +630277-1_11 256 19 85771 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 YW:Z:hsa-miR-519a-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +67687-4_11 256 19 85771 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:10 YW:Z:hsa-miR-519a-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +67687-4_11 0 19 85771 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:11 YW:Z:hsa-miR-519a-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +84523-3_11 0 19 85771 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:10 YW:Z:hsa-miR-519a-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +84523-3_11 256 19 85771 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:11 YW:Z:hsa-miR-519a-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +676180-1_6 256 19 28585 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:2 YW:Z:hsa-miR-519b-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA +18915-24_11 256 19 28585 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:3 YW:Z:hsa-miR-519b-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +18915-24_11 0 19 28585 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:4 YW:Z:hsa-miR-519b-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +270361-1_11 0 19 28585 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:3 YW:Z:hsa-miR-519b-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA +270361-1_11 256 19 28585 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:4 YW:Z:hsa-miR-519b-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA +630277-1_11 256 19 28585 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:3 YW:Z:hsa-miR-519b-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +630277-1_11 0 19 28585 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:4 YW:Z:hsa-miR-519b-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +67687-4_11 256 19 28585 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:3 YW:Z:hsa-miR-519b-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +67687-4_11 0 19 28585 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:4 YW:Z:hsa-miR-519b-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +84523-3_11 0 19 28585 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:3 YW:Z:hsa-miR-519b-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +84523-3_11 256 19 28585 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:4 YW:Z:hsa-miR-519b-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +676180-1_6 256 19 19844 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:1 YW:Z:hsa-miR-519c-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA +18915-24_11 0 19 19844 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:1 YW:Z:hsa-miR-519c-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +18915-24_11 256 19 19844 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:2 YW:Z:hsa-miR-519c-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +270361-1_11 0 19 19844 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:2 YW:Z:hsa-miR-519c-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA +270361-1_11 256 19 19844 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:1 YW:Z:hsa-miR-519c-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA +630277-1_11 0 19 19844 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:1 YW:Z:hsa-miR-519c-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +630277-1_11 256 19 19844 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:2 YW:Z:hsa-miR-519c-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +67687-4_11 0 19 19844 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:1 YW:Z:hsa-miR-519c-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +67687-4_11 256 19 19844 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:2 YW:Z:hsa-miR-519c-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +84523-3_11 256 19 19844 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:1 YW:Z:hsa-miR-519c-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +84523-3_11 0 19 19844 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:2 YW:Z:hsa-miR-519c-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +270371-1_1 0 19 46760 255 21M * 0 0 CAAAGTGCCTCCCTTTAGAGT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-519d-3p|0|-1|21M|21|CAAAGTGCCTCCCTTTAGAGT +153079-2_1 0 19 46760 255 20M * 0 0 CAAAGTGCCTCCCTTTAGAG * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-519d-3p|0|-2|20M|20|CAAAGTGCCTCCCTTTAGAG +67829-4_1 0 19 24293 255 22M * 0 0 AAAGTGCTTCCCTTTGGACTGT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-520a-3p|0|0|22M|22|AAAGTGCTTCCCTTTGGACTGT +655140-1_1 0 19 24293 255 22M * 0 0 AAATTGCTTCCCTTTGGACTGT * MD:Z:3G18 NH:i:1 NM:i:1 YW:Z:hsa-miR-520a-3p|0|0|22M|3G18|AAAGTGCTTCCCTTTGGACTGT +485300-1_1 0 19 24293 255 23M * 0 0 AAAGTGCTTCCCTTTGGACTGTA * MD:Z:22T NH:i:1 NM:i:1 YW:Z:hsa-miR-520a-3p|0|1|23M|22T|AAAGTGCTTCCCTTTGGACTGTA +729311-1_1 0 19 24255 1 21M * 0 0 CTCCAGAGGGAAGTACTTTGA * HI:i:0 MD:Z:19C0T0 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|0|21M|19C0T0|CTCCAGAGGGAAGTACTTTGA +720817-1_1 0 19 24255 255 21M * 0 0 CTCCAGAGGGAAGTACTTTCG * MD:Z:20T NM:i:1 NH:i:1 HI:i:1 YW:Z:hsa-miR-520a-5p|0|0|21M|20T|CTCCAGAGGGAAGTACTTTCG +120535-2_1 0 19 24255 255 21M * 0 0 CTCCAGAGGGAAGTACTTTCT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-520a-5p|0|0|21M|21|CTCCAGAGGGAAGTACTTTCT +228043-1_1 0 19 24255 1 19M1D2M * 0 0 CTCCAGAGGGAAGTACTTTAG * HI:i:0 MD:Z:19^C0T1 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1|CTCCAGAGGGAAGTACTTTAG +609803-1_1 0 19 24255 1 19M1I3M * 0 0 CTCCAGAGGGAAGTACTTTGAAG * HI:i:0 MD:Z:19C0T1 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|1|19M1I3M|19C0T1|CTCCAGAGGGAAGTACTTTGAAG +101076-3_1 0 19 24255 1 19M1D3M * 0 0 CTCCAGAGGGAAGTACTTTAGA * HI:i:0 MD:Z:19^C0T1T0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0|CTCCAGAGGGAAGTACTTTAGA +127441-2_1 0 19 24255 1 19M1D3M * 0 0 CTCCAGAGGGAAGTACTTTTAA * HI:i:0 MD:Z:19^C1G0T0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0|CTCCAGAGGGAAGTACTTTTAA +103161-3_1 0 19 24255 1 20M1D2M * 0 0 CTCCAGAGGGAAGTACTTTCGA * HI:i:0 MD:Z:20^T1T0 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0|CTCCAGAGGGAAGTACTTTCGA +478794-1_1 0 19 24255 1 23M * 0 0 CTCCAGAGGGAAGTACTTTAAGA * HI:i:0 MD:Z:19C0T1T0 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520a-5p|0|2|23M|19C0T1T0|CTCCAGAGGGAAGTACTTTAAGA +744127-1_5 0 19 34626 255 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 NH:i:5 HI:i:2 YW:Z:hsa-miR-520b-3p|-1|-1|21M|21|GAAAGTGCTTCCTTTTAGAGG +744127-1_5 256 19 34626 1 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:3 YW:Z:hsa-miR-520b-3p|-1|-1|21M|21|GAAAGTGCTTCCTTTTAGAGG +120532-2_3 0 19 34627 255 22M * 0 0 AAAGTGCTTCCTTTTAGAGGGT * MD:Z:22 NM:i:0 HI:i:1 YW:Z:hsa-miR-520b-3p|0|1|22M|22|AAAGTGCTTCCTTTTAGAGGGT +744127-1_5 0 19 40865 255 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 NH:i:5 HI:i:4 YW:Z:hsa-miR-520c-3p|-1|-2|21M|21|GAAAGTGCTTCCTTTTAGAGG +744127-1_5 256 19 40865 1 21M * 0 0 GAAAGTGCTTCCTTTTAGAGG * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:5 YW:Z:hsa-miR-520c-3p|-1|-2|21M|21|GAAAGTGCTTCCTTTTAGAGG +120532-2_3 256 19 40866 1 22M * 0 0 AAAGTGCTTCCTTTTAGAGGGT * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 HI:i:2 YW:Z:hsa-miR-520c-3p|0|0|22M|22|AAAGTGCTTCCTTTTAGAGGGT +120532-2_3 0 19 40866 255 22M * 0 0 AAAGTGCTTCCTTTTAGAGGGT * MD:Z:22 NM:i:0 HI:i:3 YW:Z:hsa-miR-520c-3p|0|0|22M|22|AAAGTGCTTCCTTTTAGAGGGT +120527-2_9 0 19 40828 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:4 YW:Z:hsa-miR-520c-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA +120527-2_9 256 19 40828 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:5 YW:Z:hsa-miR-520c-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA +95680-3_9 256 19 40828 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:4 YW:Z:hsa-miR-520c-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +95680-3_9 0 19 40828 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:5 YW:Z:hsa-miR-520c-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +270379-1_5 256 19 40828 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:3 YW:Z:hsa-miR-520c-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA +139675-2_9 256 19 40828 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:4 YW:Z:hsa-miR-520c-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC +139675-2_9 0 19 40828 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:5 YW:Z:hsa-miR-520c-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC +531738-1_9 256 19 40828 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:4 YW:Z:hsa-miR-520c-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT +531738-1_9 0 19 40828 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:5 YW:Z:hsa-miR-520c-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT +270381-1_7 256 19 40828 1 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:7 HI:i:3 YW:Z:hsa-miR-520c-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTG +270381-1_7 0 19 40828 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 NH:i:7 HI:i:4 YW:Z:hsa-miR-520c-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTG +361022-1_1 0 19 9124 255 21M * 0 0 AAAGTGCTTCCTTTTTGAGGG * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-520e-3p|0|0|21M|21|AAAGTGCTTCCTTTTTGAGGG +772976-1_1 0 19 9089 1 7M1I9M * 0 0 AAAATGGGAAGCAGTTT * HI:i:0 MD:Z:2G13 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-520e-5p|3|-3|7M1I9M|2G13|AAAATGGGAAGCAGTTT +270368-1_3 0 19 55581 255 21M * 0 0 CAAAGTGCTTCCCTTTAGAGT * MD:Z:21 NM:i:0 HI:i:1 YW:Z:hsa-miR-520g-3p|1|-2|21M|21|CAAAGTGCTTCCCTTTAGAGT +270369-1_1 0 19 55581 255 23M * 0 0 CAAAGTGCTTCCCTTTAGAGTGT * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-520g-3p|1|0|23M|23|CAAAGTGCTTCCCTTTAGAGTGT +138559-2_2 0 19 55539 1 12M1D2M1D2M1I6M * 0 0 CCCTCTAGAGGAGCCTGTTCTGT * MD:Z:12^A2^A8 NM:i:3 RG:Z:A1 YZ:Z:0 NH:i:2 HI:i:1 YW:Z:hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8|CCCTCTAGAGGAGCCTGTTCTGT +270368-1_3 0 19 75927 255 21M * 0 0 CAAAGTGCTTCCCTTTAGAGT * MD:Z:21 NM:i:0 HI:i:2 YW:Z:hsa-miR-520h|1|0|21M|21|CAAAGTGCTTCCCTTTAGAGT +270368-1_3 256 19 75927 1 21M * 0 0 CAAAGTGCTTCCCTTTAGAGT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 HI:i:3 YW:Z:hsa-miR-520h|1|0|21M|21|CAAAGTGCTTCCCTTTAGAGT +270358-1_1 0 19 84624 1 22M * 0 0 AGAATGGTTCCCTTTAGAGTGT * MD:Z:1A20 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:1 HI:i:1 YW:Z:hsa-miR-522-3p|0|0|22M|1A20|AGAATGGTTCCCTTTAGAGTGT +676180-1_6 256 19 84586 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:5 YW:Z:hsa-miR-522-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA +18915-24_11 0 19 84586 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:8 YW:Z:hsa-miR-522-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +18915-24_11 256 19 84586 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:9 YW:Z:hsa-miR-522-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +270361-1_11 0 19 84586 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:9 YW:Z:hsa-miR-522-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA +270361-1_11 256 19 84586 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:8 YW:Z:hsa-miR-522-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA +630277-1_11 256 19 84586 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:8 YW:Z:hsa-miR-522-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +630277-1_11 0 19 84586 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:9 YW:Z:hsa-miR-522-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +67687-4_11 0 19 84586 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:8 YW:Z:hsa-miR-522-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +67687-4_11 256 19 84586 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:9 YW:Z:hsa-miR-522-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +84523-3_11 256 19 84586 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:8 YW:Z:hsa-miR-522-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +84523-3_11 0 19 84586 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:9 YW:Z:hsa-miR-522-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +676180-1_6 256 19 31760 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTAA * MD:Z:19C0T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:6 HI:i:3 YW:Z:hsa-miR-523-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA +18915-24_11 256 19 31760 1 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 YW:Z:hsa-miR-523-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +18915-24_11 0 19 31760 255 21M * 0 0 CTCTAGAGGGAAGCGCTTTCT * MD:Z:21 NM:i:0 NH:i:11 HI:i:6 YW:Z:hsa-miR-523-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +270361-1_11 0 19 31760 255 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C NM:i:1 NH:i:11 HI:i:6 YW:Z:hsa-miR-523-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA +270361-1_11 256 19 31760 1 20M * 0 0 CTCTAGAGGGAAGCGCTTTA * MD:Z:19C0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 YW:Z:hsa-miR-523-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA +630277-1_11 256 19 31760 1 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 YW:Z:hsa-miR-523-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +630277-1_11 0 19 31760 255 19M * 0 0 CTCTAGAGGGAAGCGCTTT * MD:Z:19 NM:i:0 NH:i:11 HI:i:6 YW:Z:hsa-miR-523-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT +67687-4_11 256 19 31760 1 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:5 YW:Z:hsa-miR-523-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +67687-4_11 0 19 31760 255 22M * 0 0 CTCTAGAGGGAAGCGCTTTCTG * MD:Z:22 NM:i:0 NH:i:11 HI:i:6 YW:Z:hsa-miR-523-5p|0|0|22M|22|CTCTAGAGGGAAGCGCTTTCTG +84523-3_11 0 19 31760 255 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 NH:i:11 HI:i:5 YW:Z:hsa-miR-523-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +84523-3_11 256 19 31760 1 23M * 0 0 CTCTAGAGGGAAGCGCTTTCTGT * MD:Z:23 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:11 HI:i:6 YW:Z:hsa-miR-523-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT +270375-1_1 0 19 44377 255 21M * 0 0 CTACAAAGGGAAGCACTTTCT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-524-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT +270376-1_1 0 19 44377 255 20M * 0 0 CTACAAAGGGAAGCACTTTC * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-524-5p|0|-2|20M|20|CTACAAAGGGAAGCACTTTC +57516-5_1 0 19 30907 255 20M * 0 0 CTCCAGAGGGATGCACTTTC * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-525-5p|0|-1|20M|20|CTCCAGAGGGATGCACTTTC +102026-3_1 0 19 30907 255 21M * 0 0 CTCCAGAGGGATGCACTTTCT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-525-5p|0|0|21M|21|CTCCAGAGGGATGCACTTTCT +120527-2_9 0 19 39626 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:3 YW:Z:hsa-miR-526a-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA +120527-2_9 0 19 60288 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T NM:i:1 NH:i:9 HI:i:7 YW:Z:hsa-miR-526a-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA +120527-2_9 256 19 39626 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:2 YW:Z:hsa-miR-526a-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA +120527-2_9 256 19 60288 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCA * MD:Z:20T0 NM:i:1 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:6 YW:Z:hsa-miR-526a-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA +95680-3_9 256 19 39626 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:2 YW:Z:hsa-miR-526a-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +95680-3_9 0 19 39626 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:3 YW:Z:hsa-miR-526a-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +95680-3_9 256 19 60288 1 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:6 YW:Z:hsa-miR-526a-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +95680-3_9 0 19 60288 255 21M * 0 0 CTCTAGAGGGAAGCACTTTCT * MD:Z:21 NM:i:0 NH:i:9 HI:i:7 YW:Z:hsa-miR-526a-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT +270379-1_5 256 19 39626 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:2 YW:Z:hsa-miR-526a-5p|0|-1|21M|3T16T0|CTCTAGAGGGAAGCACTTTCA +270379-1_5 256 19 60288 1 21M * 0 0 CTCGAGAGGGAAGCACTTTCA * MD:Z:3T16T0 NM:i:2 RG:Z:A1 YZ:Z:0 NH:i:5 HI:i:4 YW:Z:hsa-miR-526a-5p|0|-1|21M|3T16T0|CTCTAGAGGGAAGCACTTTCA +139675-2_9 0 19 39626 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:2 YW:Z:hsa-miR-526a-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC +139675-2_9 256 19 39626 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:3 YW:Z:hsa-miR-526a-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC +139675-2_9 0 19 60288 255 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 NH:i:9 HI:i:6 YW:Z:hsa-miR-526a-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC +139675-2_9 256 19 60288 1 20M * 0 0 CTCTAGAGGGAAGCACTTTC * MD:Z:20 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:7 YW:Z:hsa-miR-526a-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC +531738-1_9 0 19 39626 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:2 YW:Z:hsa-miR-526a-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT +531738-1_9 256 19 39626 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:3 YW:Z:hsa-miR-526a-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT +531738-1_9 0 19 60288 255 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 NH:i:9 HI:i:6 YW:Z:hsa-miR-526a-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT +531738-1_9 256 19 60288 1 19M * 0 0 CTCTAGAGGGAAGCACTTT * MD:Z:19 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:9 HI:i:7 YW:Z:hsa-miR-526a-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT +270381-1_7 0 19 39626 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 NH:i:7 HI:i:1 YW:Z:hsa-miR-526a-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTG +270381-1_7 256 19 39626 1 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 RG:Z:A1 YZ:Z:0 NH:i:7 HI:i:2 YW:Z:hsa-miR-526a-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTG +270381-1_7 0 19 60288 255 22M * 0 0 CTCTAGAGGGAAGCACTTTCTG * MD:Z:22 NM:i:0 NH:i:7 HI:i:5 YW:Z:hsa-miR-526a-5p|0|0|22M|22|CTCTAGAGGGAAGCACTTTCTG diff --git a/scripts/tests/files/iso_mirna_quantification b/scripts/tests/files/iso_mirna_quantification index 634dfa9..984b6d8 100644 --- a/scripts/tests/files/iso_mirna_quantification +++ b/scripts/tests/files/iso_mirna_quantification @@ -1,157 +1,160 @@ -hsa-miR-1323|0|-1|21M|21 1.0 +hsa-miR-1323|0|-1|21M|21|TCAAAACTGAGGGGCATTTTC 1.0 hsa-miR-1323 1.0 hsa-miR-371a-5p 1.0 -hsa-miR-371a-5p|0|3|23M|17A3T0C0 1.0 -hsa-miR-371b-3p|0|-1|22M|22 2.0 -hsa-miR-372-3p|0|-1|22M|0A0A2T17 1.0 -hsa-miR-372-3p|0|-1|22M|22 4.0 -hsa-miR-372-3p|0|-1|22M|3G18 3.0 -hsa-miR-372-3p|0|0|23M|1A20T0 1.0 -hsa-miR-372-3p|0|0|23M|22T 2.0 +hsa-miR-371a-5p|0|3|23M|17A3T0C0|ACTCAAACTGTGGGGGCACTTAG 1.0 +hsa-miR-371b-3p|0|-1|22M|22|GCACTCAAACTGTGGGGGCACT 2.0 +hsa-miR-372-3p|0|-1|22M|0A0A2T17|CGAGCGCTGCGACATTTGAGCG 1.0 +hsa-miR-372-3p|0|-1|22M|22|AAAGTGCTGCGACATTTGAGCG 4.0 +hsa-miR-372-3p|0|-1|22M|3G18|AAATTGCTGCGACATTTGAGCG 3.0 +hsa-miR-372-3p|0|0|23M|1A20T0|AGAGTGCTGCGACATTTGAGCGA 1.0 +hsa-miR-372-3p|0|0|23M|22T|AAAGTGCTGCGACATTTGAGCGA 2.0 hsa-miR-372-3p 1.0 -hsa-miR-372-3p|0|0|23M|3G19 1.0 -hsa-miR-372-3p|1|0|21M1I1M|23 1.0 -hsa-miR-372-3p|1|0|22M|22 1.0 -hsa-miR-372-3p|1|0|4M1I18M|2G19 1.0 +hsa-miR-372-3p|0|0|23M|3G19|AAATTGCTGCGACATTTGAGCGT 1.0 +hsa-miR-372-3p|1|0|21M1I1M|23|AAGTGCTGCGACATTTGAGCGAT 1.0 +hsa-miR-372-3p|1|0|22M|22|AAGTGCTGCGACATTTGAGCGT 1.0 +hsa-miR-372-3p|1|0|4M1I18M|2G19|AACTTGCTGCGACATTTGAGCGT 1.0 hsa-miR-373-3p 2.0 hsa-miR-498-5p 1.0 -hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4 1.0 -hsa-miR-512-3p|0|-1|21M|20T 0.6666666666666666 -hsa-miR-512-3p|0|-1|21M|20T0 0.3333333333333333 -hsa-miR-512-3p|0|-1|21M|21 4.0 -hsa-miR-512-3p|0|-1|21M|7G13 1.0 -hsa-miR-512-3p|0|-2|20M|12A7 1.0 -hsa-miR-512-3p|0|-2|20M|20 4.0 -hsa-miR-512-3p|0|0|22M|12A9 1.0 -hsa-miR-512-3p|0|0|22M|17A4 1.0 -hsa-miR-512-3p|0|0|22M|21C 2.0 -hsa-miR-512-3p|0|0|22M|21C0 1.0 +hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4|GAACAGTGCTGTGATAACTGA 1.0 +hsa-miR-512-3p|0|-1|21M|20T|AAGTGCTGTCATAGCTGAGGA 0.6666666666666666 +hsa-miR-512-3p|0|-1|21M|20T0|AAGTGCTGTCATAGCTGAGGA 0.3333333333333333 +hsa-miR-512-3p|0|-1|21M|21|AAGTGCTGTCATAGCTGAGGT 4.0 +hsa-miR-512-3p|0|-1|21M|7G13|AAGTGCTTTCATAGCTGAGGT 1.0 +hsa-miR-512-3p|0|-2|20M|12A7|AAGTGCTGTCATCGCTGAGG 1.0 +hsa-miR-512-3p|0|-2|20M|20|AAGTGCTGTCATAGCTGAGG 4.0 +hsa-miR-512-3p|0|0|22M|12A9|AAGTGCTGTCATCGCTGAGGTC 1.0 +hsa-miR-512-3p|0|0|22M|17A4|AAGTGCTGTCATAGCTGCGGTC 1.0 +hsa-miR-512-3p|0|0|22M|21C|AAGTGCTGTCATAGCTGCGGTT 2.0 +hsa-miR-512-3p|0|0|22M|21C0|AAGTGCTGTCATAGCTGCGGTT 1.0 hsa-miR-512-3p 9.0 -hsa-miR-512-3p|0|1|23M|21C0C0 1.0 -hsa-miR-512-3p|0|1|23M|22C 1.6666666666666665 -hsa-miR-512-3p|0|1|23M|22C0 0.3333333333333333 -hsa-miR-512-3p|0|1|23M|3T18C0 1.0 -hsa-miR-512-5p|1|-1|21M|21 2.0 -hsa-miR-512-5p|1|-2|20M|20 1.0 -hsa-miR-512-5p|1|0|22M|22 1.0 -hsa-miR-515-3p|0|-1|21M|21 1.0 -hsa-miR-516a-5p|0|-1|22M|22 6.0 -hsa-miR-516a-5p|1|-1|21M|21 1.0 -hsa-miR-516b-5p|0|-3|19M|18C 0.6666666666666666 -hsa-miR-516b-5p|0|-3|19M|18C0 0.3333333333333333 -hsa-miR-516b-5p|0|0|22M|10A11 1.0 +hsa-miR-512-3p|0|1|23M|21C0C0|AAGTGCTGTCATAGCTGAGGTAG 1.0 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT 0.3333333333333333 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA 0.5 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT 0.3333333333333333 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA 0.5 +hsa-miR-512-3p|0|1|23M|22C0|AAGTGCTGTCATAGCTGAGGTCT 0.3333333333333333 +hsa-miR-512-3p|0|1|23M|3T18C0|AAGAGCTGTCATAGCTGAGGTCT 1.0 +hsa-miR-512-5p|1|-1|21M|21|ACTCAGCCTTGAGGGCACTTT 2.0 +hsa-miR-512-5p|1|-2|20M|20|ACTCAGCCTTGAGGGCACTT 1.0 +hsa-miR-512-5p|1|0|22M|22|ACTCAGCCTTGAGGGCACTTTC 1.0 +hsa-miR-515-3p|0|-1|21M|21|GAGTGCCTTCTTTTGGAGCGT 1.0 +hsa-miR-516a-5p|0|-1|22M|22|TTCTCGAGGAAAGAAGCACTTT 6.0 +hsa-miR-516a-5p|1|-1|21M|21|TCTCGAGGAAAGAAGCACTTT 1.0 +hsa-miR-516b-5p|0|-3|19M|18C|ATCTGGAGGTAAGAAGCAA 0.6666666666666666 +hsa-miR-516b-5p|0|-3|19M|18C0|ATCTGGAGGTAAGAAGCAA 0.3333333333333333 +hsa-miR-516b-5p|0|0|22M|10A11|ATCTGGAGGTCAGAAGCACTTT 1.0 hsa-miR-516b-5p 3.0 -hsa-miR-517-5p|-1|0|23M|22T 0.6000000000000001 -hsa-miR-517-5p|-1|0|23M|22T0 0.4 -hsa-miR-517-5p|4|2|6M1D13M|0T5^G13 1.0 -hsa-miR-517-5p|4|2|6M1D13M|6^G9C3 3.0 -hsa-miR-517a-3p|0|-1|21M|21 1.3333333333333333 +hsa-miR-517-5p|-1|0|23M|22T|CCCTCTAGATGGAAGCACTGTCA 0.6000000000000001 +hsa-miR-517-5p|-1|0|23M|22T0|CCCTCTAGATGGAAGCACTGTCA 0.4 +hsa-miR-517-5p|4|2|6M1D13M|0T5^G13|GAGATGAAGCACTGTCTGT 1.0 +hsa-miR-517-5p|4|2|6M1D13M|6^G9C3|TAGATGAAGCACTGTATGT 3.0 +hsa-miR-517a-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG 1.3333333333333333 hsa-miR-517a-3p 2.6666666666666665 -hsa-miR-517b-3p|0|-1|21M|21 0.6666666666666666 +hsa-miR-517b-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG 0.6666666666666666 hsa-miR-517b-3p 1.3333333333333333 hsa-miR-518b 1.0 -hsa-miR-518c-5p|1|-1|21M|21 1.0 -hsa-miR-518c-5p|1|-2|20M|19C 1.0 -hsa-miR-518c-5p|1|0|22M|22 1.0 -hsa-miR-518d-5p|0|-1|21M|20T 0.2222222222222222 -hsa-miR-518d-5p|0|-1|21M|20T0 0.2222222222222222 -hsa-miR-518d-5p|0|-1|21M|21 0.6666666666666666 -hsa-miR-518d-5p|0|-1|21M|3T16T0 0.2 -hsa-miR-518d-5p|0|-2|20M|20 0.4444444444444444 -hsa-miR-518d-5p|0|-3|19M|19 0.2222222222222222 +hsa-miR-518c-5p|1|-1|21M|21|CTCTGGAGGGAAGCACTTTCT 1.0 +hsa-miR-518c-5p|1|-2|20M|19C|CTCTGGAGGGAAGCACTTTA 1.0 +hsa-miR-518c-5p|1|0|22M|22|CTCTGGAGGGAAGCACTTTCTG 1.0 +hsa-miR-518d-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 +hsa-miR-518d-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 +hsa-miR-518d-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.6666666666666666 +hsa-miR-518d-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 +hsa-miR-518d-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC 0.4444444444444444 +hsa-miR-518d-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT 0.2222222222222222 hsa-miR-518d-5p 0.2857142857142857 hsa-miR-518e-3p 1.0 -hsa-miR-518e-5p|0|-1|21M|19C0T0 0.16666666666666666 -hsa-miR-518e-5p|0|-1|21M|21 2.1818181818181817 -hsa-miR-518e-5p|0|-2|20M|19C 0.09090909090909091 -hsa-miR-518e-5p|0|-3|19M|19 0.09090909090909091 +hsa-miR-518e-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 +hsa-miR-518e-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 2.1818181818181817 +hsa-miR-518e-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-518e-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.09090909090909091 hsa-miR-518e-5p 0.36363636363636365 -hsa-miR-518e-5p|0|1|23M|23 0.2727272727272727 -hsa-miR-518f-5p|0|-1|21M|20T 0.2222222222222222 -hsa-miR-518f-5p|0|-1|21M|21 0.3333333333333333 -hsa-miR-518f-5p|0|-1|21M|3T16T0 0.2 -hsa-miR-518f-5p|0|-2|20M|20 0.2222222222222222 -hsa-miR-518f-5p|0|-3|19M|19 0.1111111111111111 +hsa-miR-518e-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.2727272727272727 +hsa-miR-518f-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 +hsa-miR-518f-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.3333333333333333 +hsa-miR-518f-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 +hsa-miR-518f-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC 0.2222222222222222 +hsa-miR-518f-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT 0.1111111111111111 hsa-miR-518f-5p 1.0 -hsa-miR-519a-3p|0|0|22M|3G18 1.0 -hsa-miR-519a-5p|-1|-1|22M|21T 1.0 -hsa-miR-519a-5p|-1|-1|22M|22 5.0 -hsa-miR-519a-5p|-1|-3|20M|20 1.0 -hsa-miR-519a-5p|0|-1|21M|19C0T0 0.16666666666666666 -hsa-miR-519a-5p|0|-1|21M|21 4.363636363636363 -hsa-miR-519a-5p|0|-2|20M|19C 0.09090909090909091 -hsa-miR-519a-5p|0|-2|20M|19C0 0.09090909090909091 -hsa-miR-519a-5p|0|-3|19M|19 0.18181818181818182 +hsa-miR-519a-3p|0|0|22M|3G18|AAATTGCATCCTTTTAGAGTGT 1.0 +hsa-miR-519a-5p|-1|-1|22M|21T|ACTCTAGAGGGAAGCGCTTTCA 1.0 +hsa-miR-519a-5p|-1|-1|22M|22|ACTCTAGAGGGAAGCGCTTTCT 5.0 +hsa-miR-519a-5p|-1|-3|20M|20|ACTCTAGAGGGAAGCGCTTT 1.0 +hsa-miR-519a-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 +hsa-miR-519a-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 +hsa-miR-519a-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-519a-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-519a-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 hsa-miR-519a-5p 0.7272727272727273 -hsa-miR-519a-5p|0|1|23M|23 0.5454545454545454 -hsa-miR-519b-5p|0|-1|21M|19C0T0 0.16666666666666666 -hsa-miR-519b-5p|0|-1|21M|21 4.363636363636363 -hsa-miR-519b-5p|0|-2|20M|19C 0.09090909090909091 -hsa-miR-519b-5p|0|-2|20M|19C0 0.09090909090909091 -hsa-miR-519b-5p|0|-3|19M|19 0.18181818181818182 +hsa-miR-519a-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 +hsa-miR-519b-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 +hsa-miR-519b-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 +hsa-miR-519b-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-519b-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-519b-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 hsa-miR-519b-5p 0.7272727272727273 -hsa-miR-519b-5p|0|1|23M|23 0.5454545454545454 -hsa-miR-519c-5p|0|-1|21M|19C0T0 0.16666666666666666 -hsa-miR-519c-5p|0|-1|21M|21 4.363636363636363 -hsa-miR-519c-5p|0|-2|20M|19C 0.09090909090909091 -hsa-miR-519c-5p|0|-2|20M|19C0 0.09090909090909091 -hsa-miR-519c-5p|0|-3|19M|19 0.18181818181818182 +hsa-miR-519b-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 +hsa-miR-519c-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 +hsa-miR-519c-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 +hsa-miR-519c-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-519c-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-519c-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 hsa-miR-519c-5p 0.7272727272727273 -hsa-miR-519c-5p|0|1|23M|23 0.5454545454545454 -hsa-miR-519d-3p|0|-1|21M|21 1.0 -hsa-miR-519d-3p|0|-2|20M|20 2.0 +hsa-miR-519c-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 +hsa-miR-519d-3p|0|-1|21M|21|CAAAGTGCCTCCCTTTAGAGT 1.0 +hsa-miR-519d-3p|0|-2|20M|20|CAAAGTGCCTCCCTTTAGAG 2.0 hsa-miR-520a-3p 4.0 -hsa-miR-520a-3p|0|0|22M|3G18 1.0 -hsa-miR-520a-3p|0|1|23M|22T 1.0 -hsa-miR-520a-5p|0|0|21M|19C0T0 1.0 -hsa-miR-520a-5p|0|0|21M|20T 1.0 +hsa-miR-520a-3p|0|0|22M|3G18|AAAGTGCTTCCCTTTGGACTGT 1.0 +hsa-miR-520a-3p|0|1|23M|22T|AAAGTGCTTCCCTTTGGACTGTA 1.0 +hsa-miR-520a-5p|0|0|21M|19C0T0|CTCCAGAGGGAAGTACTTTGA 1.0 +hsa-miR-520a-5p|0|0|21M|20T|CTCCAGAGGGAAGTACTTTCG 1.0 hsa-miR-520a-5p 2.0 -hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1 1.0 -hsa-miR-520a-5p|0|1|19M1I3M|19C0T1 1.0 -hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0 3.0 -hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0 2.0 -hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0 3.0 -hsa-miR-520a-5p|0|2|23M|19C0T1T0 1.0 -hsa-miR-520b-3p|-1|-1|21M|21 0.4 -hsa-miR-520b-3p|0|1|22M|22 0.6666666666666666 -hsa-miR-520c-3p|-1|-2|21M|21 0.4 +hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1|CTCCAGAGGGAAGTACTTTAG 1.0 +hsa-miR-520a-5p|0|1|19M1I3M|19C0T1|CTCCAGAGGGAAGTACTTTGAAG 1.0 +hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0|CTCCAGAGGGAAGTACTTTAGA 3.0 +hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0|CTCCAGAGGGAAGTACTTTTAA 2.0 +hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0|CTCCAGAGGGAAGTACTTTCGA 3.0 +hsa-miR-520a-5p|0|2|23M|19C0T1T0|CTCCAGAGGGAAGTACTTTAAGA 1.0 +hsa-miR-520b-3p|-1|-1|21M|21|GAAAGTGCTTCCTTTTAGAGG 0.4 +hsa-miR-520b-3p|0|1|22M|22|AAAGTGCTTCCTTTTAGAGGGT 0.6666666666666666 +hsa-miR-520c-3p|-1|-2|21M|21|GAAAGTGCTTCCTTTTAGAGG 0.4 hsa-miR-520c-3p 1.3333333333333333 -hsa-miR-520c-5p|0|-1|21M|20T 0.2222222222222222 -hsa-miR-520c-5p|0|-1|21M|20T0 0.2222222222222222 -hsa-miR-520c-5p|0|-1|21M|21 0.6666666666666666 -hsa-miR-520c-5p|0|-1|21M|3T16T0 0.2 -hsa-miR-520c-5p|0|-2|20M|20 0.4444444444444444 -hsa-miR-520c-5p|0|-3|19M|19 0.2222222222222222 +hsa-miR-520c-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 +hsa-miR-520c-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 +hsa-miR-520c-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.6666666666666666 +hsa-miR-520c-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 +hsa-miR-520c-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC 0.4444444444444444 +hsa-miR-520c-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT 0.2222222222222222 hsa-miR-520c-5p 0.2857142857142857 hsa-miR-520e-3p 1.0 -hsa-miR-520e-5p|3|-3|7M1I9M|2G13 1.0 -hsa-miR-520g-3p|1|-2|21M|21 0.3333333333333333 -hsa-miR-520g-3p|1|0|23M|23 1.0 -hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8 1.0 -hsa-miR-520h|1|0|21M|21 0.6666666666666666 -hsa-miR-522-3p|0|0|22M|1A20 1.0 -hsa-miR-522-5p|0|-1|21M|19C0T0 0.16666666666666666 -hsa-miR-522-5p|0|-1|21M|21 4.363636363636363 -hsa-miR-522-5p|0|-2|20M|19C 0.09090909090909091 -hsa-miR-522-5p|0|-2|20M|19C0 0.09090909090909091 -hsa-miR-522-5p|0|-3|19M|19 0.18181818181818182 +hsa-miR-520e-5p|3|-3|7M1I9M|2G13|AAAATGGGAAGCAGTTT 1.0 +hsa-miR-520g-3p|1|-2|21M|21|CAAAGTGCTTCCCTTTAGAGT 0.3333333333333333 +hsa-miR-520g-3p|1|0|23M|23|CAAAGTGCTTCCCTTTAGAGTGT 1.0 +hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8|CCCTCTAGAGGAGCCTGTTCTGT 1.0 +hsa-miR-520h|1|0|21M|21|CAAAGTGCTTCCCTTTAGAGT 0.6666666666666666 +hsa-miR-522-3p|0|0|22M|1A20|AGAATGGTTCCCTTTAGAGTGT 1.0 +hsa-miR-522-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 +hsa-miR-522-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 +hsa-miR-522-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-522-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-522-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 hsa-miR-522-5p 0.7272727272727273 -hsa-miR-522-5p|0|1|23M|23 0.5454545454545454 -hsa-miR-523-5p|0|-1|21M|19C0T0 0.16666666666666666 -hsa-miR-523-5p|0|-1|21M|21 4.363636363636363 -hsa-miR-523-5p|0|-2|20M|19C 0.09090909090909091 -hsa-miR-523-5p|0|-2|20M|19C0 0.09090909090909091 -hsa-miR-523-5p|0|-3|19M|19 0.18181818181818182 +hsa-miR-522-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 +hsa-miR-523-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 +hsa-miR-523-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 +hsa-miR-523-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-523-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-523-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 hsa-miR-523-5p 0.7272727272727273 -hsa-miR-523-5p|0|1|23M|23 0.5454545454545454 -hsa-miR-524-5p|0|-1|21M|21 1.0 -hsa-miR-524-5p|0|-2|20M|20 1.0 -hsa-miR-525-5p|0|-1|20M|20 5.0 +hsa-miR-523-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 +hsa-miR-524-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 1.0 +hsa-miR-524-5p|0|-2|20M|20|CTACAAAGGGAAGCACTTTC 1.0 +hsa-miR-525-5p|0|-1|20M|20|CTCCAGAGGGATGCACTTTC 5.0 hsa-miR-525-5p 3.0 -hsa-miR-526a-5p|0|-1|21M|20T 0.4444444444444444 -hsa-miR-526a-5p|0|-1|21M|20T0 0.4444444444444444 -hsa-miR-526a-5p|0|-1|21M|21 1.3333333333333333 -hsa-miR-526a-5p|0|-1|21M|3T16T0 0.4 -hsa-miR-526a-5p|0|-2|20M|20 0.8888888888888888 -hsa-miR-526a-5p|0|-3|19M|19 0.4444444444444444 +hsa-miR-526a-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.4444444444444444 +hsa-miR-526a-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.4444444444444444 +hsa-miR-526a-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 1.3333333333333333 +hsa-miR-526a-5p|0|-1|21M|3T16T0|CTCTAGAGGGAAGCACTTTCA 0.4 +hsa-miR-526a-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC 0.8888888888888888 +hsa-miR-526a-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT 0.4444444444444444 hsa-miR-526a-5p 0.42857142857142855 diff --git a/scripts/tests/files/iso_quantification b/scripts/tests/files/iso_quantification index 9e5cdd7..2906ac7 100644 --- a/scripts/tests/files/iso_quantification +++ b/scripts/tests/files/iso_quantification @@ -1,131 +1,134 @@ -hsa-miR-1323|0|-1|21M|21 1.0 -hsa-miR-371a-5p|0|3|23M|17A3T0C0 1.0 -hsa-miR-371b-3p|0|-1|22M|22 2.0 -hsa-miR-372-3p|0|-1|22M|0A0A2T17 1.0 -hsa-miR-372-3p|0|-1|22M|22 4.0 -hsa-miR-372-3p|0|-1|22M|3G18 3.0 -hsa-miR-372-3p|0|0|23M|1A20T0 1.0 -hsa-miR-372-3p|0|0|23M|22T 2.0 -hsa-miR-372-3p|0|0|23M|3G19 1.0 -hsa-miR-372-3p|1|0|21M1I1M|23 1.0 -hsa-miR-372-3p|1|0|22M|22 1.0 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+hsa-miR-520a-5p|0|0|21M|19C0T0|CTCCAGAGGGAAGTACTTTGA 1.0 +hsa-miR-520a-5p|0|0|21M|20T|CTCCAGAGGGAAGTACTTTCG 1.0 +hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1|CTCCAGAGGGAAGTACTTTAG 1.0 +hsa-miR-520a-5p|0|1|19M1I3M|19C0T1|CTCCAGAGGGAAGTACTTTGAAG 1.0 +hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0|CTCCAGAGGGAAGTACTTTAGA 3.0 +hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0|CTCCAGAGGGAAGTACTTTTAA 2.0 +hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0|CTCCAGAGGGAAGTACTTTCGA 3.0 +hsa-miR-520a-5p|0|2|23M|19C0T1T0|CTCCAGAGGGAAGTACTTTAAGA 1.0 +hsa-miR-520b-3p|-1|-1|21M|21|GAAAGTGCTTCCTTTTAGAGG 0.4 +hsa-miR-520b-3p|0|1|22M|22|AAAGTGCTTCCTTTTAGAGGGT 0.6666666666666666 +hsa-miR-520c-3p|-1|-2|21M|21|GAAAGTGCTTCCTTTTAGAGG 0.4 +hsa-miR-520c-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 +hsa-miR-520c-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 +hsa-miR-520c-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.6666666666666666 +hsa-miR-520c-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 +hsa-miR-520c-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC 0.4444444444444444 +hsa-miR-520c-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT 0.2222222222222222 +hsa-miR-520e-5p|3|-3|7M1I9M|2G13|AAAATGGGAAGCAGTTT 1.0 +hsa-miR-520g-3p|1|-2|21M|21|CAAAGTGCTTCCCTTTAGAGT 0.3333333333333333 +hsa-miR-520g-3p|1|0|23M|23|CAAAGTGCTTCCCTTTAGAGTGT 1.0 +hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8|CCCTCTAGAGGAGCCTGTTCTGT 1.0 +hsa-miR-520h|1|0|21M|21|CAAAGTGCTTCCCTTTAGAGT 0.6666666666666666 +hsa-miR-522-3p|0|0|22M|1A20|AGAATGGTTCCCTTTAGAGTGT 1.0 +hsa-miR-522-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 +hsa-miR-522-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 +hsa-miR-522-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-522-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-522-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 +hsa-miR-522-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 +hsa-miR-523-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 +hsa-miR-523-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 +hsa-miR-523-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-523-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-523-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 +hsa-miR-523-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 +hsa-miR-524-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 1.0 +hsa-miR-524-5p|0|-2|20M|20|CTACAAAGGGAAGCACTTTC 1.0 +hsa-miR-525-5p|0|-1|20M|20|CTCCAGAGGGATGCACTTTC 5.0 +hsa-miR-526a-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.4444444444444444 +hsa-miR-526a-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.4444444444444444 +hsa-miR-526a-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 1.3333333333333333 +hsa-miR-526a-5p|0|-1|21M|3T16T0|CTCTAGAGGGAAGCACTTTCA 0.4 +hsa-miR-526a-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC 0.8888888888888888 +hsa-miR-526a-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT 0.4444444444444444 diff --git a/scripts/tests/files/len_ids_iso_mirna_quantification b/scripts/tests/files/len_ids_iso_mirna_quantification index 7bc2995..2080601 100644 --- a/scripts/tests/files/len_ids_iso_mirna_quantification +++ b/scripts/tests/files/len_ids_iso_mirna_quantification @@ -1,157 +1,160 @@ -hsa-miR-1323|0|-1|21M|21 1.0 22 709268-1_1 +hsa-miR-1323|0|-1|21M|21|TCAAAACTGAGGGGCATTTTC 1.0 22 709268-1_1 hsa-miR-1323 1.0 20 528546-1_1 hsa-miR-371a-5p 1.0 23 270342-1_1 -hsa-miR-371a-5p|0|3|23M|17A3T0C0 1.0 22 840419-1_1 -hsa-miR-371b-3p|0|-1|22M|22 2.0 22 120522-2_1 -hsa-miR-372-3p|0|-1|22M|0A0A2T17 1.0 22 299969-1_1 -hsa-miR-372-3p|0|-1|22M|22 4.0 22 67825-4_1 -hsa-miR-372-3p|0|-1|22M|3G18 3.0 23 90583-3_1 -hsa-miR-372-3p|0|0|23M|1A20T0 1.0 23 629861-1_1 -hsa-miR-372-3p|0|0|23M|22T 2.0 23 120521-2_1 +hsa-miR-371a-5p|0|3|23M|17A3T0C0|ACTCAAACTGTGGGGGCACTTAG 1.0 22 840419-1_1 +hsa-miR-371b-3p|0|-1|22M|22|GCACTCAAACTGTGGGGGCACT 2.0 22 120522-2_1 +hsa-miR-372-3p|0|-1|22M|0A0A2T17|CGAGCGCTGCGACATTTGAGCG 1.0 22 299969-1_1 +hsa-miR-372-3p|0|-1|22M|22|AAAGTGCTGCGACATTTGAGCG 4.0 22 67825-4_1 +hsa-miR-372-3p|0|-1|22M|3G18|AAATTGCTGCGACATTTGAGCG 3.0 23 90583-3_1 +hsa-miR-372-3p|0|0|23M|1A20T0|AGAGTGCTGCGACATTTGAGCGA 1.0 23 629861-1_1 +hsa-miR-372-3p|0|0|23M|22T|AAAGTGCTGCGACATTTGAGCGA 2.0 23 120521-2_1 hsa-miR-372-3p 1.0 23 739110-1_1 -hsa-miR-372-3p|0|0|23M|3G19 1.0 23 270338-1_1 -hsa-miR-372-3p|1|0|21M1I1M|23 1.0 22 267649-1_1 -hsa-miR-372-3p|1|0|22M|22 1.0 23 313132-1_1 -hsa-miR-372-3p|1|0|4M1I18M|2G19 1.0 23 270337-1_1 +hsa-miR-372-3p|0|0|23M|3G19|AAATTGCTGCGACATTTGAGCGT 1.0 23 270338-1_1 +hsa-miR-372-3p|1|0|21M1I1M|23|AAGTGCTGCGACATTTGAGCGAT 1.0 22 267649-1_1 +hsa-miR-372-3p|1|0|22M|22|AAGTGCTGCGACATTTGAGCGT 1.0 23 313132-1_1 +hsa-miR-372-3p|1|0|4M1I18M|2G19|AACTTGCTGCGACATTTGAGCGT 1.0 23 270337-1_1 hsa-miR-373-3p 2.0 23 188149-2_1 hsa-miR-498-5p 1.0 21 270393-1_1 -hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4 1.0 21 610105-1_2;610105-1_2 -hsa-miR-512-3p|0|-1|21M|20T 0.6666666666666666 21 645839-1_3;645839-1_3 -hsa-miR-512-3p|0|-1|21M|20T0 0.3333333333333333 21 645839-1_3 -hsa-miR-512-3p|0|-1|21M|21 4.0 21 67830-4_3;67830-4_3;67830-4_3 -hsa-miR-512-3p|0|-1|21M|7G13 1.0 20 535182-1_3;535182-1_3;535182-1_3 -hsa-miR-512-3p|0|-2|20M|12A7 1.0 20 766380-1_3;766380-1_3;766380-1_3 -hsa-miR-512-3p|0|-2|20M|20 4.0 22 67831-4_3;67831-4_3;67831-4_3 -hsa-miR-512-3p|0|0|22M|12A9 1.0 22 270395-1_3;270395-1_3;270395-1_3 -hsa-miR-512-3p|0|0|22M|17A4 1.0 22 773136-1_3;773136-1_3;773136-1_3 -hsa-miR-512-3p|0|0|22M|21C 2.0 22 102065-3_3;102065-3_3 -hsa-miR-512-3p|0|0|22M|21C0 1.0 22 102065-3_3 +hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4|GAACAGTGCTGTGATAACTGA 1.0 21 610105-1_2;610105-1_2 +hsa-miR-512-3p|0|-1|21M|20T|AAGTGCTGTCATAGCTGAGGA 0.6666666666666666 21 645839-1_3;645839-1_3 +hsa-miR-512-3p|0|-1|21M|20T0|AAGTGCTGTCATAGCTGAGGA 0.3333333333333333 21 645839-1_3 +hsa-miR-512-3p|0|-1|21M|21|AAGTGCTGTCATAGCTGAGGT 4.0 21 67830-4_3;67830-4_3;67830-4_3 +hsa-miR-512-3p|0|-1|21M|7G13|AAGTGCTTTCATAGCTGAGGT 1.0 20 535182-1_3;535182-1_3;535182-1_3 +hsa-miR-512-3p|0|-2|20M|12A7|AAGTGCTGTCATCGCTGAGG 1.0 20 766380-1_3;766380-1_3;766380-1_3 +hsa-miR-512-3p|0|-2|20M|20|AAGTGCTGTCATAGCTGAGG 4.0 22 67831-4_3;67831-4_3;67831-4_3 +hsa-miR-512-3p|0|0|22M|12A9|AAGTGCTGTCATCGCTGAGGTC 1.0 22 270395-1_3;270395-1_3;270395-1_3 +hsa-miR-512-3p|0|0|22M|17A4|AAGTGCTGTCATAGCTGCGGTC 1.0 22 773136-1_3;773136-1_3;773136-1_3 +hsa-miR-512-3p|0|0|22M|21C|AAGTGCTGTCATAGCTGCGGTT 2.0 22 102065-3_3;102065-3_3 +hsa-miR-512-3p|0|0|22M|21C0|AAGTGCTGTCATAGCTGCGGTT 1.0 22 102065-3_3 hsa-miR-512-3p 9.0 23 37896-9_3;37896-9_3;37896-9_3 -hsa-miR-512-3p|0|1|23M|21C0C0 1.0 23 334943-1_2;334943-1_2 -hsa-miR-512-3p|0|1|23M|22C 1.6666666666666665 23 270396-1_3;270401-1_2;270396-1_3;270401-1_2 -hsa-miR-512-3p|0|1|23M|22C0 0.3333333333333333 23 270396-1_3 -hsa-miR-512-3p|0|1|23M|3T18C0 1.0 21 673650-1_2;673650-1_2 -hsa-miR-512-5p|1|-1|21M|21 2.0 20 150819-2_3;150819-2_3;150819-2_3 -hsa-miR-512-5p|1|-2|20M|20 1.0 22 270402-1_3;270402-1_3;270402-1_3 -hsa-miR-512-5p|1|0|22M|22 1.0 21 752875-1_3;752875-1_3;752875-1_3 -hsa-miR-515-3p|0|-1|21M|21 1.0 22 369314-1_3;369314-1_3;369314-1_3 -hsa-miR-516a-5p|0|-1|22M|22 6.0 21 54840-6_3;54840-6_3;54840-6_3 -hsa-miR-516a-5p|1|-1|21M|21 1.0 19 423555-1_3;423555-1_3;423555-1_3 -hsa-miR-516b-5p|0|-3|19M|18C 0.6666666666666666 19 270365-1_3;270365-1_3 -hsa-miR-516b-5p|0|-3|19M|18C0 0.3333333333333333 22 270365-1_3 -hsa-miR-516b-5p|0|0|22M|10A11 1.0 22 270366-1_3;270366-1_3;270366-1_3 +hsa-miR-512-3p|0|1|23M|21C0C0|AAGTGCTGTCATAGCTGAGGTAG 1.0 23 334943-1_2;334943-1_2 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT 0.3333333333333333 23 270396-1_3 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA 0.5 23 270401-1_2 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT 0.3333333333333333 23 270396-1_3 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA 0.5 23 270401-1_2 +hsa-miR-512-3p|0|1|23M|22C0|AAGTGCTGTCATAGCTGAGGTCT 0.3333333333333333 23 270396-1_3 +hsa-miR-512-3p|0|1|23M|3T18C0|AAGAGCTGTCATAGCTGAGGTCT 1.0 21 673650-1_2;673650-1_2 +hsa-miR-512-5p|1|-1|21M|21|ACTCAGCCTTGAGGGCACTTT 2.0 20 150819-2_3;150819-2_3;150819-2_3 +hsa-miR-512-5p|1|-2|20M|20|ACTCAGCCTTGAGGGCACTT 1.0 22 270402-1_3;270402-1_3;270402-1_3 +hsa-miR-512-5p|1|0|22M|22|ACTCAGCCTTGAGGGCACTTTC 1.0 21 752875-1_3;752875-1_3;752875-1_3 +hsa-miR-515-3p|0|-1|21M|21|GAGTGCCTTCTTTTGGAGCGT 1.0 22 369314-1_3;369314-1_3;369314-1_3 +hsa-miR-516a-5p|0|-1|22M|22|TTCTCGAGGAAAGAAGCACTTT 6.0 21 54840-6_3;54840-6_3;54840-6_3 +hsa-miR-516a-5p|1|-1|21M|21|TCTCGAGGAAAGAAGCACTTT 1.0 19 423555-1_3;423555-1_3;423555-1_3 +hsa-miR-516b-5p|0|-3|19M|18C|ATCTGGAGGTAAGAAGCAA 0.6666666666666666 19 270365-1_3;270365-1_3 +hsa-miR-516b-5p|0|-3|19M|18C0|ATCTGGAGGTAAGAAGCAA 0.3333333333333333 22 270365-1_3 +hsa-miR-516b-5p|0|0|22M|10A11|ATCTGGAGGTCAGAAGCACTTT 1.0 22 270366-1_3;270366-1_3;270366-1_3 hsa-miR-516b-5p 3.0 23 86082-3_3;86082-3_3;86082-3_3 -hsa-miR-517-5p|-1|0|23M|22T 0.6000000000000001 23 270359-1_5;270359-1_5;270359-1_5 -hsa-miR-517-5p|-1|0|23M|22T0 0.4 19 270359-1_5;270359-1_5 -hsa-miR-517-5p|4|2|6M1D13M|0T5^G13 1.0 19 752904-1_3;752904-1_3;752904-1_3 -hsa-miR-517-5p|4|2|6M1D13M|6^G9C3 3.0 21 105051-3_3;105051-3_3;105051-3_3 -hsa-miR-517a-3p|0|-1|21M|21 1.3333333333333333 22 120530-2_3;120530-2_3 +hsa-miR-517-5p|-1|0|23M|22T|CCCTCTAGATGGAAGCACTGTCA 0.6000000000000001 23 270359-1_5;270359-1_5;270359-1_5 +hsa-miR-517-5p|-1|0|23M|22T0|CCCTCTAGATGGAAGCACTGTCA 0.4 19 270359-1_5;270359-1_5 +hsa-miR-517-5p|4|2|6M1D13M|0T5^G13|GAGATGAAGCACTGTCTGT 1.0 19 752904-1_3;752904-1_3;752904-1_3 +hsa-miR-517-5p|4|2|6M1D13M|6^G9C3|TAGATGAAGCACTGTATGT 3.0 21 105051-3_3;105051-3_3;105051-3_3 +hsa-miR-517a-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG 1.3333333333333333 22 120530-2_3;120530-2_3 hsa-miR-517a-3p 2.6666666666666665 21 67957-4_3;67957-4_3 -hsa-miR-517b-3p|0|-1|21M|21 0.6666666666666666 22 120530-2_3 +hsa-miR-517b-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG 0.6666666666666666 22 120530-2_3 hsa-miR-517b-3p 1.3333333333333333 22 67957-4_3 hsa-miR-518b 1.0 21 447402-1_1 -hsa-miR-518c-5p|1|-1|21M|21 1.0 20 270377-1_1 -hsa-miR-518c-5p|1|-2|20M|19C 1.0 22 751085-1_1 -hsa-miR-518c-5p|1|0|22M|22 1.0 21 270378-1_1 -hsa-miR-518d-5p|0|-1|21M|20T 0.2222222222222222 21 120527-2_9 -hsa-miR-518d-5p|0|-1|21M|20T0 0.2222222222222222 21 120527-2_9 -hsa-miR-518d-5p|0|-1|21M|21 0.6666666666666666 21 95680-3_9;95680-3_9 -hsa-miR-518d-5p|0|-1|21M|3T16T0 0.2 20 270379-1_5 -hsa-miR-518d-5p|0|-2|20M|20 0.4444444444444444 19 139675-2_9;139675-2_9 -hsa-miR-518d-5p|0|-3|19M|19 0.2222222222222222 22 531738-1_9;531738-1_9 +hsa-miR-518c-5p|1|-1|21M|21|CTCTGGAGGGAAGCACTTTCT 1.0 20 270377-1_1 +hsa-miR-518c-5p|1|-2|20M|19C|CTCTGGAGGGAAGCACTTTA 1.0 22 751085-1_1 +hsa-miR-518c-5p|1|0|22M|22|CTCTGGAGGGAAGCACTTTCTG 1.0 21 270378-1_1 +hsa-miR-518d-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 21 120527-2_9 +hsa-miR-518d-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 21 120527-2_9 +hsa-miR-518d-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.6666666666666666 21 95680-3_9;95680-3_9 +hsa-miR-518d-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 20 270379-1_5 +hsa-miR-518d-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC 0.4444444444444444 19 139675-2_9;139675-2_9 +hsa-miR-518d-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT 0.2222222222222222 22 531738-1_9;531738-1_9 hsa-miR-518d-5p 0.2857142857142857 21 270381-1_7;270381-1_7 hsa-miR-518e-3p 1.0 21 270360-1_1 -hsa-miR-518e-5p|0|-1|21M|19C0T0 0.16666666666666666 21 676180-1_6 -hsa-miR-518e-5p|0|-1|21M|21 2.1818181818181817 20 18915-24_11 -hsa-miR-518e-5p|0|-2|20M|19C 0.09090909090909091 19 270361-1_11 -hsa-miR-518e-5p|0|-3|19M|19 0.09090909090909091 22 630277-1_11 +hsa-miR-518e-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 21 676180-1_6 +hsa-miR-518e-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 2.1818181818181817 20 18915-24_11 +hsa-miR-518e-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 19 270361-1_11 +hsa-miR-518e-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.09090909090909091 22 630277-1_11 hsa-miR-518e-5p 0.36363636363636365 23 67687-4_11 -hsa-miR-518e-5p|0|1|23M|23 0.2727272727272727 21 84523-3_11 -hsa-miR-518f-5p|0|-1|21M|20T 0.2222222222222222 21 120527-2_9 -hsa-miR-518f-5p|0|-1|21M|21 0.3333333333333333 21 95680-3_9 -hsa-miR-518f-5p|0|-1|21M|3T16T0 0.2 20 270379-1_5 -hsa-miR-518f-5p|0|-2|20M|20 0.2222222222222222 19 139675-2_9 -hsa-miR-518f-5p|0|-3|19M|19 0.1111111111111111 22 531738-1_9 +hsa-miR-518e-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.2727272727272727 21 84523-3_11 +hsa-miR-518f-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 21 120527-2_9 +hsa-miR-518f-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.3333333333333333 21 95680-3_9 +hsa-miR-518f-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 20 270379-1_5 +hsa-miR-518f-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC 0.2222222222222222 19 139675-2_9 +hsa-miR-518f-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT 0.1111111111111111 22 531738-1_9 hsa-miR-518f-5p 1.0 22 347693-1_1 -hsa-miR-519a-3p|0|0|22M|3G18 1.0 22 270348-1_3;270348-1_3;270348-1_3 -hsa-miR-519a-5p|-1|-1|22M|21T 1.0 22 270357-1_1 -hsa-miR-519a-5p|-1|-1|22M|22 5.0 20 58870-5_1 -hsa-miR-519a-5p|-1|-3|20M|20 1.0 21 270354-1_1 -hsa-miR-519a-5p|0|-1|21M|19C0T0 0.16666666666666666 21 676180-1_6 -hsa-miR-519a-5p|0|-1|21M|21 4.363636363636363 20 18915-24_11;18915-24_11 -hsa-miR-519a-5p|0|-2|20M|19C 0.09090909090909091 20 270361-1_11 -hsa-miR-519a-5p|0|-2|20M|19C0 0.09090909090909091 19 270361-1_11 -hsa-miR-519a-5p|0|-3|19M|19 0.18181818181818182 22 630277-1_11;630277-1_11 +hsa-miR-519a-3p|0|0|22M|3G18|AAATTGCATCCTTTTAGAGTGT 1.0 22 270348-1_3;270348-1_3;270348-1_3 +hsa-miR-519a-5p|-1|-1|22M|21T|ACTCTAGAGGGAAGCGCTTTCA 1.0 22 270357-1_1 +hsa-miR-519a-5p|-1|-1|22M|22|ACTCTAGAGGGAAGCGCTTTCT 5.0 20 58870-5_1 +hsa-miR-519a-5p|-1|-3|20M|20|ACTCTAGAGGGAAGCGCTTT 1.0 21 270354-1_1 +hsa-miR-519a-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 21 676180-1_6 +hsa-miR-519a-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 20 18915-24_11;18915-24_11 +hsa-miR-519a-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 20 270361-1_11 +hsa-miR-519a-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 19 270361-1_11 +hsa-miR-519a-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 22 630277-1_11;630277-1_11 hsa-miR-519a-5p 0.7272727272727273 23 67687-4_11;67687-4_11 -hsa-miR-519a-5p|0|1|23M|23 0.5454545454545454 21 84523-3_11;84523-3_11 -hsa-miR-519b-5p|0|-1|21M|19C0T0 0.16666666666666666 21 676180-1_6 -hsa-miR-519b-5p|0|-1|21M|21 4.363636363636363 20 18915-24_11;18915-24_11 -hsa-miR-519b-5p|0|-2|20M|19C 0.09090909090909091 20 270361-1_11 -hsa-miR-519b-5p|0|-2|20M|19C0 0.09090909090909091 19 270361-1_11 -hsa-miR-519b-5p|0|-3|19M|19 0.18181818181818182 22 630277-1_11;630277-1_11 +hsa-miR-519a-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 21 84523-3_11;84523-3_11 +hsa-miR-519b-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 21 676180-1_6 +hsa-miR-519b-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 20 18915-24_11;18915-24_11 +hsa-miR-519b-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 20 270361-1_11 +hsa-miR-519b-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 19 270361-1_11 +hsa-miR-519b-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 22 630277-1_11;630277-1_11 hsa-miR-519b-5p 0.7272727272727273 23 67687-4_11;67687-4_11 -hsa-miR-519b-5p|0|1|23M|23 0.5454545454545454 21 84523-3_11;84523-3_11 -hsa-miR-519c-5p|0|-1|21M|19C0T0 0.16666666666666666 21 676180-1_6 -hsa-miR-519c-5p|0|-1|21M|21 4.363636363636363 20 18915-24_11;18915-24_11 -hsa-miR-519c-5p|0|-2|20M|19C 0.09090909090909091 20 270361-1_11 -hsa-miR-519c-5p|0|-2|20M|19C0 0.09090909090909091 19 270361-1_11 -hsa-miR-519c-5p|0|-3|19M|19 0.18181818181818182 22 630277-1_11;630277-1_11 +hsa-miR-519b-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 21 84523-3_11;84523-3_11 +hsa-miR-519c-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 21 676180-1_6 +hsa-miR-519c-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 20 18915-24_11;18915-24_11 +hsa-miR-519c-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 20 270361-1_11 +hsa-miR-519c-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 19 270361-1_11 +hsa-miR-519c-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 22 630277-1_11;630277-1_11 hsa-miR-519c-5p 0.7272727272727273 23 67687-4_11;67687-4_11 -hsa-miR-519c-5p|0|1|23M|23 0.5454545454545454 21 84523-3_11;84523-3_11 -hsa-miR-519d-3p|0|-1|21M|21 1.0 20 270371-1_1 -hsa-miR-519d-3p|0|-2|20M|20 2.0 22 153079-2_1 +hsa-miR-519c-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 21 84523-3_11;84523-3_11 +hsa-miR-519d-3p|0|-1|21M|21|CAAAGTGCCTCCCTTTAGAGT 1.0 20 270371-1_1 +hsa-miR-519d-3p|0|-2|20M|20|CAAAGTGCCTCCCTTTAGAG 2.0 22 153079-2_1 hsa-miR-520a-3p 4.0 22 67829-4_1 -hsa-miR-520a-3p|0|0|22M|3G18 1.0 23 655140-1_1 -hsa-miR-520a-3p|0|1|23M|22T 1.0 21 485300-1_1 -hsa-miR-520a-5p|0|0|21M|19C0T0 1.0 21 729311-1_1 -hsa-miR-520a-5p|0|0|21M|20T 1.0 21 720817-1_1 +hsa-miR-520a-3p|0|0|22M|3G18|AAAGTGCTTCCCTTTGGACTGT 1.0 23 655140-1_1 +hsa-miR-520a-3p|0|1|23M|22T|AAAGTGCTTCCCTTTGGACTGTA 1.0 21 485300-1_1 +hsa-miR-520a-5p|0|0|21M|19C0T0|CTCCAGAGGGAAGTACTTTGA 1.0 21 729311-1_1 +hsa-miR-520a-5p|0|0|21M|20T|CTCCAGAGGGAAGTACTTTCG 1.0 21 720817-1_1 hsa-miR-520a-5p 2.0 21 120535-2_1 -hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1 1.0 23 228043-1_1 -hsa-miR-520a-5p|0|1|19M1I3M|19C0T1 1.0 22 609803-1_1 -hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0 3.0 22 101076-3_1 -hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0 2.0 22 127441-2_1 -hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0 3.0 23 103161-3_1 -hsa-miR-520a-5p|0|2|23M|19C0T1T0 1.0 21 478794-1_1 -hsa-miR-520b-3p|-1|-1|21M|21 0.4 22 744127-1_5;744127-1_5 -hsa-miR-520b-3p|0|1|22M|22 0.6666666666666666 21 120532-2_3 -hsa-miR-520c-3p|-1|-2|21M|21 0.4 22 744127-1_5;744127-1_5 +hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1|CTCCAGAGGGAAGTACTTTAG 1.0 23 228043-1_1 +hsa-miR-520a-5p|0|1|19M1I3M|19C0T1|CTCCAGAGGGAAGTACTTTGAAG 1.0 22 609803-1_1 +hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0|CTCCAGAGGGAAGTACTTTAGA 3.0 22 101076-3_1 +hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0|CTCCAGAGGGAAGTACTTTTAA 2.0 22 127441-2_1 +hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0|CTCCAGAGGGAAGTACTTTCGA 3.0 23 103161-3_1 +hsa-miR-520a-5p|0|2|23M|19C0T1T0|CTCCAGAGGGAAGTACTTTAAGA 1.0 21 478794-1_1 +hsa-miR-520b-3p|-1|-1|21M|21|GAAAGTGCTTCCTTTTAGAGG 0.4 22 744127-1_5;744127-1_5 +hsa-miR-520b-3p|0|1|22M|22|AAAGTGCTTCCTTTTAGAGGGT 0.6666666666666666 21 120532-2_3 +hsa-miR-520c-3p|-1|-2|21M|21|GAAAGTGCTTCCTTTTAGAGG 0.4 22 744127-1_5;744127-1_5 hsa-miR-520c-3p 1.3333333333333333 21 120532-2_3;120532-2_3 -hsa-miR-520c-5p|0|-1|21M|20T 0.2222222222222222 21 120527-2_9 -hsa-miR-520c-5p|0|-1|21M|20T0 0.2222222222222222 21 120527-2_9 -hsa-miR-520c-5p|0|-1|21M|21 0.6666666666666666 21 95680-3_9;95680-3_9 -hsa-miR-520c-5p|0|-1|21M|3T16T0 0.2 20 270379-1_5 -hsa-miR-520c-5p|0|-2|20M|20 0.4444444444444444 19 139675-2_9;139675-2_9 -hsa-miR-520c-5p|0|-3|19M|19 0.2222222222222222 22 531738-1_9;531738-1_9 +hsa-miR-520c-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 21 120527-2_9 +hsa-miR-520c-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 21 120527-2_9 +hsa-miR-520c-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.6666666666666666 21 95680-3_9;95680-3_9 +hsa-miR-520c-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 20 270379-1_5 +hsa-miR-520c-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC 0.4444444444444444 19 139675-2_9;139675-2_9 +hsa-miR-520c-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT 0.2222222222222222 22 531738-1_9;531738-1_9 hsa-miR-520c-5p 0.2857142857142857 21 270381-1_7;270381-1_7 hsa-miR-520e-3p 1.0 17 361022-1_1 -hsa-miR-520e-5p|3|-3|7M1I9M|2G13 1.0 21 772976-1_1 -hsa-miR-520g-3p|1|-2|21M|21 0.3333333333333333 23 270368-1_3 -hsa-miR-520g-3p|1|0|23M|23 1.0 23 270369-1_1 -hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8 1.0 21 138559-2_2 -hsa-miR-520h|1|0|21M|21 0.6666666666666666 22 270368-1_3;270368-1_3 -hsa-miR-522-3p|0|0|22M|1A20 1.0 21 270358-1_1 -hsa-miR-522-5p|0|-1|21M|19C0T0 0.16666666666666666 21 676180-1_6 -hsa-miR-522-5p|0|-1|21M|21 4.363636363636363 20 18915-24_11;18915-24_11 -hsa-miR-522-5p|0|-2|20M|19C 0.09090909090909091 20 270361-1_11 -hsa-miR-522-5p|0|-2|20M|19C0 0.09090909090909091 19 270361-1_11 -hsa-miR-522-5p|0|-3|19M|19 0.18181818181818182 22 630277-1_11;630277-1_11 +hsa-miR-520e-5p|3|-3|7M1I9M|2G13|AAAATGGGAAGCAGTTT 1.0 21 772976-1_1 +hsa-miR-520g-3p|1|-2|21M|21|CAAAGTGCTTCCCTTTAGAGT 0.3333333333333333 23 270368-1_3 +hsa-miR-520g-3p|1|0|23M|23|CAAAGTGCTTCCCTTTAGAGTGT 1.0 23 270369-1_1 +hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8|CCCTCTAGAGGAGCCTGTTCTGT 1.0 21 138559-2_2 +hsa-miR-520h|1|0|21M|21|CAAAGTGCTTCCCTTTAGAGT 0.6666666666666666 22 270368-1_3;270368-1_3 +hsa-miR-522-3p|0|0|22M|1A20|AGAATGGTTCCCTTTAGAGTGT 1.0 21 270358-1_1 +hsa-miR-522-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 21 676180-1_6 +hsa-miR-522-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 20 18915-24_11;18915-24_11 +hsa-miR-522-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 20 270361-1_11 +hsa-miR-522-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 19 270361-1_11 +hsa-miR-522-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 22 630277-1_11;630277-1_11 hsa-miR-522-5p 0.7272727272727273 23 67687-4_11;67687-4_11 -hsa-miR-522-5p|0|1|23M|23 0.5454545454545454 21 84523-3_11;84523-3_11 -hsa-miR-523-5p|0|-1|21M|19C0T0 0.16666666666666666 21 676180-1_6 -hsa-miR-523-5p|0|-1|21M|21 4.363636363636363 20 18915-24_11;18915-24_11 -hsa-miR-523-5p|0|-2|20M|19C 0.09090909090909091 20 270361-1_11 -hsa-miR-523-5p|0|-2|20M|19C0 0.09090909090909091 19 270361-1_11 -hsa-miR-523-5p|0|-3|19M|19 0.18181818181818182 22 630277-1_11;630277-1_11 +hsa-miR-522-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 21 84523-3_11;84523-3_11 +hsa-miR-523-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 21 676180-1_6 +hsa-miR-523-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 20 18915-24_11;18915-24_11 +hsa-miR-523-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 20 270361-1_11 +hsa-miR-523-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 19 270361-1_11 +hsa-miR-523-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 22 630277-1_11;630277-1_11 hsa-miR-523-5p 0.7272727272727273 23 67687-4_11;67687-4_11 -hsa-miR-523-5p|0|1|23M|23 0.5454545454545454 21 84523-3_11;84523-3_11 -hsa-miR-524-5p|0|-1|21M|21 1.0 20 270375-1_1 -hsa-miR-524-5p|0|-2|20M|20 1.0 20 270376-1_1 -hsa-miR-525-5p|0|-1|20M|20 5.0 21 57516-5_1 +hsa-miR-523-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 21 84523-3_11;84523-3_11 +hsa-miR-524-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 1.0 20 270375-1_1 +hsa-miR-524-5p|0|-2|20M|20|CTACAAAGGGAAGCACTTTC 1.0 20 270376-1_1 +hsa-miR-525-5p|0|-1|20M|20|CTCCAGAGGGATGCACTTTC 5.0 21 57516-5_1 hsa-miR-525-5p 3.0 21 102026-3_1 -hsa-miR-526a-5p|0|-1|21M|20T 0.4444444444444444 21 120527-2_9;120527-2_9 -hsa-miR-526a-5p|0|-1|21M|20T0 0.4444444444444444 21 120527-2_9;120527-2_9 -hsa-miR-526a-5p|0|-1|21M|21 1.3333333333333333 21 95680-3_9;95680-3_9;95680-3_9;95680-3_9 -hsa-miR-526a-5p|0|-1|21M|3T16T0 0.4 20 270379-1_5;270379-1_5 -hsa-miR-526a-5p|0|-2|20M|20 0.8888888888888888 19 139675-2_9;139675-2_9;139675-2_9;139675-2_9 -hsa-miR-526a-5p|0|-3|19M|19 0.4444444444444444 22 531738-1_9;531738-1_9;531738-1_9;531738-1_9 +hsa-miR-526a-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.4444444444444444 21 120527-2_9;120527-2_9 +hsa-miR-526a-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.4444444444444444 21 120527-2_9;120527-2_9 +hsa-miR-526a-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 1.3333333333333333 21 95680-3_9;95680-3_9;95680-3_9;95680-3_9 +hsa-miR-526a-5p|0|-1|21M|3T16T0|CTCTAGAGGGAAGCACTTTCA 0.4 20 270379-1_5;270379-1_5 +hsa-miR-526a-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC 0.8888888888888888 19 139675-2_9;139675-2_9;139675-2_9;139675-2_9 +hsa-miR-526a-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT 0.4444444444444444 22 531738-1_9;531738-1_9;531738-1_9;531738-1_9 hsa-miR-526a-5p 0.42857142857142855 22 270381-1_7;270381-1_7;270381-1_7 diff --git a/scripts/tests/files/len_iso_mirna_quantification b/scripts/tests/files/len_iso_mirna_quantification index 42c7d17..53afa18 100644 --- a/scripts/tests/files/len_iso_mirna_quantification +++ b/scripts/tests/files/len_iso_mirna_quantification @@ -1,157 +1,160 @@ -hsa-miR-1323|0|-1|21M|21 1.0 22 +hsa-miR-1323|0|-1|21M|21|TCAAAACTGAGGGGCATTTTC 1.0 22 hsa-miR-1323 1.0 20 hsa-miR-371a-5p 1.0 23 -hsa-miR-371a-5p|0|3|23M|17A3T0C0 1.0 22 -hsa-miR-371b-3p|0|-1|22M|22 2.0 22 -hsa-miR-372-3p|0|-1|22M|0A0A2T17 1.0 22 -hsa-miR-372-3p|0|-1|22M|22 4.0 22 -hsa-miR-372-3p|0|-1|22M|3G18 3.0 23 -hsa-miR-372-3p|0|0|23M|1A20T0 1.0 23 -hsa-miR-372-3p|0|0|23M|22T 2.0 23 +hsa-miR-371a-5p|0|3|23M|17A3T0C0|ACTCAAACTGTGGGGGCACTTAG 1.0 22 +hsa-miR-371b-3p|0|-1|22M|22|GCACTCAAACTGTGGGGGCACT 2.0 22 +hsa-miR-372-3p|0|-1|22M|0A0A2T17|CGAGCGCTGCGACATTTGAGCG 1.0 22 +hsa-miR-372-3p|0|-1|22M|22|AAAGTGCTGCGACATTTGAGCG 4.0 22 +hsa-miR-372-3p|0|-1|22M|3G18|AAATTGCTGCGACATTTGAGCG 3.0 23 +hsa-miR-372-3p|0|0|23M|1A20T0|AGAGTGCTGCGACATTTGAGCGA 1.0 23 +hsa-miR-372-3p|0|0|23M|22T|AAAGTGCTGCGACATTTGAGCGA 2.0 23 hsa-miR-372-3p 1.0 23 -hsa-miR-372-3p|0|0|23M|3G19 1.0 23 -hsa-miR-372-3p|1|0|21M1I1M|23 1.0 22 -hsa-miR-372-3p|1|0|22M|22 1.0 23 -hsa-miR-372-3p|1|0|4M1I18M|2G19 1.0 23 +hsa-miR-372-3p|0|0|23M|3G19|AAATTGCTGCGACATTTGAGCGT 1.0 23 +hsa-miR-372-3p|1|0|21M1I1M|23|AAGTGCTGCGACATTTGAGCGAT 1.0 22 +hsa-miR-372-3p|1|0|22M|22|AAGTGCTGCGACATTTGAGCGT 1.0 23 +hsa-miR-372-3p|1|0|4M1I18M|2G19|AACTTGCTGCGACATTTGAGCGT 1.0 23 hsa-miR-373-3p 2.0 23 hsa-miR-498-5p 1.0 21 -hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4 1.0 21 -hsa-miR-512-3p|0|-1|21M|20T 0.6666666666666666 21 -hsa-miR-512-3p|0|-1|21M|20T0 0.3333333333333333 21 -hsa-miR-512-3p|0|-1|21M|21 4.0 21 -hsa-miR-512-3p|0|-1|21M|7G13 1.0 20 -hsa-miR-512-3p|0|-2|20M|12A7 1.0 20 -hsa-miR-512-3p|0|-2|20M|20 4.0 22 -hsa-miR-512-3p|0|0|22M|12A9 1.0 22 -hsa-miR-512-3p|0|0|22M|17A4 1.0 22 -hsa-miR-512-3p|0|0|22M|21C 2.0 22 -hsa-miR-512-3p|0|0|22M|21C0 1.0 22 +hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4|GAACAGTGCTGTGATAACTGA 1.0 21 +hsa-miR-512-3p|0|-1|21M|20T|AAGTGCTGTCATAGCTGAGGA 0.6666666666666666 21 +hsa-miR-512-3p|0|-1|21M|20T0|AAGTGCTGTCATAGCTGAGGA 0.3333333333333333 21 +hsa-miR-512-3p|0|-1|21M|21|AAGTGCTGTCATAGCTGAGGT 4.0 21 +hsa-miR-512-3p|0|-1|21M|7G13|AAGTGCTTTCATAGCTGAGGT 1.0 20 +hsa-miR-512-3p|0|-2|20M|12A7|AAGTGCTGTCATCGCTGAGG 1.0 20 +hsa-miR-512-3p|0|-2|20M|20|AAGTGCTGTCATAGCTGAGG 4.0 22 +hsa-miR-512-3p|0|0|22M|12A9|AAGTGCTGTCATCGCTGAGGTC 1.0 22 +hsa-miR-512-3p|0|0|22M|17A4|AAGTGCTGTCATAGCTGCGGTC 1.0 22 +hsa-miR-512-3p|0|0|22M|21C|AAGTGCTGTCATAGCTGCGGTT 2.0 22 +hsa-miR-512-3p|0|0|22M|21C0|AAGTGCTGTCATAGCTGCGGTT 1.0 22 hsa-miR-512-3p 9.0 23 -hsa-miR-512-3p|0|1|23M|21C0C0 1.0 23 -hsa-miR-512-3p|0|1|23M|22C 1.6666666666666665 23 -hsa-miR-512-3p|0|1|23M|22C0 0.3333333333333333 23 -hsa-miR-512-3p|0|1|23M|3T18C0 1.0 21 -hsa-miR-512-5p|1|-1|21M|21 2.0 20 -hsa-miR-512-5p|1|-2|20M|20 1.0 22 -hsa-miR-512-5p|1|0|22M|22 1.0 21 -hsa-miR-515-3p|0|-1|21M|21 1.0 22 -hsa-miR-516a-5p|0|-1|22M|22 6.0 21 -hsa-miR-516a-5p|1|-1|21M|21 1.0 19 -hsa-miR-516b-5p|0|-3|19M|18C 0.6666666666666666 19 -hsa-miR-516b-5p|0|-3|19M|18C0 0.3333333333333333 22 -hsa-miR-516b-5p|0|0|22M|10A11 1.0 22 +hsa-miR-512-3p|0|1|23M|21C0C0|AAGTGCTGTCATAGCTGAGGTAG 1.0 23 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT 0.3333333333333333 23 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA 0.5 23 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT 0.3333333333333333 23 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA 0.5 23 +hsa-miR-512-3p|0|1|23M|22C0|AAGTGCTGTCATAGCTGAGGTCT 0.3333333333333333 23 +hsa-miR-512-3p|0|1|23M|3T18C0|AAGAGCTGTCATAGCTGAGGTCT 1.0 21 +hsa-miR-512-5p|1|-1|21M|21|ACTCAGCCTTGAGGGCACTTT 2.0 20 +hsa-miR-512-5p|1|-2|20M|20|ACTCAGCCTTGAGGGCACTT 1.0 22 +hsa-miR-512-5p|1|0|22M|22|ACTCAGCCTTGAGGGCACTTTC 1.0 21 +hsa-miR-515-3p|0|-1|21M|21|GAGTGCCTTCTTTTGGAGCGT 1.0 22 +hsa-miR-516a-5p|0|-1|22M|22|TTCTCGAGGAAAGAAGCACTTT 6.0 21 +hsa-miR-516a-5p|1|-1|21M|21|TCTCGAGGAAAGAAGCACTTT 1.0 19 +hsa-miR-516b-5p|0|-3|19M|18C|ATCTGGAGGTAAGAAGCAA 0.6666666666666666 19 +hsa-miR-516b-5p|0|-3|19M|18C0|ATCTGGAGGTAAGAAGCAA 0.3333333333333333 22 +hsa-miR-516b-5p|0|0|22M|10A11|ATCTGGAGGTCAGAAGCACTTT 1.0 22 hsa-miR-516b-5p 3.0 23 -hsa-miR-517-5p|-1|0|23M|22T 0.6000000000000001 23 -hsa-miR-517-5p|-1|0|23M|22T0 0.4 19 -hsa-miR-517-5p|4|2|6M1D13M|0T5^G13 1.0 19 -hsa-miR-517-5p|4|2|6M1D13M|6^G9C3 3.0 21 -hsa-miR-517a-3p|0|-1|21M|21 1.3333333333333333 22 +hsa-miR-517-5p|-1|0|23M|22T|CCCTCTAGATGGAAGCACTGTCA 0.6000000000000001 23 +hsa-miR-517-5p|-1|0|23M|22T0|CCCTCTAGATGGAAGCACTGTCA 0.4 19 +hsa-miR-517-5p|4|2|6M1D13M|0T5^G13|GAGATGAAGCACTGTCTGT 1.0 19 +hsa-miR-517-5p|4|2|6M1D13M|6^G9C3|TAGATGAAGCACTGTATGT 3.0 21 +hsa-miR-517a-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG 1.3333333333333333 22 hsa-miR-517a-3p 2.6666666666666665 21 -hsa-miR-517b-3p|0|-1|21M|21 0.6666666666666666 22 +hsa-miR-517b-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG 0.6666666666666666 22 hsa-miR-517b-3p 1.3333333333333333 22 hsa-miR-518b 1.0 21 -hsa-miR-518c-5p|1|-1|21M|21 1.0 20 -hsa-miR-518c-5p|1|-2|20M|19C 1.0 22 -hsa-miR-518c-5p|1|0|22M|22 1.0 21 -hsa-miR-518d-5p|0|-1|21M|20T 0.2222222222222222 21 -hsa-miR-518d-5p|0|-1|21M|20T0 0.2222222222222222 21 -hsa-miR-518d-5p|0|-1|21M|21 0.6666666666666666 21 -hsa-miR-518d-5p|0|-1|21M|3T16T0 0.2 20 -hsa-miR-518d-5p|0|-2|20M|20 0.4444444444444444 19 -hsa-miR-518d-5p|0|-3|19M|19 0.2222222222222222 22 +hsa-miR-518c-5p|1|-1|21M|21|CTCTGGAGGGAAGCACTTTCT 1.0 20 +hsa-miR-518c-5p|1|-2|20M|19C|CTCTGGAGGGAAGCACTTTA 1.0 22 +hsa-miR-518c-5p|1|0|22M|22|CTCTGGAGGGAAGCACTTTCTG 1.0 21 +hsa-miR-518d-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 21 +hsa-miR-518d-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 21 +hsa-miR-518d-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.6666666666666666 21 +hsa-miR-518d-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 20 +hsa-miR-518d-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC 0.4444444444444444 19 +hsa-miR-518d-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT 0.2222222222222222 22 hsa-miR-518d-5p 0.2857142857142857 21 hsa-miR-518e-3p 1.0 21 -hsa-miR-518e-5p|0|-1|21M|19C0T0 0.16666666666666666 21 -hsa-miR-518e-5p|0|-1|21M|21 2.1818181818181817 20 -hsa-miR-518e-5p|0|-2|20M|19C 0.09090909090909091 19 -hsa-miR-518e-5p|0|-3|19M|19 0.09090909090909091 22 +hsa-miR-518e-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 21 +hsa-miR-518e-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 2.1818181818181817 20 +hsa-miR-518e-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 19 +hsa-miR-518e-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.09090909090909091 22 hsa-miR-518e-5p 0.36363636363636365 23 -hsa-miR-518e-5p|0|1|23M|23 0.2727272727272727 21 -hsa-miR-518f-5p|0|-1|21M|20T 0.2222222222222222 21 -hsa-miR-518f-5p|0|-1|21M|21 0.3333333333333333 21 -hsa-miR-518f-5p|0|-1|21M|3T16T0 0.2 20 -hsa-miR-518f-5p|0|-2|20M|20 0.2222222222222222 19 -hsa-miR-518f-5p|0|-3|19M|19 0.1111111111111111 22 +hsa-miR-518e-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.2727272727272727 21 +hsa-miR-518f-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 21 +hsa-miR-518f-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.3333333333333333 21 +hsa-miR-518f-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 20 +hsa-miR-518f-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC 0.2222222222222222 19 +hsa-miR-518f-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT 0.1111111111111111 22 hsa-miR-518f-5p 1.0 22 -hsa-miR-519a-3p|0|0|22M|3G18 1.0 22 -hsa-miR-519a-5p|-1|-1|22M|21T 1.0 22 -hsa-miR-519a-5p|-1|-1|22M|22 5.0 20 -hsa-miR-519a-5p|-1|-3|20M|20 1.0 21 -hsa-miR-519a-5p|0|-1|21M|19C0T0 0.16666666666666666 21 -hsa-miR-519a-5p|0|-1|21M|21 4.363636363636363 20 -hsa-miR-519a-5p|0|-2|20M|19C 0.09090909090909091 20 -hsa-miR-519a-5p|0|-2|20M|19C0 0.09090909090909091 19 -hsa-miR-519a-5p|0|-3|19M|19 0.18181818181818182 22 +hsa-miR-519a-3p|0|0|22M|3G18|AAATTGCATCCTTTTAGAGTGT 1.0 22 +hsa-miR-519a-5p|-1|-1|22M|21T|ACTCTAGAGGGAAGCGCTTTCA 1.0 22 +hsa-miR-519a-5p|-1|-1|22M|22|ACTCTAGAGGGAAGCGCTTTCT 5.0 20 +hsa-miR-519a-5p|-1|-3|20M|20|ACTCTAGAGGGAAGCGCTTT 1.0 21 +hsa-miR-519a-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 21 +hsa-miR-519a-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 20 +hsa-miR-519a-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 20 +hsa-miR-519a-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 19 +hsa-miR-519a-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 22 hsa-miR-519a-5p 0.7272727272727273 23 -hsa-miR-519a-5p|0|1|23M|23 0.5454545454545454 21 -hsa-miR-519b-5p|0|-1|21M|19C0T0 0.16666666666666666 21 -hsa-miR-519b-5p|0|-1|21M|21 4.363636363636363 20 -hsa-miR-519b-5p|0|-2|20M|19C 0.09090909090909091 20 -hsa-miR-519b-5p|0|-2|20M|19C0 0.09090909090909091 19 -hsa-miR-519b-5p|0|-3|19M|19 0.18181818181818182 22 +hsa-miR-519a-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 21 +hsa-miR-519b-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 21 +hsa-miR-519b-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 20 +hsa-miR-519b-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 20 +hsa-miR-519b-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 19 +hsa-miR-519b-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 22 hsa-miR-519b-5p 0.7272727272727273 23 -hsa-miR-519b-5p|0|1|23M|23 0.5454545454545454 21 -hsa-miR-519c-5p|0|-1|21M|19C0T0 0.16666666666666666 21 -hsa-miR-519c-5p|0|-1|21M|21 4.363636363636363 20 -hsa-miR-519c-5p|0|-2|20M|19C 0.09090909090909091 20 -hsa-miR-519c-5p|0|-2|20M|19C0 0.09090909090909091 19 -hsa-miR-519c-5p|0|-3|19M|19 0.18181818181818182 22 +hsa-miR-519b-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 21 +hsa-miR-519c-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 21 +hsa-miR-519c-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 20 +hsa-miR-519c-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 20 +hsa-miR-519c-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 19 +hsa-miR-519c-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 22 hsa-miR-519c-5p 0.7272727272727273 23 -hsa-miR-519c-5p|0|1|23M|23 0.5454545454545454 21 -hsa-miR-519d-3p|0|-1|21M|21 1.0 20 -hsa-miR-519d-3p|0|-2|20M|20 2.0 22 +hsa-miR-519c-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 21 +hsa-miR-519d-3p|0|-1|21M|21|CAAAGTGCCTCCCTTTAGAGT 1.0 20 +hsa-miR-519d-3p|0|-2|20M|20|CAAAGTGCCTCCCTTTAGAG 2.0 22 hsa-miR-520a-3p 4.0 22 -hsa-miR-520a-3p|0|0|22M|3G18 1.0 23 -hsa-miR-520a-3p|0|1|23M|22T 1.0 21 -hsa-miR-520a-5p|0|0|21M|19C0T0 1.0 21 -hsa-miR-520a-5p|0|0|21M|20T 1.0 21 +hsa-miR-520a-3p|0|0|22M|3G18|AAAGTGCTTCCCTTTGGACTGT 1.0 23 +hsa-miR-520a-3p|0|1|23M|22T|AAAGTGCTTCCCTTTGGACTGTA 1.0 21 +hsa-miR-520a-5p|0|0|21M|19C0T0|CTCCAGAGGGAAGTACTTTGA 1.0 21 +hsa-miR-520a-5p|0|0|21M|20T|CTCCAGAGGGAAGTACTTTCG 1.0 21 hsa-miR-520a-5p 2.0 21 -hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1 1.0 23 -hsa-miR-520a-5p|0|1|19M1I3M|19C0T1 1.0 22 -hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0 3.0 22 -hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0 2.0 22 -hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0 3.0 23 -hsa-miR-520a-5p|0|2|23M|19C0T1T0 1.0 21 -hsa-miR-520b-3p|-1|-1|21M|21 0.4 22 -hsa-miR-520b-3p|0|1|22M|22 0.6666666666666666 21 -hsa-miR-520c-3p|-1|-2|21M|21 0.4 22 +hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1|CTCCAGAGGGAAGTACTTTAG 1.0 23 +hsa-miR-520a-5p|0|1|19M1I3M|19C0T1|CTCCAGAGGGAAGTACTTTGAAG 1.0 22 +hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0|CTCCAGAGGGAAGTACTTTAGA 3.0 22 +hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0|CTCCAGAGGGAAGTACTTTTAA 2.0 22 +hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0|CTCCAGAGGGAAGTACTTTCGA 3.0 23 +hsa-miR-520a-5p|0|2|23M|19C0T1T0|CTCCAGAGGGAAGTACTTTAAGA 1.0 21 +hsa-miR-520b-3p|-1|-1|21M|21|GAAAGTGCTTCCTTTTAGAGG 0.4 22 +hsa-miR-520b-3p|0|1|22M|22|AAAGTGCTTCCTTTTAGAGGGT 0.6666666666666666 21 +hsa-miR-520c-3p|-1|-2|21M|21|GAAAGTGCTTCCTTTTAGAGG 0.4 22 hsa-miR-520c-3p 1.3333333333333333 21 -hsa-miR-520c-5p|0|-1|21M|20T 0.2222222222222222 21 -hsa-miR-520c-5p|0|-1|21M|20T0 0.2222222222222222 21 -hsa-miR-520c-5p|0|-1|21M|21 0.6666666666666666 21 -hsa-miR-520c-5p|0|-1|21M|3T16T0 0.2 20 -hsa-miR-520c-5p|0|-2|20M|20 0.4444444444444444 19 -hsa-miR-520c-5p|0|-3|19M|19 0.2222222222222222 22 +hsa-miR-520c-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 21 +hsa-miR-520c-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 21 +hsa-miR-520c-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.6666666666666666 21 +hsa-miR-520c-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 20 +hsa-miR-520c-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC 0.4444444444444444 19 +hsa-miR-520c-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT 0.2222222222222222 22 hsa-miR-520c-5p 0.2857142857142857 21 hsa-miR-520e-3p 1.0 17 -hsa-miR-520e-5p|3|-3|7M1I9M|2G13 1.0 21 -hsa-miR-520g-3p|1|-2|21M|21 0.3333333333333333 23 -hsa-miR-520g-3p|1|0|23M|23 1.0 23 -hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8 1.0 21 -hsa-miR-520h|1|0|21M|21 0.6666666666666666 22 -hsa-miR-522-3p|0|0|22M|1A20 1.0 21 -hsa-miR-522-5p|0|-1|21M|19C0T0 0.16666666666666666 21 -hsa-miR-522-5p|0|-1|21M|21 4.363636363636363 20 -hsa-miR-522-5p|0|-2|20M|19C 0.09090909090909091 20 -hsa-miR-522-5p|0|-2|20M|19C0 0.09090909090909091 19 -hsa-miR-522-5p|0|-3|19M|19 0.18181818181818182 22 +hsa-miR-520e-5p|3|-3|7M1I9M|2G13|AAAATGGGAAGCAGTTT 1.0 21 +hsa-miR-520g-3p|1|-2|21M|21|CAAAGTGCTTCCCTTTAGAGT 0.3333333333333333 23 +hsa-miR-520g-3p|1|0|23M|23|CAAAGTGCTTCCCTTTAGAGTGT 1.0 23 +hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8|CCCTCTAGAGGAGCCTGTTCTGT 1.0 21 +hsa-miR-520h|1|0|21M|21|CAAAGTGCTTCCCTTTAGAGT 0.6666666666666666 22 +hsa-miR-522-3p|0|0|22M|1A20|AGAATGGTTCCCTTTAGAGTGT 1.0 21 +hsa-miR-522-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 21 +hsa-miR-522-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 20 +hsa-miR-522-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 20 +hsa-miR-522-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 19 +hsa-miR-522-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 22 hsa-miR-522-5p 0.7272727272727273 23 -hsa-miR-522-5p|0|1|23M|23 0.5454545454545454 21 -hsa-miR-523-5p|0|-1|21M|19C0T0 0.16666666666666666 21 -hsa-miR-523-5p|0|-1|21M|21 4.363636363636363 20 -hsa-miR-523-5p|0|-2|20M|19C 0.09090909090909091 20 -hsa-miR-523-5p|0|-2|20M|19C0 0.09090909090909091 19 -hsa-miR-523-5p|0|-3|19M|19 0.18181818181818182 22 +hsa-miR-522-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 21 +hsa-miR-523-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 21 +hsa-miR-523-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 20 +hsa-miR-523-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 20 +hsa-miR-523-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 19 +hsa-miR-523-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 22 hsa-miR-523-5p 0.7272727272727273 23 -hsa-miR-523-5p|0|1|23M|23 0.5454545454545454 21 -hsa-miR-524-5p|0|-1|21M|21 1.0 20 -hsa-miR-524-5p|0|-2|20M|20 1.0 20 -hsa-miR-525-5p|0|-1|20M|20 5.0 21 +hsa-miR-523-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 21 +hsa-miR-524-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 1.0 20 +hsa-miR-524-5p|0|-2|20M|20|CTACAAAGGGAAGCACTTTC 1.0 20 +hsa-miR-525-5p|0|-1|20M|20|CTCCAGAGGGATGCACTTTC 5.0 21 hsa-miR-525-5p 3.0 21 -hsa-miR-526a-5p|0|-1|21M|20T 0.4444444444444444 21 -hsa-miR-526a-5p|0|-1|21M|20T0 0.4444444444444444 21 -hsa-miR-526a-5p|0|-1|21M|21 1.3333333333333333 21 -hsa-miR-526a-5p|0|-1|21M|3T16T0 0.4 20 -hsa-miR-526a-5p|0|-2|20M|20 0.8888888888888888 19 -hsa-miR-526a-5p|0|-3|19M|19 0.4444444444444444 22 +hsa-miR-526a-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.4444444444444444 21 +hsa-miR-526a-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.4444444444444444 21 +hsa-miR-526a-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 1.3333333333333333 21 +hsa-miR-526a-5p|0|-1|21M|3T16T0|CTCTAGAGGGAAGCACTTTCA 0.4 20 +hsa-miR-526a-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC 0.8888888888888888 19 +hsa-miR-526a-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT 0.4444444444444444 22 hsa-miR-526a-5p 0.42857142857142855 22 diff --git a/scripts/tests/files/mirna_tag.sam b/scripts/tests/files/mirna_tag.sam index 97f55f2..3eac8be 100644 --- a/scripts/tests/files/mirna_tag.sam +++ b/scripts/tests/files/mirna_tag.sam @@ -3,32 +3,32 @@ @PG ID:samtools PN:samtools VN:1.16.1 CL:samtools sort -n -o results/test_lib/header_sorted_catMappings.sam results/test_lib/concatenated_header_catMappings.sam @PG ID:samtools.1 PN:samtools PP:samtools VN:1.16.1 CL:samtools view -H results/test_lib/removeMultimappers.sam @PG ID:samtools.2 PN:samtools PP:samtools.1 VN:1.16.1 CL:samtools view -H results/test_lib/premir_intersectedAlignments.sam -8-2_1 0 19 44414 255 21M * 0 0 GAAGGCGCTTCCCTTTGGAGT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-524-3p|0|0|21M|21 -13-1_1 0 19 44377 1 11M3I11M * 0 0 CTACAAAGGGAGGTAGCACTTTCTC * HI:i:0 MD:Z:22 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-524-5p|0|0|11M3I11M|22 -14-1_1 0 19 7590 1 20M3I3M * 0 0 TTTCAAGCCAGGGGGCGTTTCCGTTC * HI:i:0 MD:Z:23 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-498-5p|0|0|20M3I3M|23 -15-1_1 0 19 7590 255 23M * 0 0 TTTCAAGTCAGGGGGCGTTTTTC * MD:Z:7C15 NH:i:1 NM:i:1 YW:Z:hsa-miR-498-5p|0|0|23M|7C15 -20-1_1 0 19 7590 255 15M1D7M * 0 0 TTTCAAGCCAGGGGGGTTTTTC * MD:Z:15^C7 NH:i:1 NM:i:1 YW:Z:hsa-miR-498-5p|0|0|15M1D7M|15^C7 -22-1_1 0 19 5338 1 18M3I4M * 0 0 TCAAAACTGAGGGGCATTGGATTCT * HI:i:0 MD:Z:22 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-1323|0|0|18M3I4M|22 -24-1_1 0 19 44414 255 11M1I10M * 0 0 GAAGGCGCTTCACCTTTGGAGT * MD:Z:22 NH:i:1 NM:i:1 YW:Z:hsa-miR-524-3p|0|0|11M1I10M|22 -26-1_1 0 19 7626 255 7M1I16M * 0 0 AAAGCACTCTCCAGAGCTTGAAGC * MD:Z:24 NH:i:1 NM:i:1 YW:Z:hsa-miR-498-3p|0|0|7M1I16M|24 -31-1_1 0 19 7626 255 8M1D14M * 0 0 AAAGCACCCCAGAGCTTGAAGC * MD:Z:8^T14 NH:i:1 NM:i:1 YW:Z:hsa-miR-498-3p|0|0|8M1D14M|8^T14 -32-1_1 0 19 7626 1 23M * 0 0 AAAGCACCTCTTGAGCTTGAAGC * HI:i:0 MD:Z:10C0A11 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-498-3p|0|0|23M|10C0A11 -33-1_1 0 19 44377 255 18M1I4M * 0 0 CTACAAAGGGAAGCACTTGTCTC * MD:Z:23 NH:i:1 NM:i:1 YW:Z:hsa-miR-524-5p|0|0|18M1I4M|23 -34-1_1 0 19 7590 1 23M * 0 0 TTTCAAGCCAGATGGCGTTTTTC * HI:i:0 MD:Z:11G0G10 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-498-5p|0|0|23M|11G0G10 -39-1_1 0 19 7590 255 19M1I4M * 0 0 TTTCAAGCCAGGGGGCGTTATTTC * MD:Z:24 NH:i:1 NM:i:1 YW:Z:hsa-miR-498-5p|0|0|19M1I4M|24 -41-1_1 0 19 5338 255 15M1I7M * 0 0 TCAAAACTGAGGGGCTATTTTCT * MD:Z:23 NH:i:1 NM:i:1 YW:Z:hsa-miR-1323|0|0|15M1I7M|23 -44-1_1 0 19 5338 255 22M * 0 0 TCAAAACTGAGGGGCATTTTCT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-1323|0|0|22M|22 -46-1_1 0 19 5338 1 22M * 0 0 TCAAAACTGAGGGGCATGCTCT * HI:i:0 MD:Z:17T0T3 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-1323|0|0|22M|17T0T3 +8-2_1 0 19 44414 255 21M * 0 0 GAAGGCGCTTCCCTTTGGAGT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-524-3p|0|0|21M|21|GAAGGCGCTTCCCTTTGGAGT +13-1_1 0 19 44377 1 11M3I11M * 0 0 CTACAAAGGGAGGTAGCACTTTCTC * HI:i:0 MD:Z:22 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z: +14-1_1 0 19 7590 1 20M3I3M * 0 0 TTTCAAGCCAGGGGGCGTTTCCGTTC * HI:i:0 MD:Z:23 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z: +15-1_1 0 19 7590 255 23M * 0 0 TTTCAAGTCAGGGGGCGTTTTTC * MD:Z:7C15 NH:i:1 NM:i:1 YW:Z:hsa-miR-498-5p|0|0|23M|7C15|TTTCAAGTCAGGGGGCGTTTTTC +20-1_1 0 19 7590 255 15M1D7M * 0 0 TTTCAAGCCAGGGGGGTTTTTC * MD:Z:15^C7 NH:i:1 NM:i:1 YW:Z: +22-1_1 0 19 5338 1 18M3I4M * 0 0 TCAAAACTGAGGGGCATTGGATTCT * HI:i:0 MD:Z:22 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z: +24-1_1 0 19 44414 255 11M1I10M * 0 0 GAAGGCGCTTCACCTTTGGAGT * MD:Z:22 NH:i:1 NM:i:1 YW:Z: +26-1_1 0 19 7626 255 7M1I16M * 0 0 AAAGCACTCTCCAGAGCTTGAAGC * MD:Z:24 NH:i:1 NM:i:1 YW:Z: +31-1_1 0 19 7626 255 8M1D14M * 0 0 AAAGCACCCCAGAGCTTGAAGC * MD:Z:8^T14 NH:i:1 NM:i:1 YW:Z: +32-1_1 0 19 7626 1 23M * 0 0 AAAGCACCTCTTGAGCTTGAAGC * HI:i:0 MD:Z:10C0A11 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-498-3p|0|0|23M|10C0A11|AAAGCACCTCTTGAGCTTGAAGC +33-1_1 0 19 44377 255 18M1I4M * 0 0 CTACAAAGGGAAGCACTTGTCTC * MD:Z:23 NH:i:1 NM:i:1 YW:Z: +34-1_1 0 19 7590 1 23M * 0 0 TTTCAAGCCAGATGGCGTTTTTC * HI:i:0 MD:Z:11G0G10 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-498-5p|0|0|23M|11G0G10|TTTCAAGCCAGATGGCGTTTTTC +39-1_1 0 19 7590 255 19M1I4M * 0 0 TTTCAAGCCAGGGGGCGTTATTTC * MD:Z:24 NH:i:1 NM:i:1 YW:Z: +41-1_1 0 19 5338 255 15M1I7M * 0 0 TCAAAACTGAGGGGCTATTTTCT * MD:Z:23 NH:i:1 NM:i:1 YW:Z: +44-1_1 0 19 5338 255 22M * 0 0 TCAAAACTGAGGGGCATTTTCT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-1323|0|0|22M|22|TCAAAACTGAGGGGCATTTTCT +46-1_1 0 19 5338 1 22M * 0 0 TCAAAACTGAGGGGCATGCTCT * HI:i:0 MD:Z:17T0T3 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-1323|0|0|22M|17T0T3|TCAAAACTGAGGGGCATGCTCT 48-1_1 0 19 5338 255 21M * 0 0 TCAAAACTGAGGGGCATTTTC * MD:Z:21 NH:i:1 NM:i:0 YW:Z: -49-1_1 0 19 7626 1 12M3I11M * 0 0 AAAGCACCTCCATTTGAGCTTGAAGC * HI:i:0 MD:Z:23 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-498-3p|0|0|12M3I11M|23 -54-1_1 0 19 7590 255 23M * 0 0 TTTCAAGCCAGGGGGCGTTTTTC * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-498-5p|0|0|23M|23 -56-1_1 0 19 44377 1 22M * 0 0 CTACAAAGGTAAGCACTTTATC * HI:i:0 MD:Z:9G9C2 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-524-5p|0|0|22M|9G9C2 -57-1_1 0 19 7626 255 23M * 0 0 AAAGCACCTCCAGAGCTTGAAGC * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-498-3p|0|0|23M|23 -58-1_1 0 19 44414 255 21M * 0 0 GAAGGCGCTTCACTTTGGAGT * MD:Z:11C9 NH:i:1 NM:i:1 YW:Z:hsa-miR-524-3p|0|0|21M|11C9 -59-1_1 0 19 44377 255 22M * 0 0 CTACAAAGGGAAGCACTTTCTC * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-524-5p|0|0|22M|22 -66-1_1 0 19 5338 255 22M * 0 0 TCAAAACTGAGGTGCATTTTCT * MD:Z:12G9 NH:i:1 NM:i:1 YW:Z:hsa-miR-1323|0|0|22M|12G9 -71-1_1 0 19 7626 255 23M * 0 0 AAAGCACCACCAGAGCTTGAAGC * MD:Z:8T14 NH:i:1 NM:i:1 YW:Z:hsa-miR-498-3p|0|0|23M|8T14 -72-1_1 0 19 44377 255 22M * 0 0 CTACAAAGGTAAGCACTTTCTC * MD:Z:9G12 NH:i:1 NM:i:1 YW:Z:hsa-miR-524-5p|0|0|22M|9G12 +49-1_1 0 19 7626 1 12M3I11M * 0 0 AAAGCACCTCCATTTGAGCTTGAAGC * HI:i:0 MD:Z:23 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z: +54-1_1 0 19 7590 255 23M * 0 0 TTTCAAGCCAGGGGGCGTTTTTC * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-498-5p|0|0|23M|23|TTTCAAGCCAGGGGGCGTTTTTC +56-1_1 0 19 44377 1 22M * 0 0 CTACAAAGGTAAGCACTTTATC * HI:i:0 MD:Z:9G9C2 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-524-5p|0|0|22M|9G9C2|CTACAAAGGTAAGCACTTTATC +57-1_1 0 19 7626 255 23M * 0 0 AAAGCACCTCCAGAGCTTGAAGC * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-498-3p|0|0|23M|23|AAAGCACCTCCAGAGCTTGAAGC +58-1_1 0 19 44414 255 21M * 0 0 GAAGGCGCTTCACTTTGGAGT * MD:Z:11C9 NH:i:1 NM:i:1 YW:Z:hsa-miR-524-3p|0|0|21M|11C9|GAAGGCGCTTCACTTTGGAGT +59-1_1 0 19 44377 255 22M * 0 0 CTACAAAGGGAAGCACTTTCTC * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-524-5p|0|0|22M|22|CTACAAAGGGAAGCACTTTCTC +66-1_1 0 19 5338 255 22M * 0 0 TCAAAACTGAGGTGCATTTTCT * MD:Z:12G9 NH:i:1 NM:i:1 YW:Z:hsa-miR-1323|0|0|22M|12G9|TCAAAACTGAGGTGCATTTTCT +71-1_1 0 19 7626 255 23M * 0 0 AAAGCACCACCAGAGCTTGAAGC * MD:Z:8T14 NH:i:1 NM:i:1 YW:Z:hsa-miR-498-3p|0|0|23M|8T14|AAAGCACCACCAGAGCTTGAAGC +72-1_1 0 19 44377 255 22M * 0 0 CTACAAAGGTAAGCACTTTCTC * MD:Z:9G12 NH:i:1 NM:i:1 YW:Z:hsa-miR-524-5p|0|0|22M|9G12|CTACAAAGGTAAGCACTTTCTC 90-1_1 0 19 44415 255 20M * 0 0 AAGGCGCTTCCCTTTGGAGT * MD:Z:20 NH:i:1 NM:i:0 YW:Z: 92-1_1 0 19 5338 1 9M1D3M1D7M * 0 0 TCAAAACTGGGGCATTTTC * HI:i:0 MD:Z:9^A3^G7 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z: 94-1_1 0 19 44377 255 19M * 0 0 CTACAAAGGGAAGCACTTT * MD:Z:19 NH:i:1 NM:i:0 YW:Z: diff --git a/scripts/tests/files/mirna_tag_extension.sam b/scripts/tests/files/mirna_tag_extension.sam index 92d26a4..3979435 100644 --- a/scripts/tests/files/mirna_tag_extension.sam +++ b/scripts/tests/files/mirna_tag_extension.sam @@ -3,33 +3,33 @@ @PG ID:samtools PN:samtools VN:1.16.1 CL:samtools sort -n -o results/test_lib/header_sorted_catMappings.sam results/test_lib/concatenated_header_catMappings.sam @PG ID:samtools.1 PN:samtools PP:samtools VN:1.16.1 CL:samtools view -H results/test_lib/removeMultimappers.sam @PG ID:samtools.2 PN:samtools PP:samtools.1 VN:1.16.1 CL:samtools view -H results/test_lib/premir_intersectedAlignments.sam -8-2_1 0 19 44414 255 21M * 0 0 GAAGGCGCTTCCCTTTGGAGT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-524-3p|0|0|21M|21 -13-1_1 0 19 44377 1 11M3I11M * 0 0 CTACAAAGGGAGGTAGCACTTTCTC * HI:i:0 MD:Z:22 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-524-5p|0|0|11M3I11M|22 -14-1_1 0 19 7590 1 20M3I3M * 0 0 TTTCAAGCCAGGGGGCGTTTCCGTTC * HI:i:0 MD:Z:23 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-498-5p|0|0|20M3I3M|23 -15-1_1 0 19 7590 255 23M * 0 0 TTTCAAGTCAGGGGGCGTTTTTC * MD:Z:7C15 NH:i:1 NM:i:1 YW:Z:hsa-miR-498-5p|0|0|23M|7C15 -20-1_1 0 19 7590 255 15M1D7M * 0 0 TTTCAAGCCAGGGGGGTTTTTC * MD:Z:15^C7 NH:i:1 NM:i:1 YW:Z:hsa-miR-498-5p|0|0|15M1D7M|15^C7 -22-1_1 0 19 5338 1 18M3I4M * 0 0 TCAAAACTGAGGGGCATTGGATTCT * HI:i:0 MD:Z:22 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-1323|0|0|18M3I4M|22 -24-1_1 0 19 44414 255 11M1I10M * 0 0 GAAGGCGCTTCACCTTTGGAGT * MD:Z:22 NH:i:1 NM:i:1 YW:Z:hsa-miR-524-3p|0|0|11M1I10M|22 -26-1_1 0 19 7626 255 7M1I16M * 0 0 AAAGCACTCTCCAGAGCTTGAAGC * MD:Z:24 NH:i:1 NM:i:1 YW:Z:hsa-miR-498-3p|0|0|7M1I16M|24 -31-1_1 0 19 7626 255 8M1D14M * 0 0 AAAGCACCCCAGAGCTTGAAGC * MD:Z:8^T14 NH:i:1 NM:i:1 YW:Z:hsa-miR-498-3p|0|0|8M1D14M|8^T14 -32-1_1 0 19 7626 1 23M * 0 0 AAAGCACCTCTTGAGCTTGAAGC * HI:i:0 MD:Z:10C0A11 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-498-3p|0|0|23M|10C0A11 -33-1_1 0 19 44377 255 18M1I4M * 0 0 CTACAAAGGGAAGCACTTGTCTC * MD:Z:23 NH:i:1 NM:i:1 YW:Z:hsa-miR-524-5p|0|0|18M1I4M|23 -34-1_1 0 19 7590 1 23M * 0 0 TTTCAAGCCAGATGGCGTTTTTC * HI:i:0 MD:Z:11G0G10 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-498-5p|0|0|23M|11G0G10 -39-1_1 0 19 7590 255 19M1I4M * 0 0 TTTCAAGCCAGGGGGCGTTATTTC * MD:Z:24 NH:i:1 NM:i:1 YW:Z:hsa-miR-498-5p|0|0|19M1I4M|24 -41-1_1 0 19 5338 255 15M1I7M * 0 0 TCAAAACTGAGGGGCTATTTTCT * MD:Z:23 NH:i:1 NM:i:1 YW:Z:hsa-miR-1323|0|0|15M1I7M|23 -44-1_1 0 19 5338 255 22M * 0 0 TCAAAACTGAGGGGCATTTTCT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-1323|0|0|22M|22 -46-1_1 0 19 5338 1 22M * 0 0 TCAAAACTGAGGGGCATGCTCT * HI:i:0 MD:Z:17T0T3 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-1323|0|0|22M|17T0T3 -48-1_1 0 19 5338 255 21M * 0 0 TCAAAACTGAGGGGCATTTTC * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-1323|0|-1|21M|21 -49-1_1 0 19 7626 1 12M3I11M * 0 0 AAAGCACCTCCATTTGAGCTTGAAGC * HI:i:0 MD:Z:23 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-498-3p|0|0|12M3I11M|23 -54-1_1 0 19 7590 255 23M * 0 0 TTTCAAGCCAGGGGGCGTTTTTC * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-498-5p|0|0|23M|23 -56-1_1 0 19 44377 1 22M * 0 0 CTACAAAGGTAAGCACTTTATC * HI:i:0 MD:Z:9G9C2 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-524-5p|0|0|22M|9G9C2 -57-1_1 0 19 7626 255 23M * 0 0 AAAGCACCTCCAGAGCTTGAAGC * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-498-3p|0|0|23M|23 -58-1_1 0 19 44414 255 21M * 0 0 GAAGGCGCTTCACTTTGGAGT * MD:Z:11C9 NH:i:1 NM:i:1 YW:Z:hsa-miR-524-3p|0|0|21M|11C9 -59-1_1 0 19 44377 255 22M * 0 0 CTACAAAGGGAAGCACTTTCTC * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-524-5p|0|0|22M|22 -66-1_1 0 19 5338 255 22M * 0 0 TCAAAACTGAGGTGCATTTTCT * MD:Z:12G9 NH:i:1 NM:i:1 YW:Z:hsa-miR-1323|0|0|22M|12G9 -71-1_1 0 19 7626 255 23M * 0 0 AAAGCACCACCAGAGCTTGAAGC * MD:Z:8T14 NH:i:1 NM:i:1 YW:Z:hsa-miR-498-3p|0|0|23M|8T14 -72-1_1 0 19 44377 255 22M * 0 0 CTACAAAGGTAAGCACTTTCTC * MD:Z:9G12 NH:i:1 NM:i:1 YW:Z:hsa-miR-524-5p|0|0|22M|9G12 -90-1_1 0 19 44415 255 20M * 0 0 AAGGCGCTTCCCTTTGGAGT * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-524-3p|1|0|20M|20 -92-1_1 0 19 5338 1 9M1D3M1D7M * 0 0 TCAAAACTGGGGCATTTTC * HI:i:0 MD:Z:9^A3^G7 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-1323|0|-1|9M1D3M1D7M|9^A3^G7 -94-1_1 0 19 44377 255 19M * 0 0 CTACAAAGGGAAGCACTTT * MD:Z:19 NH:i:1 NM:i:0 YW:Z:hsa-miR-524-5p|0|-3|19M|19 -95-1_1 0 19 44415 1 7M2D11M * 0 0 AAGGCGCCCCTTTGGAGT * HI:i:0 MD:Z:7^TT11 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-524-3p|1|0|7M2D11M|7^TT11 +8-2_1 0 19 44414 255 21M * 0 0 GAAGGCGCTTCCCTTTGGAGT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-524-3p|0|0|21M|21|GAAGGCGCTTCCCTTTGGAGT +13-1_1 0 19 44377 1 11M3I11M * 0 0 CTACAAAGGGAGGTAGCACTTTCTC * HI:i:0 MD:Z:22 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-524-5p|0|3|11M3I11M|22|CTACAAAGGGAGGTAGCACTTTCTC +14-1_1 0 19 7590 1 20M3I3M * 0 0 TTTCAAGCCAGGGGGCGTTTCCGTTC * HI:i:0 MD:Z:23 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-498-5p|0|3|20M3I3M|23|TTTCAAGCCAGGGGGCGTTTCCGTTC +15-1_1 0 19 7590 255 23M * 0 0 TTTCAAGTCAGGGGGCGTTTTTC * MD:Z:7C15 NH:i:1 NM:i:1 YW:Z:hsa-miR-498-5p|0|0|23M|7C15|TTTCAAGTCAGGGGGCGTTTTTC +20-1_1 0 19 7590 255 15M1D7M * 0 0 TTTCAAGCCAGGGGGGTTTTTC * MD:Z:15^C7 NH:i:1 NM:i:1 YW:Z:hsa-miR-498-5p|0|-1|15M1D7M|15^C7|TTTCAAGCCAGGGGGGTTTTTC +22-1_1 0 19 5338 1 18M3I4M * 0 0 TCAAAACTGAGGGGCATTGGATTCT * HI:i:0 MD:Z:22 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-1323|0|3|18M3I4M|22|TCAAAACTGAGGGGCATTGGATTCT +24-1_1 0 19 44414 255 11M1I10M * 0 0 GAAGGCGCTTCACCTTTGGAGT * MD:Z:22 NH:i:1 NM:i:1 YW:Z:hsa-miR-524-3p|0|1|11M1I10M|22|GAAGGCGCTTCACCTTTGGAGT +26-1_1 0 19 7626 255 7M1I16M * 0 0 AAAGCACTCTCCAGAGCTTGAAGC * MD:Z:24 NH:i:1 NM:i:1 YW:Z:hsa-miR-498-3p|0|1|7M1I16M|24|AAAGCACTCTCCAGAGCTTGAAGC +31-1_1 0 19 7626 255 8M1D14M * 0 0 AAAGCACCCCAGAGCTTGAAGC * MD:Z:8^T14 NH:i:1 NM:i:1 YW:Z:hsa-miR-498-3p|0|-1|8M1D14M|8^T14|AAAGCACCCCAGAGCTTGAAGC +32-1_1 0 19 7626 1 23M * 0 0 AAAGCACCTCTTGAGCTTGAAGC * HI:i:0 MD:Z:10C0A11 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-498-3p|0|0|23M|10C0A11|AAAGCACCTCTTGAGCTTGAAGC +33-1_1 0 19 44377 255 18M1I4M * 0 0 CTACAAAGGGAAGCACTTGTCTC * MD:Z:23 NH:i:1 NM:i:1 YW:Z:hsa-miR-524-5p|0|1|18M1I4M|23|CTACAAAGGGAAGCACTTGTCTC +34-1_1 0 19 7590 1 23M * 0 0 TTTCAAGCCAGATGGCGTTTTTC * HI:i:0 MD:Z:11G0G10 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-498-5p|0|0|23M|11G0G10|TTTCAAGCCAGATGGCGTTTTTC +39-1_1 0 19 7590 255 19M1I4M * 0 0 TTTCAAGCCAGGGGGCGTTATTTC * MD:Z:24 NH:i:1 NM:i:1 YW:Z:hsa-miR-498-5p|0|1|19M1I4M|24|TTTCAAGCCAGGGGGCGTTATTTC +41-1_1 0 19 5338 255 15M1I7M * 0 0 TCAAAACTGAGGGGCTATTTTCT * MD:Z:23 NH:i:1 NM:i:1 YW:Z:hsa-miR-1323|0|1|15M1I7M|23|TCAAAACTGAGGGGCTATTTTCT +44-1_1 0 19 5338 255 22M * 0 0 TCAAAACTGAGGGGCATTTTCT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-1323|0|0|22M|22|TCAAAACTGAGGGGCATTTTCT +46-1_1 0 19 5338 1 22M * 0 0 TCAAAACTGAGGGGCATGCTCT * HI:i:0 MD:Z:17T0T3 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-1323|0|0|22M|17T0T3|TCAAAACTGAGGGGCATGCTCT +48-1_1 0 19 5338 255 21M * 0 0 TCAAAACTGAGGGGCATTTTC * MD:Z:21 NH:i:1 NM:i:0 YW:Z:hsa-miR-1323|0|-1|21M|21|TCAAAACTGAGGGGCATTTTC +49-1_1 0 19 7626 1 12M3I11M * 0 0 AAAGCACCTCCATTTGAGCTTGAAGC * HI:i:0 MD:Z:23 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-498-3p|0|3|12M3I11M|23|AAAGCACCTCCATTTGAGCTTGAAGC +54-1_1 0 19 7590 255 23M * 0 0 TTTCAAGCCAGGGGGCGTTTTTC * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-498-5p|0|0|23M|23|TTTCAAGCCAGGGGGCGTTTTTC +56-1_1 0 19 44377 1 22M * 0 0 CTACAAAGGTAAGCACTTTATC * HI:i:0 MD:Z:9G9C2 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-524-5p|0|0|22M|9G9C2|CTACAAAGGTAAGCACTTTATC +57-1_1 0 19 7626 255 23M * 0 0 AAAGCACCTCCAGAGCTTGAAGC * MD:Z:23 NH:i:1 NM:i:0 YW:Z:hsa-miR-498-3p|0|0|23M|23|AAAGCACCTCCAGAGCTTGAAGC +58-1_1 0 19 44414 255 21M * 0 0 GAAGGCGCTTCACTTTGGAGT * MD:Z:11C9 NH:i:1 NM:i:1 YW:Z:hsa-miR-524-3p|0|0|21M|11C9|GAAGGCGCTTCACTTTGGAGT +59-1_1 0 19 44377 255 22M * 0 0 CTACAAAGGGAAGCACTTTCTC * MD:Z:22 NH:i:1 NM:i:0 YW:Z:hsa-miR-524-5p|0|0|22M|22|CTACAAAGGGAAGCACTTTCTC +66-1_1 0 19 5338 255 22M * 0 0 TCAAAACTGAGGTGCATTTTCT * MD:Z:12G9 NH:i:1 NM:i:1 YW:Z:hsa-miR-1323|0|0|22M|12G9|TCAAAACTGAGGTGCATTTTCT +71-1_1 0 19 7626 255 23M * 0 0 AAAGCACCACCAGAGCTTGAAGC * MD:Z:8T14 NH:i:1 NM:i:1 YW:Z:hsa-miR-498-3p|0|0|23M|8T14|AAAGCACCACCAGAGCTTGAAGC +72-1_1 0 19 44377 255 22M * 0 0 CTACAAAGGTAAGCACTTTCTC * MD:Z:9G12 NH:i:1 NM:i:1 YW:Z:hsa-miR-524-5p|0|0|22M|9G12|CTACAAAGGTAAGCACTTTCTC +90-1_1 0 19 44415 255 20M * 0 0 AAGGCGCTTCCCTTTGGAGT * MD:Z:20 NH:i:1 NM:i:0 YW:Z:hsa-miR-524-3p|1|0|20M|20|AAGGCGCTTCCCTTTGGAGT +92-1_1 0 19 5338 1 9M1D3M1D7M * 0 0 TCAAAACTGGGGCATTTTC * HI:i:0 MD:Z:9^A3^G7 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-1323|0|-3|9M1D3M1D7M|9^A3^G7|TCAAAACTGGGGCATTTTC +94-1_1 0 19 44377 255 19M * 0 0 CTACAAAGGGAAGCACTTT * MD:Z:19 NH:i:1 NM:i:0 YW:Z:hsa-miR-524-5p|0|-3|19M|19|CTACAAAGGGAAGCACTTT +95-1_1 0 19 44415 1 7M2D11M * 0 0 AAGGCGCCCCTTTGGAGT * HI:i:0 MD:Z:7^TT11 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:hsa-miR-524-3p|1|-2|7M2D11M|7^TT11|AAGGCGCCCCTTTGGAGT diff --git a/scripts/tests/files/mirna_tag_id.sam b/scripts/tests/files/mirna_tag_id.sam index d45e954..7b47e3a 100644 --- a/scripts/tests/files/mirna_tag_id.sam +++ b/scripts/tests/files/mirna_tag_id.sam @@ -3,32 +3,32 @@ @PG ID:samtools PN:samtools VN:1.16.1 CL:samtools sort -n -o results/test_lib/header_sorted_catMappings.sam results/test_lib/concatenated_header_catMappings.sam @PG ID:samtools.1 PN:samtools PP:samtools VN:1.16.1 CL:samtools view -H results/test_lib/removeMultimappers.sam @PG ID:samtools.2 PN:samtools PP:samtools.1 VN:1.16.1 CL:samtools view -H results/test_lib/premir_intersectedAlignments.sam -8-2_1 0 19 44414 255 21M * 0 0 GAAGGCGCTTCCCTTTGGAGT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:MIMAT0002850|0|0|21M|21 -13-1_1 0 19 44377 1 11M3I11M * 0 0 CTACAAAGGGAGGTAGCACTTTCTC * HI:i:0 MD:Z:22 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:MIMAT0002849|0|0|11M3I11M|22 -14-1_1 0 19 7590 1 20M3I3M * 0 0 TTTCAAGCCAGGGGGCGTTTCCGTTC * HI:i:0 MD:Z:23 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:MIMAT0002824|0|0|20M3I3M|23 -15-1_1 0 19 7590 255 23M * 0 0 TTTCAAGTCAGGGGGCGTTTTTC * MD:Z:7C15 NH:i:1 NM:i:1 YW:Z:MIMAT0002824|0|0|23M|7C15 -20-1_1 0 19 7590 255 15M1D7M * 0 0 TTTCAAGCCAGGGGGGTTTTTC * MD:Z:15^C7 NH:i:1 NM:i:1 YW:Z:MIMAT0002824|0|0|15M1D7M|15^C7 -22-1_1 0 19 5338 1 18M3I4M * 0 0 TCAAAACTGAGGGGCATTGGATTCT * HI:i:0 MD:Z:22 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:MIMAT0005795|0|0|18M3I4M|22 -24-1_1 0 19 44414 255 11M1I10M * 0 0 GAAGGCGCTTCACCTTTGGAGT * MD:Z:22 NH:i:1 NM:i:1 YW:Z:MIMAT0002850|0|0|11M1I10M|22 -26-1_1 0 19 7626 255 7M1I16M * 0 0 AAAGCACTCTCCAGAGCTTGAAGC * MD:Z:24 NH:i:1 NM:i:1 YW:Z:MIMAT0037323|0|0|7M1I16M|24 -31-1_1 0 19 7626 255 8M1D14M * 0 0 AAAGCACCCCAGAGCTTGAAGC * MD:Z:8^T14 NH:i:1 NM:i:1 YW:Z:MIMAT0037323|0|0|8M1D14M|8^T14 -32-1_1 0 19 7626 1 23M * 0 0 AAAGCACCTCTTGAGCTTGAAGC * HI:i:0 MD:Z:10C0A11 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:MIMAT0037323|0|0|23M|10C0A11 -33-1_1 0 19 44377 255 18M1I4M * 0 0 CTACAAAGGGAAGCACTTGTCTC * MD:Z:23 NH:i:1 NM:i:1 YW:Z:MIMAT0002849|0|0|18M1I4M|23 -34-1_1 0 19 7590 1 23M * 0 0 TTTCAAGCCAGATGGCGTTTTTC * HI:i:0 MD:Z:11G0G10 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:MIMAT0002824|0|0|23M|11G0G10 -39-1_1 0 19 7590 255 19M1I4M * 0 0 TTTCAAGCCAGGGGGCGTTATTTC * MD:Z:24 NH:i:1 NM:i:1 YW:Z:MIMAT0002824|0|0|19M1I4M|24 -41-1_1 0 19 5338 255 15M1I7M * 0 0 TCAAAACTGAGGGGCTATTTTCT * MD:Z:23 NH:i:1 NM:i:1 YW:Z:MIMAT0005795|0|0|15M1I7M|23 -44-1_1 0 19 5338 255 22M * 0 0 TCAAAACTGAGGGGCATTTTCT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:MIMAT0005795|0|0|22M|22 -46-1_1 0 19 5338 1 22M * 0 0 TCAAAACTGAGGGGCATGCTCT * HI:i:0 MD:Z:17T0T3 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:MIMAT0005795|0|0|22M|17T0T3 +8-2_1 0 19 44414 255 21M * 0 0 GAAGGCGCTTCCCTTTGGAGT * MD:Z:21 NH:i:1 NM:i:0 YW:Z:MIMAT0002850|0|0|21M|21|GAAGGCGCTTCCCTTTGGAGT +13-1_1 0 19 44377 1 11M3I11M * 0 0 CTACAAAGGGAGGTAGCACTTTCTC * HI:i:0 MD:Z:22 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z: +14-1_1 0 19 7590 1 20M3I3M * 0 0 TTTCAAGCCAGGGGGCGTTTCCGTTC * HI:i:0 MD:Z:23 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z: +15-1_1 0 19 7590 255 23M * 0 0 TTTCAAGTCAGGGGGCGTTTTTC * MD:Z:7C15 NH:i:1 NM:i:1 YW:Z:MIMAT0002824|0|0|23M|7C15|TTTCAAGTCAGGGGGCGTTTTTC +20-1_1 0 19 7590 255 15M1D7M * 0 0 TTTCAAGCCAGGGGGGTTTTTC * MD:Z:15^C7 NH:i:1 NM:i:1 YW:Z: +22-1_1 0 19 5338 1 18M3I4M * 0 0 TCAAAACTGAGGGGCATTGGATTCT * HI:i:0 MD:Z:22 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z: +24-1_1 0 19 44414 255 11M1I10M * 0 0 GAAGGCGCTTCACCTTTGGAGT * MD:Z:22 NH:i:1 NM:i:1 YW:Z: +26-1_1 0 19 7626 255 7M1I16M * 0 0 AAAGCACTCTCCAGAGCTTGAAGC * MD:Z:24 NH:i:1 NM:i:1 YW:Z: +31-1_1 0 19 7626 255 8M1D14M * 0 0 AAAGCACCCCAGAGCTTGAAGC * MD:Z:8^T14 NH:i:1 NM:i:1 YW:Z: +32-1_1 0 19 7626 1 23M * 0 0 AAAGCACCTCTTGAGCTTGAAGC * HI:i:0 MD:Z:10C0A11 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:MIMAT0037323|0|0|23M|10C0A11|AAAGCACCTCTTGAGCTTGAAGC +33-1_1 0 19 44377 255 18M1I4M * 0 0 CTACAAAGGGAAGCACTTGTCTC * MD:Z:23 NH:i:1 NM:i:1 YW:Z: +34-1_1 0 19 7590 1 23M * 0 0 TTTCAAGCCAGATGGCGTTTTTC * HI:i:0 MD:Z:11G0G10 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:MIMAT0002824|0|0|23M|11G0G10|TTTCAAGCCAGATGGCGTTTTTC +39-1_1 0 19 7590 255 19M1I4M * 0 0 TTTCAAGCCAGGGGGCGTTATTTC * MD:Z:24 NH:i:1 NM:i:1 YW:Z: +41-1_1 0 19 5338 255 15M1I7M * 0 0 TCAAAACTGAGGGGCTATTTTCT * MD:Z:23 NH:i:1 NM:i:1 YW:Z: +44-1_1 0 19 5338 255 22M * 0 0 TCAAAACTGAGGGGCATTTTCT * MD:Z:22 NH:i:1 NM:i:0 YW:Z:MIMAT0005795|0|0|22M|22|TCAAAACTGAGGGGCATTTTCT +46-1_1 0 19 5338 1 22M * 0 0 TCAAAACTGAGGGGCATGCTCT * HI:i:0 MD:Z:17T0T3 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:MIMAT0005795|0|0|22M|17T0T3|TCAAAACTGAGGGGCATGCTCT 48-1_1 0 19 5338 255 21M * 0 0 TCAAAACTGAGGGGCATTTTC * MD:Z:21 NH:i:1 NM:i:0 YW:Z: -49-1_1 0 19 7626 1 12M3I11M * 0 0 AAAGCACCTCCATTTGAGCTTGAAGC * HI:i:0 MD:Z:23 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z:MIMAT0037323|0|0|12M3I11M|23 -54-1_1 0 19 7590 255 23M * 0 0 TTTCAAGCCAGGGGGCGTTTTTC * MD:Z:23 NH:i:1 NM:i:0 YW:Z:MIMAT0002824|0|0|23M|23 -56-1_1 0 19 44377 1 22M * 0 0 CTACAAAGGTAAGCACTTTATC * HI:i:0 MD:Z:9G9C2 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:MIMAT0002849|0|0|22M|9G9C2 -57-1_1 0 19 7626 255 23M * 0 0 AAAGCACCTCCAGAGCTTGAAGC * MD:Z:23 NH:i:1 NM:i:0 YW:Z:MIMAT0037323|0|0|23M|23 -58-1_1 0 19 44414 255 21M * 0 0 GAAGGCGCTTCACTTTGGAGT * MD:Z:11C9 NH:i:1 NM:i:1 YW:Z:MIMAT0002850|0|0|21M|11C9 -59-1_1 0 19 44377 255 22M * 0 0 CTACAAAGGGAAGCACTTTCTC * MD:Z:22 NH:i:1 NM:i:0 YW:Z:MIMAT0002849|0|0|22M|22 -66-1_1 0 19 5338 255 22M * 0 0 TCAAAACTGAGGTGCATTTTCT * MD:Z:12G9 NH:i:1 NM:i:1 YW:Z:MIMAT0005795|0|0|22M|12G9 -71-1_1 0 19 7626 255 23M * 0 0 AAAGCACCACCAGAGCTTGAAGC * MD:Z:8T14 NH:i:1 NM:i:1 YW:Z:MIMAT0037323|0|0|23M|8T14 -72-1_1 0 19 44377 255 22M * 0 0 CTACAAAGGTAAGCACTTTCTC * MD:Z:9G12 NH:i:1 NM:i:1 YW:Z:MIMAT0002849|0|0|22M|9G12 +49-1_1 0 19 7626 1 12M3I11M * 0 0 AAAGCACCTCCATTTGAGCTTGAAGC * HI:i:0 MD:Z:23 NH:i:1 NM:i:3 RG:Z:A1 YZ:Z:0 YW:Z: +54-1_1 0 19 7590 255 23M * 0 0 TTTCAAGCCAGGGGGCGTTTTTC * MD:Z:23 NH:i:1 NM:i:0 YW:Z:MIMAT0002824|0|0|23M|23|TTTCAAGCCAGGGGGCGTTTTTC +56-1_1 0 19 44377 1 22M * 0 0 CTACAAAGGTAAGCACTTTATC * HI:i:0 MD:Z:9G9C2 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z:MIMAT0002849|0|0|22M|9G9C2|CTACAAAGGTAAGCACTTTATC +57-1_1 0 19 7626 255 23M * 0 0 AAAGCACCTCCAGAGCTTGAAGC * MD:Z:23 NH:i:1 NM:i:0 YW:Z:MIMAT0037323|0|0|23M|23|AAAGCACCTCCAGAGCTTGAAGC +58-1_1 0 19 44414 255 21M * 0 0 GAAGGCGCTTCACTTTGGAGT * MD:Z:11C9 NH:i:1 NM:i:1 YW:Z:MIMAT0002850|0|0|21M|11C9|GAAGGCGCTTCACTTTGGAGT +59-1_1 0 19 44377 255 22M * 0 0 CTACAAAGGGAAGCACTTTCTC * MD:Z:22 NH:i:1 NM:i:0 YW:Z:MIMAT0002849|0|0|22M|22|CTACAAAGGGAAGCACTTTCTC +66-1_1 0 19 5338 255 22M * 0 0 TCAAAACTGAGGTGCATTTTCT * MD:Z:12G9 NH:i:1 NM:i:1 YW:Z:MIMAT0005795|0|0|22M|12G9|TCAAAACTGAGGTGCATTTTCT +71-1_1 0 19 7626 255 23M * 0 0 AAAGCACCACCAGAGCTTGAAGC * MD:Z:8T14 NH:i:1 NM:i:1 YW:Z:MIMAT0037323|0|0|23M|8T14|AAAGCACCACCAGAGCTTGAAGC +72-1_1 0 19 44377 255 22M * 0 0 CTACAAAGGTAAGCACTTTCTC * MD:Z:9G12 NH:i:1 NM:i:1 YW:Z:MIMAT0002849|0|0|22M|9G12|CTACAAAGGTAAGCACTTTCTC 90-1_1 0 19 44415 255 20M * 0 0 AAGGCGCTTCCCTTTGGAGT * MD:Z:20 NH:i:1 NM:i:0 YW:Z: 92-1_1 0 19 5338 1 9M1D3M1D7M * 0 0 TCAAAACTGGGGCATTTTC * HI:i:0 MD:Z:9^A3^G7 NH:i:1 NM:i:2 RG:Z:A1 YZ:Z:0 YW:Z: 94-1_1 0 19 44377 255 19M * 0 0 CTACAAAGGGAAGCACTTT * MD:Z:19 NH:i:1 NM:i:0 YW:Z: diff --git a/scripts/tests/files/missing_nh_iso_mirna_quantification b/scripts/tests/files/missing_nh_iso_mirna_quantification index 864d18a..182d1c6 100644 --- a/scripts/tests/files/missing_nh_iso_mirna_quantification +++ b/scripts/tests/files/missing_nh_iso_mirna_quantification @@ -1,157 +1,160 @@ -hsa-miR-1323|0|-1|21M|21 1.0 +hsa-miR-1323|0|-1|21M|21|TCAAAACTGAGGGGCATTTTC 1.0 hsa-miR-1323 1.0 hsa-miR-371a-5p 1.0 -hsa-miR-371a-5p|0|3|23M|17A3T0C0 1.0 -hsa-miR-371b-3p|0|-1|22M|22 1.0 -hsa-miR-372-3p|0|-1|22M|0A0A2T17 1.0 -hsa-miR-372-3p|0|-1|22M|22 1.0 -hsa-miR-372-3p|0|-1|22M|3G18 1.0 -hsa-miR-372-3p|0|0|23M|1A20T0 1.0 -hsa-miR-372-3p|0|0|23M|22T 1.0 +hsa-miR-371a-5p|0|3|23M|17A3T0C0|ACTCAAACTGTGGGGGCACTTAG 1.0 +hsa-miR-371b-3p|0|-1|22M|22|GCACTCAAACTGTGGGGGCACT 1.0 +hsa-miR-372-3p|0|-1|22M|0A0A2T17|CGAGCGCTGCGACATTTGAGCG 1.0 +hsa-miR-372-3p|0|-1|22M|22|AAAGTGCTGCGACATTTGAGCG 1.0 +hsa-miR-372-3p|0|-1|22M|3G18|AAATTGCTGCGACATTTGAGCG 1.0 +hsa-miR-372-3p|0|0|23M|1A20T0|AGAGTGCTGCGACATTTGAGCGA 1.0 +hsa-miR-372-3p|0|0|23M|22T|AAAGTGCTGCGACATTTGAGCGA 1.0 hsa-miR-372-3p 1.0 -hsa-miR-372-3p|0|0|23M|3G19 1.0 -hsa-miR-372-3p|1|0|21M1I1M|23 1.0 -hsa-miR-372-3p|1|0|22M|22 1.0 -hsa-miR-372-3p|1|0|4M1I18M|2G19 1.0 +hsa-miR-372-3p|0|0|23M|3G19|AAATTGCTGCGACATTTGAGCGT 1.0 +hsa-miR-372-3p|1|0|21M1I1M|23|AAGTGCTGCGACATTTGAGCGAT 1.0 +hsa-miR-372-3p|1|0|22M|22|AAGTGCTGCGACATTTGAGCGT 1.0 +hsa-miR-372-3p|1|0|4M1I18M|2G19|AACTTGCTGCGACATTTGAGCGT 1.0 hsa-miR-373-3p 1.0 hsa-miR-498-5p 1.0 -hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4 2.0 -hsa-miR-512-3p|0|-1|21M|20T 2.0 -hsa-miR-512-3p|0|-1|21M|20T0 1.0 -hsa-miR-512-3p|0|-1|21M|21 3.0 -hsa-miR-512-3p|0|-1|21M|7G13 5.0 -hsa-miR-512-3p|0|-2|20M|12A7 3.0 -hsa-miR-512-3p|0|-2|20M|20 5.0 -hsa-miR-512-3p|0|0|22M|12A9 3.0 -hsa-miR-512-3p|0|0|22M|17A4 5.0 -hsa-miR-512-3p|0|0|22M|21C 4.0 -hsa-miR-512-3p|0|0|22M|21C0 1.0 -hsa-miR-512-3p 3.0 -hsa-miR-512-3p|0|1|23M|21C0C0 2.0 -hsa-miR-512-3p|0|1|23M|22C 4.0 -hsa-miR-512-3p|0|1|23M|22C0 1.0 -hsa-miR-512-3p|0|1|23M|3T18C0 2.0 -hsa-miR-512-5p|1|-1|21M|21 3.0 -hsa-miR-512-5p|1|-2|20M|20 3.0 -hsa-miR-512-5p|1|0|22M|22 3.0 -hsa-miR-515-3p|0|-1|21M|21 3.0 -hsa-miR-516a-5p|0|-1|22M|22 3.0 -hsa-miR-516a-5p|1|-1|21M|21 7.0 -hsa-miR-516b-5p|0|-3|19M|18C 2.0 -hsa-miR-516b-5p|0|-3|19M|18C0 1.0 -hsa-miR-516b-5p|0|0|22M|10A11 3.0 -hsa-miR-516b-5p 3.0 -hsa-miR-517-5p|-1|0|23M|22T 15.0 -hsa-miR-517-5p|-1|0|23M|22T0 2.0 -hsa-miR-517-5p|4|2|6M1D13M|0T5^G13 3.0 -hsa-miR-517-5p|4|2|6M1D13M|6^G9C3 3.0 -hsa-miR-517a-3p|0|-1|21M|21 2.0 -hsa-miR-517a-3p 2.0 -hsa-miR-517b-3p|0|-1|21M|21 1.0 -hsa-miR-517b-3p 1.0 +hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4|GAACAGTGCTGTGATAACTGA 2.0 +hsa-miR-512-3p|0|-1|21M|20T|AAGTGCTGTCATAGCTGAGGA 6.0 +hsa-miR-512-3p|0|-1|21M|20T0|AAGTGCTGTCATAGCTGAGGA 3.0 +hsa-miR-512-3p|0|-1|21M|21|AAGTGCTGTCATAGCTGAGGT 9.0 +hsa-miR-512-3p|0|-1|21M|7G13|AAGTGCTTTCATAGCTGAGGT 9.0 +hsa-miR-512-3p|0|-2|20M|12A7|AAGTGCTGTCATCGCTGAGG 9.0 +hsa-miR-512-3p|0|-2|20M|20|AAGTGCTGTCATAGCTGAGG 9.0 +hsa-miR-512-3p|0|0|22M|12A9|AAGTGCTGTCATCGCTGAGGTC 9.0 +hsa-miR-512-3p|0|0|22M|17A4|AAGTGCTGTCATAGCTGCGGTC 9.0 +hsa-miR-512-3p|0|0|22M|21C|AAGTGCTGTCATAGCTGCGGTT 6.0 +hsa-miR-512-3p|0|0|22M|21C0|AAGTGCTGTCATAGCTGCGGTT 3.0 +hsa-miR-512-3p 9.0 +hsa-miR-512-3p|0|1|23M|21C0C0|AAGTGCTGTCATAGCTGAGGTAG 2.0 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT 3.0 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA 1.0 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT 3.0 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA 1.0 +hsa-miR-512-3p|0|1|23M|22C0|AAGTGCTGTCATAGCTGAGGTCT 3.0 +hsa-miR-512-3p|0|1|23M|3T18C0|AAGAGCTGTCATAGCTGAGGTCT 2.0 +hsa-miR-512-5p|1|-1|21M|21|ACTCAGCCTTGAGGGCACTTT 9.0 +hsa-miR-512-5p|1|-2|20M|20|ACTCAGCCTTGAGGGCACTT 9.0 +hsa-miR-512-5p|1|0|22M|22|ACTCAGCCTTGAGGGCACTTTC 9.0 +hsa-miR-515-3p|0|-1|21M|21|GAGTGCCTTCTTTTGGAGCGT 9.0 +hsa-miR-516a-5p|0|-1|22M|22|TTCTCGAGGAAAGAAGCACTTT 9.0 +hsa-miR-516a-5p|1|-1|21M|21|TCTCGAGGAAAGAAGCACTTT 9.0 +hsa-miR-516b-5p|0|-3|19M|18C|ATCTGGAGGTAAGAAGCAA 6.0 +hsa-miR-516b-5p|0|-3|19M|18C0|ATCTGGAGGTAAGAAGCAA 3.0 +hsa-miR-516b-5p|0|0|22M|10A11|ATCTGGAGGTCAGAAGCACTTT 9.0 +hsa-miR-516b-5p 9.0 +hsa-miR-517-5p|-1|0|23M|22T|CCCTCTAGATGGAAGCACTGTCA 3.0 +hsa-miR-517-5p|-1|0|23M|22T0|CCCTCTAGATGGAAGCACTGTCA 2.0 +hsa-miR-517-5p|4|2|6M1D13M|0T5^G13|GAGATGAAGCACTGTCTGT 9.0 +hsa-miR-517-5p|4|2|6M1D13M|6^G9C3|TAGATGAAGCACTGTATGT 9.0 +hsa-miR-517a-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG 6.0 +hsa-miR-517a-3p 6.0 +hsa-miR-517b-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG 3.0 +hsa-miR-517b-3p 3.0 hsa-miR-518b 1.0 -hsa-miR-518c-5p|1|-1|21M|21 1.0 -hsa-miR-518c-5p|1|-2|20M|19C 1.0 -hsa-miR-518c-5p|1|0|22M|22 1.0 -hsa-miR-518d-5p|0|-1|21M|20T 1.0 -hsa-miR-518d-5p|0|-1|21M|20T0 1.0 -hsa-miR-518d-5p|0|-1|21M|21 10.0 -hsa-miR-518d-5p|0|-1|21M|3T16T0 1.0 -hsa-miR-518d-5p|0|-2|20M|20 10.0 -hsa-miR-518d-5p|0|-3|19M|19 2.0 -hsa-miR-518d-5p 8.0 +hsa-miR-518c-5p|1|-1|21M|21|CTCTGGAGGGAAGCACTTTCT 1.0 +hsa-miR-518c-5p|1|-2|20M|19C|CTCTGGAGGGAAGCACTTTA 1.0 +hsa-miR-518c-5p|1|0|22M|22|CTCTGGAGGGAAGCACTTTCTG 1.0 +hsa-miR-518d-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 1.0 +hsa-miR-518d-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 1.0 +hsa-miR-518d-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 2.0 +hsa-miR-518d-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 1.0 +hsa-miR-518d-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC 2.0 +hsa-miR-518d-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT 2.0 +hsa-miR-518d-5p 2.0 hsa-miR-518e-3p 1.0 -hsa-miR-518e-5p|0|-1|21M|19C0T0 1.0 -hsa-miR-518e-5p|0|-1|21M|21 11.0 -hsa-miR-518e-5p|0|-2|20M|19C 1.0 -hsa-miR-518e-5p|0|-3|19M|19 1.0 +hsa-miR-518e-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 1.0 +hsa-miR-518e-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 1.0 +hsa-miR-518e-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 1.0 +hsa-miR-518e-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 1.0 hsa-miR-518e-5p 1.0 -hsa-miR-518e-5p|0|1|23M|23 1.0 -hsa-miR-518f-5p|0|-1|21M|20T 1.0 -hsa-miR-518f-5p|0|-1|21M|21 1.0 -hsa-miR-518f-5p|0|-1|21M|3T16T0 1.0 -hsa-miR-518f-5p|0|-2|20M|20 1.0 -hsa-miR-518f-5p|0|-3|19M|19 1.0 +hsa-miR-518e-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 1.0 +hsa-miR-518f-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 1.0 +hsa-miR-518f-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 1.0 +hsa-miR-518f-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 1.0 +hsa-miR-518f-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC 1.0 +hsa-miR-518f-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT 1.0 hsa-miR-518f-5p 1.0 -hsa-miR-519a-3p|0|0|22M|3G18 5.0 -hsa-miR-519a-5p|-1|-1|22M|21T 1.0 -hsa-miR-519a-5p|-1|-1|22M|22 1.0 -hsa-miR-519a-5p|-1|-3|20M|20 1.0 -hsa-miR-519a-5p|0|-1|21M|19C0T0 1.0 -hsa-miR-519a-5p|0|-1|21M|21 12.0 -hsa-miR-519a-5p|0|-2|20M|19C 1.0 -hsa-miR-519a-5p|0|-2|20M|19C0 1.0 -hsa-miR-519a-5p|0|-3|19M|19 2.0 +hsa-miR-519a-3p|0|0|22M|3G18|AAATTGCATCCTTTTAGAGTGT 9.0 +hsa-miR-519a-5p|-1|-1|22M|21T|ACTCTAGAGGGAAGCGCTTTCA 1.0 +hsa-miR-519a-5p|-1|-1|22M|22|ACTCTAGAGGGAAGCGCTTTCT 1.0 +hsa-miR-519a-5p|-1|-3|20M|20|ACTCTAGAGGGAAGCGCTTT 1.0 +hsa-miR-519a-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 1.0 +hsa-miR-519a-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 2.0 +hsa-miR-519a-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 1.0 +hsa-miR-519a-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 1.0 +hsa-miR-519a-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 2.0 hsa-miR-519a-5p 2.0 -hsa-miR-519a-5p|0|1|23M|23 2.0 -hsa-miR-519b-5p|0|-1|21M|19C0T0 1.0 -hsa-miR-519b-5p|0|-1|21M|21 2.0 -hsa-miR-519b-5p|0|-2|20M|19C 11.0 -hsa-miR-519b-5p|0|-2|20M|19C0 1.0 -hsa-miR-519b-5p|0|-3|19M|19 2.0 +hsa-miR-519a-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 2.0 +hsa-miR-519b-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 1.0 +hsa-miR-519b-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 2.0 +hsa-miR-519b-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 1.0 +hsa-miR-519b-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 1.0 +hsa-miR-519b-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 2.0 hsa-miR-519b-5p 2.0 -hsa-miR-519b-5p|0|1|23M|23 2.0 -hsa-miR-519c-5p|0|-1|21M|19C0T0 1.0 -hsa-miR-519c-5p|0|-1|21M|21 2.0 -hsa-miR-519c-5p|0|-2|20M|19C 1.0 -hsa-miR-519c-5p|0|-2|20M|19C0 1.0 -hsa-miR-519c-5p|0|-3|19M|19 2.0 +hsa-miR-519b-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 2.0 +hsa-miR-519c-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 1.0 +hsa-miR-519c-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 2.0 +hsa-miR-519c-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 1.0 +hsa-miR-519c-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 1.0 +hsa-miR-519c-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 2.0 hsa-miR-519c-5p 2.0 -hsa-miR-519c-5p|0|1|23M|23 12.0 -hsa-miR-519d-3p|0|-1|21M|21 1.0 -hsa-miR-519d-3p|0|-2|20M|20 1.0 +hsa-miR-519c-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 2.0 +hsa-miR-519d-3p|0|-1|21M|21|CAAAGTGCCTCCCTTTAGAGT 1.0 +hsa-miR-519d-3p|0|-2|20M|20|CAAAGTGCCTCCCTTTAGAG 1.0 hsa-miR-520a-3p 1.0 -hsa-miR-520a-3p|0|0|22M|3G18 1.0 -hsa-miR-520a-3p|0|1|23M|22T 1.0 -hsa-miR-520a-5p|0|0|21M|19C0T0 1.0 -hsa-miR-520a-5p|0|0|21M|20T 1.0 +hsa-miR-520a-3p|0|0|22M|3G18|AAAGTGCTTCCCTTTGGACTGT 1.0 +hsa-miR-520a-3p|0|1|23M|22T|AAAGTGCTTCCCTTTGGACTGTA 1.0 +hsa-miR-520a-5p|0|0|21M|19C0T0|CTCCAGAGGGAAGTACTTTGA 1.0 +hsa-miR-520a-5p|0|0|21M|20T|CTCCAGAGGGAAGTACTTTCG 1.0 hsa-miR-520a-5p 1.0 -hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1 1.0 -hsa-miR-520a-5p|0|1|19M1I3M|19C0T1 1.0 -hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0 1.0 -hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0 1.0 -hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0 1.0 -hsa-miR-520a-5p|0|2|23M|19C0T1T0 1.0 -hsa-miR-520b-3p|-1|-1|21M|21 2.0 -hsa-miR-520b-3p|0|1|22M|22 1.0 -hsa-miR-520c-3p|-1|-2|21M|21 2.0 -hsa-miR-520c-3p 2.0 -hsa-miR-520c-5p|0|-1|21M|20T 1.0 -hsa-miR-520c-5p|0|-1|21M|20T0 1.0 -hsa-miR-520c-5p|0|-1|21M|21 2.0 -hsa-miR-520c-5p|0|-1|21M|3T16T0 1.0 -hsa-miR-520c-5p|0|-2|20M|20 2.0 -hsa-miR-520c-5p|0|-3|19M|19 10.0 -hsa-miR-520c-5p 8.0 +hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1|CTCCAGAGGGAAGTACTTTAG 1.0 +hsa-miR-520a-5p|0|1|19M1I3M|19C0T1|CTCCAGAGGGAAGTACTTTGAAG 1.0 +hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0|CTCCAGAGGGAAGTACTTTAGA 1.0 +hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0|CTCCAGAGGGAAGTACTTTTAA 1.0 +hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0|CTCCAGAGGGAAGTACTTTCGA 1.0 +hsa-miR-520a-5p|0|2|23M|19C0T1T0|CTCCAGAGGGAAGTACTTTAAGA 1.0 +hsa-miR-520b-3p|-1|-1|21M|21|GAAAGTGCTTCCTTTTAGAGG 2.0 +hsa-miR-520b-3p|0|1|22M|22|AAAGTGCTTCCTTTTAGAGGGT 3.0 +hsa-miR-520c-3p|-1|-2|21M|21|GAAAGTGCTTCCTTTTAGAGG 2.0 +hsa-miR-520c-3p 6.0 +hsa-miR-520c-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 1.0 +hsa-miR-520c-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 1.0 +hsa-miR-520c-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 2.0 +hsa-miR-520c-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 1.0 +hsa-miR-520c-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC 2.0 +hsa-miR-520c-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT 2.0 +hsa-miR-520c-5p 2.0 hsa-miR-520e-3p 1.0 -hsa-miR-520e-5p|3|-3|7M1I9M|2G13 1.0 -hsa-miR-520g-3p|1|-2|21M|21 1.0 -hsa-miR-520g-3p|1|0|23M|23 1.0 -hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8 1.0 -hsa-miR-520h|1|0|21M|21 2.0 -hsa-miR-522-3p|0|0|22M|1A20 1.0 -hsa-miR-522-5p|0|-1|21M|19C0T0 1.0 -hsa-miR-522-5p|0|-1|21M|21 2.0 -hsa-miR-522-5p|0|-2|20M|19C 1.0 -hsa-miR-522-5p|0|-2|20M|19C0 1.0 -hsa-miR-522-5p|0|-3|19M|19 2.0 +hsa-miR-520e-5p|3|-3|7M1I9M|2G13|AAAATGGGAAGCAGTTT 1.0 +hsa-miR-520g-3p|1|-2|21M|21|CAAAGTGCTTCCCTTTAGAGT 3.0 +hsa-miR-520g-3p|1|0|23M|23|CAAAGTGCTTCCCTTTAGAGTGT 1.0 +hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8|CCCTCTAGAGGAGCCTGTTCTGT 1.0 +hsa-miR-520h|1|0|21M|21|CAAAGTGCTTCCCTTTAGAGT 6.0 +hsa-miR-522-3p|0|0|22M|1A20|AGAATGGTTCCCTTTAGAGTGT 1.0 +hsa-miR-522-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 1.0 +hsa-miR-522-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 2.0 +hsa-miR-522-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 1.0 +hsa-miR-522-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 1.0 +hsa-miR-522-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 2.0 hsa-miR-522-5p 2.0 -hsa-miR-522-5p|0|1|23M|23 2.0 -hsa-miR-523-5p|0|-1|21M|19C0T0 1.0 -hsa-miR-523-5p|0|-1|21M|21 2.0 -hsa-miR-523-5p|0|-2|20M|19C 1.0 -hsa-miR-523-5p|0|-2|20M|19C0 1.0 -hsa-miR-523-5p|0|-3|19M|19 12.0 +hsa-miR-522-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 2.0 +hsa-miR-523-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 1.0 +hsa-miR-523-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 2.0 +hsa-miR-523-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 1.0 +hsa-miR-523-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 1.0 +hsa-miR-523-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 2.0 hsa-miR-523-5p 2.0 -hsa-miR-523-5p|0|1|23M|23 2.0 -hsa-miR-524-5p|0|-1|21M|21 1.0 -hsa-miR-524-5p|0|-2|20M|20 1.0 -hsa-miR-525-5p|0|-1|20M|20 1.0 +hsa-miR-523-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 2.0 +hsa-miR-524-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 1.0 +hsa-miR-524-5p|0|-2|20M|20|CTACAAAGGGAAGCACTTTC 1.0 +hsa-miR-525-5p|0|-1|20M|20|CTCCAGAGGGATGCACTTTC 1.0 hsa-miR-525-5p 1.0 -hsa-miR-526a-5p|0|-1|21M|20T 2.0 -hsa-miR-526a-5p|0|-1|21M|20T0 18.0 -hsa-miR-526a-5p|0|-1|21M|21 4.0 -hsa-miR-526a-5p|0|-1|21M|3T16T0 2.0 -hsa-miR-526a-5p|0|-2|20M|20 4.0 -hsa-miR-526a-5p|0|-3|19M|19 12.0 -hsa-miR-526a-5p 15.0 +hsa-miR-526a-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 2.0 +hsa-miR-526a-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 2.0 +hsa-miR-526a-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 4.0 +hsa-miR-526a-5p|0|-1|21M|3T16T0|CTCTAGAGGGAAGCACTTTCA 2.0 +hsa-miR-526a-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC 4.0 +hsa-miR-526a-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT 4.0 +hsa-miR-526a-5p 3.0 diff --git a/scripts/tests/files/read_ids_iso_mirna_quantification b/scripts/tests/files/read_ids_iso_mirna_quantification index 2246a1d..18bab50 100644 --- a/scripts/tests/files/read_ids_iso_mirna_quantification +++ b/scripts/tests/files/read_ids_iso_mirna_quantification @@ -1,157 +1,160 @@ -hsa-miR-1323|0|-1|21M|21 1.0 709268-1_1 +hsa-miR-1323|0|-1|21M|21|TCAAAACTGAGGGGCATTTTC 1.0 709268-1_1 hsa-miR-1323 1.0 528546-1_1 hsa-miR-371a-5p 1.0 270342-1_1 -hsa-miR-371a-5p|0|3|23M|17A3T0C0 1.0 840419-1_1 -hsa-miR-371b-3p|0|-1|22M|22 2.0 120522-2_1 -hsa-miR-372-3p|0|-1|22M|0A0A2T17 1.0 299969-1_1 -hsa-miR-372-3p|0|-1|22M|22 4.0 67825-4_1 -hsa-miR-372-3p|0|-1|22M|3G18 3.0 90583-3_1 -hsa-miR-372-3p|0|0|23M|1A20T0 1.0 629861-1_1 -hsa-miR-372-3p|0|0|23M|22T 2.0 120521-2_1 +hsa-miR-371a-5p|0|3|23M|17A3T0C0|ACTCAAACTGTGGGGGCACTTAG 1.0 840419-1_1 +hsa-miR-371b-3p|0|-1|22M|22|GCACTCAAACTGTGGGGGCACT 2.0 120522-2_1 +hsa-miR-372-3p|0|-1|22M|0A0A2T17|CGAGCGCTGCGACATTTGAGCG 1.0 299969-1_1 +hsa-miR-372-3p|0|-1|22M|22|AAAGTGCTGCGACATTTGAGCG 4.0 67825-4_1 +hsa-miR-372-3p|0|-1|22M|3G18|AAATTGCTGCGACATTTGAGCG 3.0 90583-3_1 +hsa-miR-372-3p|0|0|23M|1A20T0|AGAGTGCTGCGACATTTGAGCGA 1.0 629861-1_1 +hsa-miR-372-3p|0|0|23M|22T|AAAGTGCTGCGACATTTGAGCGA 2.0 120521-2_1 hsa-miR-372-3p 1.0 739110-1_1 -hsa-miR-372-3p|0|0|23M|3G19 1.0 270338-1_1 -hsa-miR-372-3p|1|0|21M1I1M|23 1.0 267649-1_1 -hsa-miR-372-3p|1|0|22M|22 1.0 313132-1_1 -hsa-miR-372-3p|1|0|4M1I18M|2G19 1.0 270337-1_1 +hsa-miR-372-3p|0|0|23M|3G19|AAATTGCTGCGACATTTGAGCGT 1.0 270338-1_1 +hsa-miR-372-3p|1|0|21M1I1M|23|AAGTGCTGCGACATTTGAGCGAT 1.0 267649-1_1 +hsa-miR-372-3p|1|0|22M|22|AAGTGCTGCGACATTTGAGCGT 1.0 313132-1_1 +hsa-miR-372-3p|1|0|4M1I18M|2G19|AACTTGCTGCGACATTTGAGCGT 1.0 270337-1_1 hsa-miR-373-3p 2.0 188149-2_1 hsa-miR-498-5p 1.0 270393-1_1 -hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4 1.0 610105-1_2;610105-1_2 -hsa-miR-512-3p|0|-1|21M|20T 0.6666666666666666 645839-1_3;645839-1_3 -hsa-miR-512-3p|0|-1|21M|20T0 0.3333333333333333 645839-1_3 -hsa-miR-512-3p|0|-1|21M|21 4.0 67830-4_3;67830-4_3;67830-4_3 -hsa-miR-512-3p|0|-1|21M|7G13 1.0 535182-1_3;535182-1_3;535182-1_3 -hsa-miR-512-3p|0|-2|20M|12A7 1.0 766380-1_3;766380-1_3;766380-1_3 -hsa-miR-512-3p|0|-2|20M|20 4.0 67831-4_3;67831-4_3;67831-4_3 -hsa-miR-512-3p|0|0|22M|12A9 1.0 270395-1_3;270395-1_3;270395-1_3 -hsa-miR-512-3p|0|0|22M|17A4 1.0 773136-1_3;773136-1_3;773136-1_3 -hsa-miR-512-3p|0|0|22M|21C 2.0 102065-3_3;102065-3_3 -hsa-miR-512-3p|0|0|22M|21C0 1.0 102065-3_3 +hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4|GAACAGTGCTGTGATAACTGA 1.0 610105-1_2;610105-1_2 +hsa-miR-512-3p|0|-1|21M|20T|AAGTGCTGTCATAGCTGAGGA 0.6666666666666666 645839-1_3;645839-1_3 +hsa-miR-512-3p|0|-1|21M|20T0|AAGTGCTGTCATAGCTGAGGA 0.3333333333333333 645839-1_3 +hsa-miR-512-3p|0|-1|21M|21|AAGTGCTGTCATAGCTGAGGT 4.0 67830-4_3;67830-4_3;67830-4_3 +hsa-miR-512-3p|0|-1|21M|7G13|AAGTGCTTTCATAGCTGAGGT 1.0 535182-1_3;535182-1_3;535182-1_3 +hsa-miR-512-3p|0|-2|20M|12A7|AAGTGCTGTCATCGCTGAGG 1.0 766380-1_3;766380-1_3;766380-1_3 +hsa-miR-512-3p|0|-2|20M|20|AAGTGCTGTCATAGCTGAGG 4.0 67831-4_3;67831-4_3;67831-4_3 +hsa-miR-512-3p|0|0|22M|12A9|AAGTGCTGTCATCGCTGAGGTC 1.0 270395-1_3;270395-1_3;270395-1_3 +hsa-miR-512-3p|0|0|22M|17A4|AAGTGCTGTCATAGCTGCGGTC 1.0 773136-1_3;773136-1_3;773136-1_3 +hsa-miR-512-3p|0|0|22M|21C|AAGTGCTGTCATAGCTGCGGTT 2.0 102065-3_3;102065-3_3 +hsa-miR-512-3p|0|0|22M|21C0|AAGTGCTGTCATAGCTGCGGTT 1.0 102065-3_3 hsa-miR-512-3p 9.0 37896-9_3;37896-9_3;37896-9_3 -hsa-miR-512-3p|0|1|23M|21C0C0 1.0 334943-1_2;334943-1_2 -hsa-miR-512-3p|0|1|23M|22C 1.6666666666666665 270396-1_3;270401-1_2;270396-1_3;270401-1_2 -hsa-miR-512-3p|0|1|23M|22C0 0.3333333333333333 270396-1_3 -hsa-miR-512-3p|0|1|23M|3T18C0 1.0 673650-1_2;673650-1_2 -hsa-miR-512-5p|1|-1|21M|21 2.0 150819-2_3;150819-2_3;150819-2_3 -hsa-miR-512-5p|1|-2|20M|20 1.0 270402-1_3;270402-1_3;270402-1_3 -hsa-miR-512-5p|1|0|22M|22 1.0 752875-1_3;752875-1_3;752875-1_3 -hsa-miR-515-3p|0|-1|21M|21 1.0 369314-1_3;369314-1_3;369314-1_3 -hsa-miR-516a-5p|0|-1|22M|22 6.0 54840-6_3;54840-6_3;54840-6_3 -hsa-miR-516a-5p|1|-1|21M|21 1.0 423555-1_3;423555-1_3;423555-1_3 -hsa-miR-516b-5p|0|-3|19M|18C 0.6666666666666666 270365-1_3;270365-1_3 -hsa-miR-516b-5p|0|-3|19M|18C0 0.3333333333333333 270365-1_3 -hsa-miR-516b-5p|0|0|22M|10A11 1.0 270366-1_3;270366-1_3;270366-1_3 +hsa-miR-512-3p|0|1|23M|21C0C0|AAGTGCTGTCATAGCTGAGGTAG 1.0 334943-1_2;334943-1_2 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT 0.3333333333333333 270396-1_3 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA 0.5 270401-1_2 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT 0.3333333333333333 270396-1_3 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA 0.5 270401-1_2 +hsa-miR-512-3p|0|1|23M|22C0|AAGTGCTGTCATAGCTGAGGTCT 0.3333333333333333 270396-1_3 +hsa-miR-512-3p|0|1|23M|3T18C0|AAGAGCTGTCATAGCTGAGGTCT 1.0 673650-1_2;673650-1_2 +hsa-miR-512-5p|1|-1|21M|21|ACTCAGCCTTGAGGGCACTTT 2.0 150819-2_3;150819-2_3;150819-2_3 +hsa-miR-512-5p|1|-2|20M|20|ACTCAGCCTTGAGGGCACTT 1.0 270402-1_3;270402-1_3;270402-1_3 +hsa-miR-512-5p|1|0|22M|22|ACTCAGCCTTGAGGGCACTTTC 1.0 752875-1_3;752875-1_3;752875-1_3 +hsa-miR-515-3p|0|-1|21M|21|GAGTGCCTTCTTTTGGAGCGT 1.0 369314-1_3;369314-1_3;369314-1_3 +hsa-miR-516a-5p|0|-1|22M|22|TTCTCGAGGAAAGAAGCACTTT 6.0 54840-6_3;54840-6_3;54840-6_3 +hsa-miR-516a-5p|1|-1|21M|21|TCTCGAGGAAAGAAGCACTTT 1.0 423555-1_3;423555-1_3;423555-1_3 +hsa-miR-516b-5p|0|-3|19M|18C|ATCTGGAGGTAAGAAGCAA 0.6666666666666666 270365-1_3;270365-1_3 +hsa-miR-516b-5p|0|-3|19M|18C0|ATCTGGAGGTAAGAAGCAA 0.3333333333333333 270365-1_3 +hsa-miR-516b-5p|0|0|22M|10A11|ATCTGGAGGTCAGAAGCACTTT 1.0 270366-1_3;270366-1_3;270366-1_3 hsa-miR-516b-5p 3.0 86082-3_3;86082-3_3;86082-3_3 -hsa-miR-517-5p|-1|0|23M|22T 0.6000000000000001 270359-1_5;270359-1_5;270359-1_5 -hsa-miR-517-5p|-1|0|23M|22T0 0.4 270359-1_5;270359-1_5 -hsa-miR-517-5p|4|2|6M1D13M|0T5^G13 1.0 752904-1_3;752904-1_3;752904-1_3 -hsa-miR-517-5p|4|2|6M1D13M|6^G9C3 3.0 105051-3_3;105051-3_3;105051-3_3 -hsa-miR-517a-3p|0|-1|21M|21 1.3333333333333333 120530-2_3;120530-2_3 +hsa-miR-517-5p|-1|0|23M|22T|CCCTCTAGATGGAAGCACTGTCA 0.6000000000000001 270359-1_5;270359-1_5;270359-1_5 +hsa-miR-517-5p|-1|0|23M|22T0|CCCTCTAGATGGAAGCACTGTCA 0.4 270359-1_5;270359-1_5 +hsa-miR-517-5p|4|2|6M1D13M|0T5^G13|GAGATGAAGCACTGTCTGT 1.0 752904-1_3;752904-1_3;752904-1_3 +hsa-miR-517-5p|4|2|6M1D13M|6^G9C3|TAGATGAAGCACTGTATGT 3.0 105051-3_3;105051-3_3;105051-3_3 +hsa-miR-517a-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG 1.3333333333333333 120530-2_3;120530-2_3 hsa-miR-517a-3p 2.6666666666666665 67957-4_3;67957-4_3 -hsa-miR-517b-3p|0|-1|21M|21 0.6666666666666666 120530-2_3 +hsa-miR-517b-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG 0.6666666666666666 120530-2_3 hsa-miR-517b-3p 1.3333333333333333 67957-4_3 hsa-miR-518b 1.0 447402-1_1 -hsa-miR-518c-5p|1|-1|21M|21 1.0 270377-1_1 -hsa-miR-518c-5p|1|-2|20M|19C 1.0 751085-1_1 -hsa-miR-518c-5p|1|0|22M|22 1.0 270378-1_1 -hsa-miR-518d-5p|0|-1|21M|20T 0.2222222222222222 120527-2_9 -hsa-miR-518d-5p|0|-1|21M|20T0 0.2222222222222222 120527-2_9 -hsa-miR-518d-5p|0|-1|21M|21 0.6666666666666666 95680-3_9;95680-3_9 -hsa-miR-518d-5p|0|-1|21M|3T16T0 0.2 270379-1_5 -hsa-miR-518d-5p|0|-2|20M|20 0.4444444444444444 139675-2_9;139675-2_9 -hsa-miR-518d-5p|0|-3|19M|19 0.2222222222222222 531738-1_9;531738-1_9 +hsa-miR-518c-5p|1|-1|21M|21|CTCTGGAGGGAAGCACTTTCT 1.0 270377-1_1 +hsa-miR-518c-5p|1|-2|20M|19C|CTCTGGAGGGAAGCACTTTA 1.0 751085-1_1 +hsa-miR-518c-5p|1|0|22M|22|CTCTGGAGGGAAGCACTTTCTG 1.0 270378-1_1 +hsa-miR-518d-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 120527-2_9 +hsa-miR-518d-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 120527-2_9 +hsa-miR-518d-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.6666666666666666 95680-3_9;95680-3_9 +hsa-miR-518d-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 270379-1_5 +hsa-miR-518d-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC 0.4444444444444444 139675-2_9;139675-2_9 +hsa-miR-518d-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT 0.2222222222222222 531738-1_9;531738-1_9 hsa-miR-518d-5p 0.2857142857142857 270381-1_7;270381-1_7 hsa-miR-518e-3p 1.0 270360-1_1 -hsa-miR-518e-5p|0|-1|21M|19C0T0 0.16666666666666666 676180-1_6 -hsa-miR-518e-5p|0|-1|21M|21 2.1818181818181817 18915-24_11 -hsa-miR-518e-5p|0|-2|20M|19C 0.09090909090909091 270361-1_11 -hsa-miR-518e-5p|0|-3|19M|19 0.09090909090909091 630277-1_11 +hsa-miR-518e-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 676180-1_6 +hsa-miR-518e-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 2.1818181818181817 18915-24_11 +hsa-miR-518e-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 270361-1_11 +hsa-miR-518e-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.09090909090909091 630277-1_11 hsa-miR-518e-5p 0.36363636363636365 67687-4_11 -hsa-miR-518e-5p|0|1|23M|23 0.2727272727272727 84523-3_11 -hsa-miR-518f-5p|0|-1|21M|20T 0.2222222222222222 120527-2_9 -hsa-miR-518f-5p|0|-1|21M|21 0.3333333333333333 95680-3_9 -hsa-miR-518f-5p|0|-1|21M|3T16T0 0.2 270379-1_5 -hsa-miR-518f-5p|0|-2|20M|20 0.2222222222222222 139675-2_9 -hsa-miR-518f-5p|0|-3|19M|19 0.1111111111111111 531738-1_9 +hsa-miR-518e-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.2727272727272727 84523-3_11 +hsa-miR-518f-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 120527-2_9 +hsa-miR-518f-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.3333333333333333 95680-3_9 +hsa-miR-518f-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 270379-1_5 +hsa-miR-518f-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC 0.2222222222222222 139675-2_9 +hsa-miR-518f-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT 0.1111111111111111 531738-1_9 hsa-miR-518f-5p 1.0 347693-1_1 -hsa-miR-519a-3p|0|0|22M|3G18 1.0 270348-1_3;270348-1_3;270348-1_3 -hsa-miR-519a-5p|-1|-1|22M|21T 1.0 270357-1_1 -hsa-miR-519a-5p|-1|-1|22M|22 5.0 58870-5_1 -hsa-miR-519a-5p|-1|-3|20M|20 1.0 270354-1_1 -hsa-miR-519a-5p|0|-1|21M|19C0T0 0.16666666666666666 676180-1_6 -hsa-miR-519a-5p|0|-1|21M|21 4.363636363636363 18915-24_11;18915-24_11 -hsa-miR-519a-5p|0|-2|20M|19C 0.09090909090909091 270361-1_11 -hsa-miR-519a-5p|0|-2|20M|19C0 0.09090909090909091 270361-1_11 -hsa-miR-519a-5p|0|-3|19M|19 0.18181818181818182 630277-1_11;630277-1_11 +hsa-miR-519a-3p|0|0|22M|3G18|AAATTGCATCCTTTTAGAGTGT 1.0 270348-1_3;270348-1_3;270348-1_3 +hsa-miR-519a-5p|-1|-1|22M|21T|ACTCTAGAGGGAAGCGCTTTCA 1.0 270357-1_1 +hsa-miR-519a-5p|-1|-1|22M|22|ACTCTAGAGGGAAGCGCTTTCT 5.0 58870-5_1 +hsa-miR-519a-5p|-1|-3|20M|20|ACTCTAGAGGGAAGCGCTTT 1.0 270354-1_1 +hsa-miR-519a-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 676180-1_6 +hsa-miR-519a-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 18915-24_11;18915-24_11 +hsa-miR-519a-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 270361-1_11 +hsa-miR-519a-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 270361-1_11 +hsa-miR-519a-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 630277-1_11;630277-1_11 hsa-miR-519a-5p 0.7272727272727273 67687-4_11;67687-4_11 -hsa-miR-519a-5p|0|1|23M|23 0.5454545454545454 84523-3_11;84523-3_11 -hsa-miR-519b-5p|0|-1|21M|19C0T0 0.16666666666666666 676180-1_6 -hsa-miR-519b-5p|0|-1|21M|21 4.363636363636363 18915-24_11;18915-24_11 -hsa-miR-519b-5p|0|-2|20M|19C 0.09090909090909091 270361-1_11 -hsa-miR-519b-5p|0|-2|20M|19C0 0.09090909090909091 270361-1_11 -hsa-miR-519b-5p|0|-3|19M|19 0.18181818181818182 630277-1_11;630277-1_11 +hsa-miR-519a-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 84523-3_11;84523-3_11 +hsa-miR-519b-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 676180-1_6 +hsa-miR-519b-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 18915-24_11;18915-24_11 +hsa-miR-519b-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 270361-1_11 +hsa-miR-519b-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 270361-1_11 +hsa-miR-519b-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 630277-1_11;630277-1_11 hsa-miR-519b-5p 0.7272727272727273 67687-4_11;67687-4_11 -hsa-miR-519b-5p|0|1|23M|23 0.5454545454545454 84523-3_11;84523-3_11 -hsa-miR-519c-5p|0|-1|21M|19C0T0 0.16666666666666666 676180-1_6 -hsa-miR-519c-5p|0|-1|21M|21 4.363636363636363 18915-24_11;18915-24_11 -hsa-miR-519c-5p|0|-2|20M|19C 0.09090909090909091 270361-1_11 -hsa-miR-519c-5p|0|-2|20M|19C0 0.09090909090909091 270361-1_11 -hsa-miR-519c-5p|0|-3|19M|19 0.18181818181818182 630277-1_11;630277-1_11 +hsa-miR-519b-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 84523-3_11;84523-3_11 +hsa-miR-519c-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 676180-1_6 +hsa-miR-519c-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 18915-24_11;18915-24_11 +hsa-miR-519c-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 270361-1_11 +hsa-miR-519c-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 270361-1_11 +hsa-miR-519c-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 630277-1_11;630277-1_11 hsa-miR-519c-5p 0.7272727272727273 67687-4_11;67687-4_11 -hsa-miR-519c-5p|0|1|23M|23 0.5454545454545454 84523-3_11;84523-3_11 -hsa-miR-519d-3p|0|-1|21M|21 1.0 270371-1_1 -hsa-miR-519d-3p|0|-2|20M|20 2.0 153079-2_1 +hsa-miR-519c-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 84523-3_11;84523-3_11 +hsa-miR-519d-3p|0|-1|21M|21|CAAAGTGCCTCCCTTTAGAGT 1.0 270371-1_1 +hsa-miR-519d-3p|0|-2|20M|20|CAAAGTGCCTCCCTTTAGAG 2.0 153079-2_1 hsa-miR-520a-3p 4.0 67829-4_1 -hsa-miR-520a-3p|0|0|22M|3G18 1.0 655140-1_1 -hsa-miR-520a-3p|0|1|23M|22T 1.0 485300-1_1 -hsa-miR-520a-5p|0|0|21M|19C0T0 1.0 729311-1_1 -hsa-miR-520a-5p|0|0|21M|20T 1.0 720817-1_1 +hsa-miR-520a-3p|0|0|22M|3G18|AAAGTGCTTCCCTTTGGACTGT 1.0 655140-1_1 +hsa-miR-520a-3p|0|1|23M|22T|AAAGTGCTTCCCTTTGGACTGTA 1.0 485300-1_1 +hsa-miR-520a-5p|0|0|21M|19C0T0|CTCCAGAGGGAAGTACTTTGA 1.0 729311-1_1 +hsa-miR-520a-5p|0|0|21M|20T|CTCCAGAGGGAAGTACTTTCG 1.0 720817-1_1 hsa-miR-520a-5p 2.0 120535-2_1 -hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1 1.0 228043-1_1 -hsa-miR-520a-5p|0|1|19M1I3M|19C0T1 1.0 609803-1_1 -hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0 3.0 101076-3_1 -hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0 2.0 127441-2_1 -hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0 3.0 103161-3_1 -hsa-miR-520a-5p|0|2|23M|19C0T1T0 1.0 478794-1_1 -hsa-miR-520b-3p|-1|-1|21M|21 0.4 744127-1_5;744127-1_5 -hsa-miR-520b-3p|0|1|22M|22 0.6666666666666666 120532-2_3 -hsa-miR-520c-3p|-1|-2|21M|21 0.4 744127-1_5;744127-1_5 +hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1|CTCCAGAGGGAAGTACTTTAG 1.0 228043-1_1 +hsa-miR-520a-5p|0|1|19M1I3M|19C0T1|CTCCAGAGGGAAGTACTTTGAAG 1.0 609803-1_1 +hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0|CTCCAGAGGGAAGTACTTTAGA 3.0 101076-3_1 +hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0|CTCCAGAGGGAAGTACTTTTAA 2.0 127441-2_1 +hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0|CTCCAGAGGGAAGTACTTTCGA 3.0 103161-3_1 +hsa-miR-520a-5p|0|2|23M|19C0T1T0|CTCCAGAGGGAAGTACTTTAAGA 1.0 478794-1_1 +hsa-miR-520b-3p|-1|-1|21M|21|GAAAGTGCTTCCTTTTAGAGG 0.4 744127-1_5;744127-1_5 +hsa-miR-520b-3p|0|1|22M|22|AAAGTGCTTCCTTTTAGAGGGT 0.6666666666666666 120532-2_3 +hsa-miR-520c-3p|-1|-2|21M|21|GAAAGTGCTTCCTTTTAGAGG 0.4 744127-1_5;744127-1_5 hsa-miR-520c-3p 1.3333333333333333 120532-2_3;120532-2_3 -hsa-miR-520c-5p|0|-1|21M|20T 0.2222222222222222 120527-2_9 -hsa-miR-520c-5p|0|-1|21M|20T0 0.2222222222222222 120527-2_9 -hsa-miR-520c-5p|0|-1|21M|21 0.6666666666666666 95680-3_9;95680-3_9 -hsa-miR-520c-5p|0|-1|21M|3T16T0 0.2 270379-1_5 -hsa-miR-520c-5p|0|-2|20M|20 0.4444444444444444 139675-2_9;139675-2_9 -hsa-miR-520c-5p|0|-3|19M|19 0.2222222222222222 531738-1_9;531738-1_9 +hsa-miR-520c-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 120527-2_9 +hsa-miR-520c-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 120527-2_9 +hsa-miR-520c-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.6666666666666666 95680-3_9;95680-3_9 +hsa-miR-520c-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 270379-1_5 +hsa-miR-520c-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC 0.4444444444444444 139675-2_9;139675-2_9 +hsa-miR-520c-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT 0.2222222222222222 531738-1_9;531738-1_9 hsa-miR-520c-5p 0.2857142857142857 270381-1_7;270381-1_7 hsa-miR-520e-3p 1.0 361022-1_1 -hsa-miR-520e-5p|3|-3|7M1I9M|2G13 1.0 772976-1_1 -hsa-miR-520g-3p|1|-2|21M|21 0.3333333333333333 270368-1_3 -hsa-miR-520g-3p|1|0|23M|23 1.0 270369-1_1 -hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8 1.0 138559-2_2 -hsa-miR-520h|1|0|21M|21 0.6666666666666666 270368-1_3;270368-1_3 -hsa-miR-522-3p|0|0|22M|1A20 1.0 270358-1_1 -hsa-miR-522-5p|0|-1|21M|19C0T0 0.16666666666666666 676180-1_6 -hsa-miR-522-5p|0|-1|21M|21 4.363636363636363 18915-24_11;18915-24_11 -hsa-miR-522-5p|0|-2|20M|19C 0.09090909090909091 270361-1_11 -hsa-miR-522-5p|0|-2|20M|19C0 0.09090909090909091 270361-1_11 -hsa-miR-522-5p|0|-3|19M|19 0.18181818181818182 630277-1_11;630277-1_11 +hsa-miR-520e-5p|3|-3|7M1I9M|2G13|AAAATGGGAAGCAGTTT 1.0 772976-1_1 +hsa-miR-520g-3p|1|-2|21M|21|CAAAGTGCTTCCCTTTAGAGT 0.3333333333333333 270368-1_3 +hsa-miR-520g-3p|1|0|23M|23|CAAAGTGCTTCCCTTTAGAGTGT 1.0 270369-1_1 +hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8|CCCTCTAGAGGAGCCTGTTCTGT 1.0 138559-2_2 +hsa-miR-520h|1|0|21M|21|CAAAGTGCTTCCCTTTAGAGT 0.6666666666666666 270368-1_3;270368-1_3 +hsa-miR-522-3p|0|0|22M|1A20|AGAATGGTTCCCTTTAGAGTGT 1.0 270358-1_1 +hsa-miR-522-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 676180-1_6 +hsa-miR-522-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 18915-24_11;18915-24_11 +hsa-miR-522-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 270361-1_11 +hsa-miR-522-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 270361-1_11 +hsa-miR-522-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 630277-1_11;630277-1_11 hsa-miR-522-5p 0.7272727272727273 67687-4_11;67687-4_11 -hsa-miR-522-5p|0|1|23M|23 0.5454545454545454 84523-3_11;84523-3_11 -hsa-miR-523-5p|0|-1|21M|19C0T0 0.16666666666666666 676180-1_6 -hsa-miR-523-5p|0|-1|21M|21 4.363636363636363 18915-24_11;18915-24_11 -hsa-miR-523-5p|0|-2|20M|19C 0.09090909090909091 270361-1_11 -hsa-miR-523-5p|0|-2|20M|19C0 0.09090909090909091 270361-1_11 -hsa-miR-523-5p|0|-3|19M|19 0.18181818181818182 630277-1_11;630277-1_11 +hsa-miR-522-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 84523-3_11;84523-3_11 +hsa-miR-523-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 676180-1_6 +hsa-miR-523-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 18915-24_11;18915-24_11 +hsa-miR-523-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 270361-1_11 +hsa-miR-523-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 270361-1_11 +hsa-miR-523-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 630277-1_11;630277-1_11 hsa-miR-523-5p 0.7272727272727273 67687-4_11;67687-4_11 -hsa-miR-523-5p|0|1|23M|23 0.5454545454545454 84523-3_11;84523-3_11 -hsa-miR-524-5p|0|-1|21M|21 1.0 270375-1_1 -hsa-miR-524-5p|0|-2|20M|20 1.0 270376-1_1 -hsa-miR-525-5p|0|-1|20M|20 5.0 57516-5_1 +hsa-miR-523-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 84523-3_11;84523-3_11 +hsa-miR-524-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 1.0 270375-1_1 +hsa-miR-524-5p|0|-2|20M|20|CTACAAAGGGAAGCACTTTC 1.0 270376-1_1 +hsa-miR-525-5p|0|-1|20M|20|CTCCAGAGGGATGCACTTTC 5.0 57516-5_1 hsa-miR-525-5p 3.0 102026-3_1 -hsa-miR-526a-5p|0|-1|21M|20T 0.4444444444444444 120527-2_9;120527-2_9 -hsa-miR-526a-5p|0|-1|21M|20T0 0.4444444444444444 120527-2_9;120527-2_9 -hsa-miR-526a-5p|0|-1|21M|21 1.3333333333333333 95680-3_9;95680-3_9;95680-3_9;95680-3_9 -hsa-miR-526a-5p|0|-1|21M|3T16T0 0.4 270379-1_5;270379-1_5 -hsa-miR-526a-5p|0|-2|20M|20 0.8888888888888888 139675-2_9;139675-2_9;139675-2_9;139675-2_9 -hsa-miR-526a-5p|0|-3|19M|19 0.4444444444444444 531738-1_9;531738-1_9;531738-1_9;531738-1_9 +hsa-miR-526a-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.4444444444444444 120527-2_9;120527-2_9 +hsa-miR-526a-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.4444444444444444 120527-2_9;120527-2_9 +hsa-miR-526a-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 1.3333333333333333 95680-3_9;95680-3_9;95680-3_9;95680-3_9 +hsa-miR-526a-5p|0|-1|21M|3T16T0|CTCTAGAGGGAAGCACTTTCA 0.4 270379-1_5;270379-1_5 +hsa-miR-526a-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC 0.8888888888888888 139675-2_9;139675-2_9;139675-2_9;139675-2_9 +hsa-miR-526a-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT 0.4444444444444444 531738-1_9;531738-1_9;531738-1_9;531738-1_9 hsa-miR-526a-5p 0.42857142857142855 270381-1_7;270381-1_7;270381-1_7 diff --git a/scripts/tests/files/uncollapsed_iso_mirna_quantification b/scripts/tests/files/uncollapsed_iso_mirna_quantification new file mode 100644 index 0000000..366d6a4 --- /dev/null +++ b/scripts/tests/files/uncollapsed_iso_mirna_quantification @@ -0,0 +1,160 @@ +hsa-miR-1323|0|-1|21M|21|TCAAAACTGAGGGGCATTTTC 1.0 +hsa-miR-1323 1.0 +hsa-miR-371a-5p 1.0 +hsa-miR-371a-5p|0|3|23M|17A3T0C0|ACTCAAACTGTGGGGGCACTTAG 1.0 +hsa-miR-371b-3p|0|-1|22M|22|GCACTCAAACTGTGGGGGCACT 1.0 +hsa-miR-372-3p|0|-1|22M|0A0A2T17|CGAGCGCTGCGACATTTGAGCG 1.0 +hsa-miR-372-3p|0|-1|22M|22|AAAGTGCTGCGACATTTGAGCG 1.0 +hsa-miR-372-3p|0|-1|22M|3G18|AAATTGCTGCGACATTTGAGCG 1.0 +hsa-miR-372-3p|0|0|23M|1A20T0|AGAGTGCTGCGACATTTGAGCGA 1.0 +hsa-miR-372-3p|0|0|23M|22T|AAAGTGCTGCGACATTTGAGCGA 1.0 +hsa-miR-372-3p 1.0 +hsa-miR-372-3p|0|0|23M|3G19|AAATTGCTGCGACATTTGAGCGT 1.0 +hsa-miR-372-3p|1|0|21M1I1M|23|AAGTGCTGCGACATTTGAGCGAT 1.0 +hsa-miR-372-3p|1|0|22M|22|AAGTGCTGCGACATTTGAGCGT 1.0 +hsa-miR-372-3p|1|0|4M1I18M|2G19|AACTTGCTGCGACATTTGAGCGT 1.0 +hsa-miR-373-3p 1.0 +hsa-miR-498-5p 1.0 +hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4|GAACAGTGCTGTGATAACTGA 1.0 +hsa-miR-512-3p|0|-1|21M|20T|AAGTGCTGTCATAGCTGAGGA 0.6666666666666666 +hsa-miR-512-3p|0|-1|21M|20T0|AAGTGCTGTCATAGCTGAGGA 0.3333333333333333 +hsa-miR-512-3p|0|-1|21M|21|AAGTGCTGTCATAGCTGAGGT 1.0 +hsa-miR-512-3p|0|-1|21M|7G13|AAGTGCTTTCATAGCTGAGGT 1.0 +hsa-miR-512-3p|0|-2|20M|12A7|AAGTGCTGTCATCGCTGAGG 1.0 +hsa-miR-512-3p|0|-2|20M|20|AAGTGCTGTCATAGCTGAGG 1.0 +hsa-miR-512-3p|0|0|22M|12A9|AAGTGCTGTCATCGCTGAGGTC 1.0 +hsa-miR-512-3p|0|0|22M|17A4|AAGTGCTGTCATAGCTGCGGTC 1.0 +hsa-miR-512-3p|0|0|22M|21C|AAGTGCTGTCATAGCTGCGGTT 0.6666666666666666 +hsa-miR-512-3p|0|0|22M|21C0|AAGTGCTGTCATAGCTGCGGTT 0.3333333333333333 +hsa-miR-512-3p 1.0 +hsa-miR-512-3p|0|1|23M|21C0C0|AAGTGCTGTCATAGCTGAGGTAG 1.0 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT 0.3333333333333333 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA 0.5 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT 0.3333333333333333 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA 0.5 +hsa-miR-512-3p|0|1|23M|22C0|AAGTGCTGTCATAGCTGAGGTCT 0.3333333333333333 +hsa-miR-512-3p|0|1|23M|3T18C0|AAGAGCTGTCATAGCTGAGGTCT 1.0 +hsa-miR-512-5p|1|-1|21M|21|ACTCAGCCTTGAGGGCACTTT 1.0 +hsa-miR-512-5p|1|-2|20M|20|ACTCAGCCTTGAGGGCACTT 1.0 +hsa-miR-512-5p|1|0|22M|22|ACTCAGCCTTGAGGGCACTTTC 1.0 +hsa-miR-515-3p|0|-1|21M|21|GAGTGCCTTCTTTTGGAGCGT 1.0 +hsa-miR-516a-5p|0|-1|22M|22|TTCTCGAGGAAAGAAGCACTTT 1.0 +hsa-miR-516a-5p|1|-1|21M|21|TCTCGAGGAAAGAAGCACTTT 1.0 +hsa-miR-516b-5p|0|-3|19M|18C|ATCTGGAGGTAAGAAGCAA 0.6666666666666666 +hsa-miR-516b-5p|0|-3|19M|18C0|ATCTGGAGGTAAGAAGCAA 0.3333333333333333 +hsa-miR-516b-5p|0|0|22M|10A11|ATCTGGAGGTCAGAAGCACTTT 1.0 +hsa-miR-516b-5p 1.0 +hsa-miR-517-5p|-1|0|23M|22T|CCCTCTAGATGGAAGCACTGTCA 0.6000000000000001 +hsa-miR-517-5p|-1|0|23M|22T0|CCCTCTAGATGGAAGCACTGTCA 0.4 +hsa-miR-517-5p|4|2|6M1D13M|0T5^G13|GAGATGAAGCACTGTCTGT 1.0 +hsa-miR-517-5p|4|2|6M1D13M|6^G9C3|TAGATGAAGCACTGTATGT 1.0 +hsa-miR-517a-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG 0.6666666666666666 +hsa-miR-517a-3p 0.6666666666666666 +hsa-miR-517b-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG 0.3333333333333333 +hsa-miR-517b-3p 0.3333333333333333 +hsa-miR-518b 1.0 +hsa-miR-518c-5p|1|-1|21M|21|CTCTGGAGGGAAGCACTTTCT 1.0 +hsa-miR-518c-5p|1|-2|20M|19C|CTCTGGAGGGAAGCACTTTA 1.0 +hsa-miR-518c-5p|1|0|22M|22|CTCTGGAGGGAAGCACTTTCTG 1.0 +hsa-miR-518d-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.1111111111111111 +hsa-miR-518d-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.1111111111111111 +hsa-miR-518d-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.2222222222222222 +hsa-miR-518d-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 +hsa-miR-518d-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC 0.2222222222222222 +hsa-miR-518d-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT 0.2222222222222222 +hsa-miR-518d-5p 0.2857142857142857 +hsa-miR-518e-3p 1.0 +hsa-miR-518e-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 +hsa-miR-518e-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 0.09090909090909091 +hsa-miR-518e-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-518e-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.09090909090909091 +hsa-miR-518e-5p 0.09090909090909091 +hsa-miR-518e-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.09090909090909091 +hsa-miR-518f-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.1111111111111111 +hsa-miR-518f-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.1111111111111111 +hsa-miR-518f-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 +hsa-miR-518f-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC 0.1111111111111111 +hsa-miR-518f-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT 0.1111111111111111 +hsa-miR-518f-5p 1.0 +hsa-miR-519a-3p|0|0|22M|3G18|AAATTGCATCCTTTTAGAGTGT 1.0 +hsa-miR-519a-5p|-1|-1|22M|21T|ACTCTAGAGGGAAGCGCTTTCA 1.0 +hsa-miR-519a-5p|-1|-1|22M|22|ACTCTAGAGGGAAGCGCTTTCT 1.0 +hsa-miR-519a-5p|-1|-3|20M|20|ACTCTAGAGGGAAGCGCTTT 1.0 +hsa-miR-519a-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 +hsa-miR-519a-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 0.18181818181818182 +hsa-miR-519a-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-519a-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-519a-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 +hsa-miR-519a-5p 0.18181818181818182 +hsa-miR-519a-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.18181818181818182 +hsa-miR-519b-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 +hsa-miR-519b-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 0.18181818181818182 +hsa-miR-519b-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-519b-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-519b-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 +hsa-miR-519b-5p 0.18181818181818182 +hsa-miR-519b-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.18181818181818182 +hsa-miR-519c-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 +hsa-miR-519c-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 0.18181818181818182 +hsa-miR-519c-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-519c-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-519c-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 +hsa-miR-519c-5p 0.18181818181818182 +hsa-miR-519c-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.18181818181818182 +hsa-miR-519d-3p|0|-1|21M|21|CAAAGTGCCTCCCTTTAGAGT 1.0 +hsa-miR-519d-3p|0|-2|20M|20|CAAAGTGCCTCCCTTTAGAG 1.0 +hsa-miR-520a-3p 1.0 +hsa-miR-520a-3p|0|0|22M|3G18|AAAGTGCTTCCCTTTGGACTGT 1.0 +hsa-miR-520a-3p|0|1|23M|22T|AAAGTGCTTCCCTTTGGACTGTA 1.0 +hsa-miR-520a-5p|0|0|21M|19C0T0|CTCCAGAGGGAAGTACTTTGA 1.0 +hsa-miR-520a-5p|0|0|21M|20T|CTCCAGAGGGAAGTACTTTCG 1.0 +hsa-miR-520a-5p 1.0 +hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1|CTCCAGAGGGAAGTACTTTAG 1.0 +hsa-miR-520a-5p|0|1|19M1I3M|19C0T1|CTCCAGAGGGAAGTACTTTGAAG 1.0 +hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0|CTCCAGAGGGAAGTACTTTAGA 1.0 +hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0|CTCCAGAGGGAAGTACTTTTAA 1.0 +hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0|CTCCAGAGGGAAGTACTTTCGA 1.0 +hsa-miR-520a-5p|0|2|23M|19C0T1T0|CTCCAGAGGGAAGTACTTTAAGA 1.0 +hsa-miR-520b-3p|-1|-1|21M|21|GAAAGTGCTTCCTTTTAGAGG 0.4 +hsa-miR-520b-3p|0|1|22M|22|AAAGTGCTTCCTTTTAGAGGGT 0.3333333333333333 +hsa-miR-520c-3p|-1|-2|21M|21|GAAAGTGCTTCCTTTTAGAGG 0.4 +hsa-miR-520c-3p 0.6666666666666666 +hsa-miR-520c-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.1111111111111111 +hsa-miR-520c-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.1111111111111111 +hsa-miR-520c-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.2222222222222222 +hsa-miR-520c-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 +hsa-miR-520c-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC 0.2222222222222222 +hsa-miR-520c-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT 0.2222222222222222 +hsa-miR-520c-5p 0.2857142857142857 +hsa-miR-520e-3p 1.0 +hsa-miR-520e-5p|3|-3|7M1I9M|2G13|AAAATGGGAAGCAGTTT 1.0 +hsa-miR-520g-3p|1|-2|21M|21|CAAAGTGCTTCCCTTTAGAGT 0.3333333333333333 +hsa-miR-520g-3p|1|0|23M|23|CAAAGTGCTTCCCTTTAGAGTGT 1.0 +hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8|CCCTCTAGAGGAGCCTGTTCTGT 0.5 +hsa-miR-520h|1|0|21M|21|CAAAGTGCTTCCCTTTAGAGT 0.6666666666666666 +hsa-miR-522-3p|0|0|22M|1A20|AGAATGGTTCCCTTTAGAGTGT 1.0 +hsa-miR-522-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 +hsa-miR-522-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 0.18181818181818182 +hsa-miR-522-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-522-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-522-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 +hsa-miR-522-5p 0.18181818181818182 +hsa-miR-522-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.18181818181818182 +hsa-miR-523-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 +hsa-miR-523-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 0.18181818181818182 +hsa-miR-523-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-523-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-523-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 +hsa-miR-523-5p 0.18181818181818182 +hsa-miR-523-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.18181818181818182 +hsa-miR-524-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 1.0 +hsa-miR-524-5p|0|-2|20M|20|CTACAAAGGGAAGCACTTTC 1.0 +hsa-miR-525-5p|0|-1|20M|20|CTCCAGAGGGATGCACTTTC 1.0 +hsa-miR-525-5p 1.0 +hsa-miR-526a-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 +hsa-miR-526a-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 +hsa-miR-526a-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.4444444444444444 +hsa-miR-526a-5p|0|-1|21M|3T16T0|CTCTAGAGGGAAGCACTTTCA 0.4 +hsa-miR-526a-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC 0.4444444444444444 +hsa-miR-526a-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT 0.4444444444444444 +hsa-miR-526a-5p 0.42857142857142855 diff --git a/scripts/tests/files/uncollapsed_missing_nh_iso_mirna_quantification b/scripts/tests/files/uncollapsed_missing_nh_iso_mirna_quantification index 1fbfec5..4fce0fb 100644 --- a/scripts/tests/files/uncollapsed_missing_nh_iso_mirna_quantification +++ b/scripts/tests/files/uncollapsed_missing_nh_iso_mirna_quantification @@ -1,157 +1,160 @@ -hsa-miR-1323|0|-1|21M|21 1.0 1 +hsa-miR-1323|0|-1|21M|21|TCAAAACTGAGGGGCATTTTC 1.0 1 hsa-miR-1323 1.0 1 hsa-miR-371a-5p 1.0 1 -hsa-miR-371a-5p|0|3|23M|17A3T0C0 1.0 1 -hsa-miR-371b-3p|0|-1|22M|22 1.0 1 -hsa-miR-372-3p|0|-1|22M|0A0A2T17 1.0 1 -hsa-miR-372-3p|0|-1|22M|22 1.0 1 -hsa-miR-372-3p|0|-1|22M|3G18 1.0 1 -hsa-miR-372-3p|0|0|23M|1A20T0 1.0 1 -hsa-miR-372-3p|0|0|23M|22T 1.0 1 +hsa-miR-371a-5p|0|3|23M|17A3T0C0|ACTCAAACTGTGGGGGCACTTAG 1.0 1 +hsa-miR-371b-3p|0|-1|22M|22|GCACTCAAACTGTGGGGGCACT 1.0 1 +hsa-miR-372-3p|0|-1|22M|0A0A2T17|CGAGCGCTGCGACATTTGAGCG 1.0 1 +hsa-miR-372-3p|0|-1|22M|22|AAAGTGCTGCGACATTTGAGCG 1.0 1 +hsa-miR-372-3p|0|-1|22M|3G18|AAATTGCTGCGACATTTGAGCG 1.0 1 +hsa-miR-372-3p|0|0|23M|1A20T0|AGAGTGCTGCGACATTTGAGCGA 1.0 1 +hsa-miR-372-3p|0|0|23M|22T|AAAGTGCTGCGACATTTGAGCGA 1.0 1 hsa-miR-372-3p 1.0 1 -hsa-miR-372-3p|0|0|23M|3G19 1.0 1 -hsa-miR-372-3p|1|0|21M1I1M|23 1.0 1 -hsa-miR-372-3p|1|0|22M|22 1.0 1 -hsa-miR-372-3p|1|0|4M1I18M|2G19 1.0 1 +hsa-miR-372-3p|0|0|23M|3G19|AAATTGCTGCGACATTTGAGCGT 1.0 1 +hsa-miR-372-3p|1|0|21M1I1M|23|AAGTGCTGCGACATTTGAGCGAT 1.0 1 +hsa-miR-372-3p|1|0|22M|22|AAGTGCTGCGACATTTGAGCGT 1.0 1 +hsa-miR-372-3p|1|0|4M1I18M|2G19|AACTTGCTGCGACATTTGAGCGT 1.0 1 hsa-miR-373-3p 1.0 1 hsa-miR-498-5p 1.0 1 -hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4 1.0 2 -hsa-miR-512-3p|0|-1|21M|20T 0.6666666666666666 2 -hsa-miR-512-3p|0|-1|21M|20T0 0.3333333333333333 1 -hsa-miR-512-3p|0|-1|21M|21 1.0 3 -hsa-miR-512-3p|0|-1|21M|7G13 1.6666666666666665 3 -hsa-miR-512-3p|0|-2|20M|12A7 1.0 3 -hsa-miR-512-3p|0|-2|20M|20 1.6666666666666665 3 -hsa-miR-512-3p|0|0|22M|12A9 1.0 3 -hsa-miR-512-3p|0|0|22M|17A4 1.6666666666666665 3 -hsa-miR-512-3p|0|0|22M|21C 1.3333333333333333 2 -hsa-miR-512-3p|0|0|22M|21C0 0.3333333333333333 1 -hsa-miR-512-3p 1.0 3 -hsa-miR-512-3p|0|1|23M|21C0C0 1.0 2 -hsa-miR-512-3p|0|1|23M|22C 1.6666666666666665 4 -hsa-miR-512-3p|0|1|23M|22C0 0.3333333333333333 1 -hsa-miR-512-3p|0|1|23M|3T18C0 1.0 2 -hsa-miR-512-5p|1|-1|21M|21 1.0 3 -hsa-miR-512-5p|1|-2|20M|20 1.0 3 -hsa-miR-512-5p|1|0|22M|22 1.0 3 -hsa-miR-515-3p|0|-1|21M|21 1.0 3 -hsa-miR-516a-5p|0|-1|22M|22 1.0 3 -hsa-miR-516a-5p|1|-1|21M|21 2.333333333333333 3 -hsa-miR-516b-5p|0|-3|19M|18C 0.6666666666666666 2 -hsa-miR-516b-5p|0|-3|19M|18C0 0.3333333333333333 1 -hsa-miR-516b-5p|0|0|22M|10A11 1.0 3 -hsa-miR-516b-5p 1.0 3 -hsa-miR-517-5p|-1|0|23M|22T 3.0 3 -hsa-miR-517-5p|-1|0|23M|22T0 0.4 2 -hsa-miR-517-5p|4|2|6M1D13M|0T5^G13 1.0 3 -hsa-miR-517-5p|4|2|6M1D13M|6^G9C3 1.0 3 -hsa-miR-517a-3p|0|-1|21M|21 0.6666666666666666 2 -hsa-miR-517a-3p 0.6666666666666666 2 -hsa-miR-517b-3p|0|-1|21M|21 0.3333333333333333 1 -hsa-miR-517b-3p 0.3333333333333333 1 +hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4|GAACAGTGCTGTGATAACTGA 1.0 2 +hsa-miR-512-3p|0|-1|21M|20T|AAGTGCTGTCATAGCTGAGGA 2.0 2 +hsa-miR-512-3p|0|-1|21M|20T0|AAGTGCTGTCATAGCTGAGGA 1.0 1 +hsa-miR-512-3p|0|-1|21M|21|AAGTGCTGTCATAGCTGAGGT 3.0 3 +hsa-miR-512-3p|0|-1|21M|7G13|AAGTGCTTTCATAGCTGAGGT 3.0 3 +hsa-miR-512-3p|0|-2|20M|12A7|AAGTGCTGTCATCGCTGAGG 3.0 3 +hsa-miR-512-3p|0|-2|20M|20|AAGTGCTGTCATAGCTGAGG 3.0 3 +hsa-miR-512-3p|0|0|22M|12A9|AAGTGCTGTCATCGCTGAGGTC 3.0 3 +hsa-miR-512-3p|0|0|22M|17A4|AAGTGCTGTCATAGCTGCGGTC 3.0 3 +hsa-miR-512-3p|0|0|22M|21C|AAGTGCTGTCATAGCTGCGGTT 2.0 2 +hsa-miR-512-3p|0|0|22M|21C0|AAGTGCTGTCATAGCTGCGGTT 1.0 1 +hsa-miR-512-3p 3.0 3 +hsa-miR-512-3p|0|1|23M|21C0C0|AAGTGCTGTCATAGCTGAGGTAG 1.0 2 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT 1.0 1 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA 0.5 1 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT 1.0 1 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA 0.5 1 +hsa-miR-512-3p|0|1|23M|22C0|AAGTGCTGTCATAGCTGAGGTCT 1.0 1 +hsa-miR-512-3p|0|1|23M|3T18C0|AAGAGCTGTCATAGCTGAGGTCT 1.0 2 +hsa-miR-512-5p|1|-1|21M|21|ACTCAGCCTTGAGGGCACTTT 3.0 3 +hsa-miR-512-5p|1|-2|20M|20|ACTCAGCCTTGAGGGCACTT 3.0 3 +hsa-miR-512-5p|1|0|22M|22|ACTCAGCCTTGAGGGCACTTTC 3.0 3 +hsa-miR-515-3p|0|-1|21M|21|GAGTGCCTTCTTTTGGAGCGT 3.0 3 +hsa-miR-516a-5p|0|-1|22M|22|TTCTCGAGGAAAGAAGCACTTT 3.0 3 +hsa-miR-516a-5p|1|-1|21M|21|TCTCGAGGAAAGAAGCACTTT 3.0 3 +hsa-miR-516b-5p|0|-3|19M|18C|ATCTGGAGGTAAGAAGCAA 2.0 2 +hsa-miR-516b-5p|0|-3|19M|18C0|ATCTGGAGGTAAGAAGCAA 1.0 1 +hsa-miR-516b-5p|0|0|22M|10A11|ATCTGGAGGTCAGAAGCACTTT 3.0 3 +hsa-miR-516b-5p 3.0 3 +hsa-miR-517-5p|-1|0|23M|22T|CCCTCTAGATGGAAGCACTGTCA 0.6000000000000001 3 +hsa-miR-517-5p|-1|0|23M|22T0|CCCTCTAGATGGAAGCACTGTCA 0.4 2 +hsa-miR-517-5p|4|2|6M1D13M|0T5^G13|GAGATGAAGCACTGTCTGT 3.0 3 +hsa-miR-517-5p|4|2|6M1D13M|6^G9C3|TAGATGAAGCACTGTATGT 3.0 3 +hsa-miR-517a-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG 2.0 2 +hsa-miR-517a-3p 2.0 2 +hsa-miR-517b-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG 1.0 1 +hsa-miR-517b-3p 1.0 1 hsa-miR-518b 1.0 1 -hsa-miR-518c-5p|1|-1|21M|21 1.0 1 -hsa-miR-518c-5p|1|-2|20M|19C 1.0 1 -hsa-miR-518c-5p|1|0|22M|22 1.0 1 -hsa-miR-518d-5p|0|-1|21M|20T 0.1111111111111111 1 -hsa-miR-518d-5p|0|-1|21M|20T0 0.1111111111111111 1 -hsa-miR-518d-5p|0|-1|21M|21 1.1111111111111112 2 -hsa-miR-518d-5p|0|-1|21M|3T16T0 0.2 1 -hsa-miR-518d-5p|0|-2|20M|20 1.1111111111111112 2 -hsa-miR-518d-5p|0|-3|19M|19 0.2222222222222222 2 -hsa-miR-518d-5p 1.1428571428571428 2 +hsa-miR-518c-5p|1|-1|21M|21|CTCTGGAGGGAAGCACTTTCT 1.0 1 +hsa-miR-518c-5p|1|-2|20M|19C|CTCTGGAGGGAAGCACTTTA 1.0 1 +hsa-miR-518c-5p|1|0|22M|22|CTCTGGAGGGAAGCACTTTCTG 1.0 1 +hsa-miR-518d-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.1111111111111111 1 +hsa-miR-518d-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.1111111111111111 1 +hsa-miR-518d-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.2222222222222222 2 +hsa-miR-518d-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 1 +hsa-miR-518d-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC 0.2222222222222222 2 +hsa-miR-518d-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT 0.2222222222222222 2 +hsa-miR-518d-5p 0.2857142857142857 2 hsa-miR-518e-3p 1.0 1 -hsa-miR-518e-5p|0|-1|21M|19C0T0 0.16666666666666666 1 -hsa-miR-518e-5p|0|-1|21M|21 1.0 1 -hsa-miR-518e-5p|0|-2|20M|19C 0.09090909090909091 1 -hsa-miR-518e-5p|0|-3|19M|19 0.09090909090909091 1 +hsa-miR-518e-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 1 +hsa-miR-518e-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 0.09090909090909091 1 +hsa-miR-518e-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 1 +hsa-miR-518e-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.09090909090909091 1 hsa-miR-518e-5p 0.09090909090909091 1 -hsa-miR-518e-5p|0|1|23M|23 0.09090909090909091 1 -hsa-miR-518f-5p|0|-1|21M|20T 0.1111111111111111 1 -hsa-miR-518f-5p|0|-1|21M|21 0.1111111111111111 1 -hsa-miR-518f-5p|0|-1|21M|3T16T0 0.2 1 -hsa-miR-518f-5p|0|-2|20M|20 0.1111111111111111 1 -hsa-miR-518f-5p|0|-3|19M|19 0.1111111111111111 1 +hsa-miR-518e-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.09090909090909091 1 +hsa-miR-518f-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.1111111111111111 1 +hsa-miR-518f-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.1111111111111111 1 +hsa-miR-518f-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 1 +hsa-miR-518f-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC 0.1111111111111111 1 +hsa-miR-518f-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT 0.1111111111111111 1 hsa-miR-518f-5p 1.0 1 -hsa-miR-519a-3p|0|0|22M|3G18 1.6666666666666665 3 -hsa-miR-519a-5p|-1|-1|22M|21T 1.0 1 -hsa-miR-519a-5p|-1|-1|22M|22 1.0 1 -hsa-miR-519a-5p|-1|-3|20M|20 1.0 1 -hsa-miR-519a-5p|0|-1|21M|19C0T0 0.16666666666666666 1 -hsa-miR-519a-5p|0|-1|21M|21 1.0909090909090908 2 -hsa-miR-519a-5p|0|-2|20M|19C 0.09090909090909091 1 -hsa-miR-519a-5p|0|-2|20M|19C0 0.09090909090909091 1 -hsa-miR-519a-5p|0|-3|19M|19 0.18181818181818182 2 +hsa-miR-519a-3p|0|0|22M|3G18|AAATTGCATCCTTTTAGAGTGT 3.0 3 +hsa-miR-519a-5p|-1|-1|22M|21T|ACTCTAGAGGGAAGCGCTTTCA 1.0 1 +hsa-miR-519a-5p|-1|-1|22M|22|ACTCTAGAGGGAAGCGCTTTCT 1.0 1 +hsa-miR-519a-5p|-1|-3|20M|20|ACTCTAGAGGGAAGCGCTTT 1.0 1 +hsa-miR-519a-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 1 +hsa-miR-519a-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 0.18181818181818182 2 +hsa-miR-519a-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 1 +hsa-miR-519a-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 1 +hsa-miR-519a-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 2 hsa-miR-519a-5p 0.18181818181818182 2 -hsa-miR-519a-5p|0|1|23M|23 0.18181818181818182 2 -hsa-miR-519b-5p|0|-1|21M|19C0T0 0.16666666666666666 1 -hsa-miR-519b-5p|0|-1|21M|21 0.18181818181818182 2 -hsa-miR-519b-5p|0|-2|20M|19C 1.0 1 -hsa-miR-519b-5p|0|-2|20M|19C0 0.09090909090909091 1 -hsa-miR-519b-5p|0|-3|19M|19 0.18181818181818182 2 +hsa-miR-519a-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.18181818181818182 2 +hsa-miR-519b-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 1 +hsa-miR-519b-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 0.18181818181818182 2 +hsa-miR-519b-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 1 +hsa-miR-519b-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 1 +hsa-miR-519b-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 2 hsa-miR-519b-5p 0.18181818181818182 2 -hsa-miR-519b-5p|0|1|23M|23 0.18181818181818182 2 -hsa-miR-519c-5p|0|-1|21M|19C0T0 0.16666666666666666 1 -hsa-miR-519c-5p|0|-1|21M|21 0.18181818181818182 2 -hsa-miR-519c-5p|0|-2|20M|19C 0.09090909090909091 1 -hsa-miR-519c-5p|0|-2|20M|19C0 0.09090909090909091 1 -hsa-miR-519c-5p|0|-3|19M|19 0.18181818181818182 2 +hsa-miR-519b-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.18181818181818182 2 +hsa-miR-519c-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 1 +hsa-miR-519c-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 0.18181818181818182 2 +hsa-miR-519c-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 1 +hsa-miR-519c-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 1 +hsa-miR-519c-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 2 hsa-miR-519c-5p 0.18181818181818182 2 -hsa-miR-519c-5p|0|1|23M|23 1.0909090909090908 2 -hsa-miR-519d-3p|0|-1|21M|21 1.0 1 -hsa-miR-519d-3p|0|-2|20M|20 1.0 1 +hsa-miR-519c-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.18181818181818182 2 +hsa-miR-519d-3p|0|-1|21M|21|CAAAGTGCCTCCCTTTAGAGT 1.0 1 +hsa-miR-519d-3p|0|-2|20M|20|CAAAGTGCCTCCCTTTAGAG 1.0 1 hsa-miR-520a-3p 1.0 1 -hsa-miR-520a-3p|0|0|22M|3G18 1.0 1 -hsa-miR-520a-3p|0|1|23M|22T 1.0 1 -hsa-miR-520a-5p|0|0|21M|19C0T0 1.0 1 -hsa-miR-520a-5p|0|0|21M|20T 1.0 1 +hsa-miR-520a-3p|0|0|22M|3G18|AAAGTGCTTCCCTTTGGACTGT 1.0 1 +hsa-miR-520a-3p|0|1|23M|22T|AAAGTGCTTCCCTTTGGACTGTA 1.0 1 +hsa-miR-520a-5p|0|0|21M|19C0T0|CTCCAGAGGGAAGTACTTTGA 1.0 1 +hsa-miR-520a-5p|0|0|21M|20T|CTCCAGAGGGAAGTACTTTCG 1.0 1 hsa-miR-520a-5p 1.0 1 -hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1 1.0 1 -hsa-miR-520a-5p|0|1|19M1I3M|19C0T1 1.0 1 -hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0 1.0 1 -hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0 1.0 1 -hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0 1.0 1 -hsa-miR-520a-5p|0|2|23M|19C0T1T0 1.0 1 -hsa-miR-520b-3p|-1|-1|21M|21 0.4 2 -hsa-miR-520b-3p|0|1|22M|22 0.3333333333333333 1 -hsa-miR-520c-3p|-1|-2|21M|21 0.4 2 -hsa-miR-520c-3p 0.6666666666666666 2 -hsa-miR-520c-5p|0|-1|21M|20T 0.1111111111111111 1 -hsa-miR-520c-5p|0|-1|21M|20T0 0.1111111111111111 1 -hsa-miR-520c-5p|0|-1|21M|21 0.2222222222222222 2 -hsa-miR-520c-5p|0|-1|21M|3T16T0 0.2 1 -hsa-miR-520c-5p|0|-2|20M|20 0.2222222222222222 2 -hsa-miR-520c-5p|0|-3|19M|19 1.1111111111111112 2 -hsa-miR-520c-5p 1.1428571428571428 2 +hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1|CTCCAGAGGGAAGTACTTTAG 1.0 1 +hsa-miR-520a-5p|0|1|19M1I3M|19C0T1|CTCCAGAGGGAAGTACTTTGAAG 1.0 1 +hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0|CTCCAGAGGGAAGTACTTTAGA 1.0 1 +hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0|CTCCAGAGGGAAGTACTTTTAA 1.0 1 +hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0|CTCCAGAGGGAAGTACTTTCGA 1.0 1 +hsa-miR-520a-5p|0|2|23M|19C0T1T0|CTCCAGAGGGAAGTACTTTAAGA 1.0 1 +hsa-miR-520b-3p|-1|-1|21M|21|GAAAGTGCTTCCTTTTAGAGG 0.4 2 +hsa-miR-520b-3p|0|1|22M|22|AAAGTGCTTCCTTTTAGAGGGT 1.0 1 +hsa-miR-520c-3p|-1|-2|21M|21|GAAAGTGCTTCCTTTTAGAGG 0.4 2 +hsa-miR-520c-3p 2.0 2 +hsa-miR-520c-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.1111111111111111 1 +hsa-miR-520c-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.1111111111111111 1 +hsa-miR-520c-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.2222222222222222 2 +hsa-miR-520c-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 1 +hsa-miR-520c-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC 0.2222222222222222 2 +hsa-miR-520c-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT 0.2222222222222222 2 +hsa-miR-520c-5p 0.2857142857142857 2 hsa-miR-520e-3p 1.0 1 -hsa-miR-520e-5p|3|-3|7M1I9M|2G13 1.0 1 -hsa-miR-520g-3p|1|-2|21M|21 0.3333333333333333 1 -hsa-miR-520g-3p|1|0|23M|23 1.0 1 -hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8 0.5 1 -hsa-miR-520h|1|0|21M|21 0.6666666666666666 2 -hsa-miR-522-3p|0|0|22M|1A20 1.0 1 -hsa-miR-522-5p|0|-1|21M|19C0T0 0.16666666666666666 1 -hsa-miR-522-5p|0|-1|21M|21 0.18181818181818182 2 -hsa-miR-522-5p|0|-2|20M|19C 0.09090909090909091 1 -hsa-miR-522-5p|0|-2|20M|19C0 0.09090909090909091 1 -hsa-miR-522-5p|0|-3|19M|19 0.18181818181818182 2 +hsa-miR-520e-5p|3|-3|7M1I9M|2G13|AAAATGGGAAGCAGTTT 1.0 1 +hsa-miR-520g-3p|1|-2|21M|21|CAAAGTGCTTCCCTTTAGAGT 1.0 1 +hsa-miR-520g-3p|1|0|23M|23|CAAAGTGCTTCCCTTTAGAGTGT 1.0 1 +hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8|CCCTCTAGAGGAGCCTGTTCTGT 0.5 1 +hsa-miR-520h|1|0|21M|21|CAAAGTGCTTCCCTTTAGAGT 2.0 2 +hsa-miR-522-3p|0|0|22M|1A20|AGAATGGTTCCCTTTAGAGTGT 1.0 1 +hsa-miR-522-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 1 +hsa-miR-522-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 0.18181818181818182 2 +hsa-miR-522-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 1 +hsa-miR-522-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 1 +hsa-miR-522-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 2 hsa-miR-522-5p 0.18181818181818182 2 -hsa-miR-522-5p|0|1|23M|23 0.18181818181818182 2 -hsa-miR-523-5p|0|-1|21M|19C0T0 0.16666666666666666 1 -hsa-miR-523-5p|0|-1|21M|21 0.18181818181818182 2 -hsa-miR-523-5p|0|-2|20M|19C 0.09090909090909091 1 -hsa-miR-523-5p|0|-2|20M|19C0 0.09090909090909091 1 -hsa-miR-523-5p|0|-3|19M|19 1.0909090909090908 2 +hsa-miR-522-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.18181818181818182 2 +hsa-miR-523-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 1 +hsa-miR-523-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 0.18181818181818182 2 +hsa-miR-523-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 1 +hsa-miR-523-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 1 +hsa-miR-523-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 2 hsa-miR-523-5p 0.18181818181818182 2 -hsa-miR-523-5p|0|1|23M|23 0.18181818181818182 2 -hsa-miR-524-5p|0|-1|21M|21 1.0 1 -hsa-miR-524-5p|0|-2|20M|20 1.0 1 -hsa-miR-525-5p|0|-1|20M|20 1.0 1 +hsa-miR-523-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.18181818181818182 2 +hsa-miR-524-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 1.0 1 +hsa-miR-524-5p|0|-2|20M|20|CTACAAAGGGAAGCACTTTC 1.0 1 +hsa-miR-525-5p|0|-1|20M|20|CTCCAGAGGGATGCACTTTC 1.0 1 hsa-miR-525-5p 1.0 1 -hsa-miR-526a-5p|0|-1|21M|20T 0.2222222222222222 2 -hsa-miR-526a-5p|0|-1|21M|20T0 2.0 2 -hsa-miR-526a-5p|0|-1|21M|21 0.4444444444444444 4 -hsa-miR-526a-5p|0|-1|21M|3T16T0 0.4 2 -hsa-miR-526a-5p|0|-2|20M|20 0.4444444444444444 4 -hsa-miR-526a-5p|0|-3|19M|19 1.3333333333333335 4 -hsa-miR-526a-5p 2.142857142857143 3 +hsa-miR-526a-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 2 +hsa-miR-526a-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 2 +hsa-miR-526a-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.4444444444444444 4 +hsa-miR-526a-5p|0|-1|21M|3T16T0|CTCTAGAGGGAAGCACTTTCA 0.4 2 +hsa-miR-526a-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC 0.4444444444444444 4 +hsa-miR-526a-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT 0.4444444444444444 4 +hsa-miR-526a-5p 0.42857142857142855 3 diff --git a/scripts/tests/files/xn_tag_iso_mirna_quantification b/scripts/tests/files/xn_tag_iso_mirna_quantification index 634dfa9..984b6d8 100644 --- a/scripts/tests/files/xn_tag_iso_mirna_quantification +++ b/scripts/tests/files/xn_tag_iso_mirna_quantification @@ -1,157 +1,160 @@ -hsa-miR-1323|0|-1|21M|21 1.0 +hsa-miR-1323|0|-1|21M|21|TCAAAACTGAGGGGCATTTTC 1.0 hsa-miR-1323 1.0 hsa-miR-371a-5p 1.0 -hsa-miR-371a-5p|0|3|23M|17A3T0C0 1.0 -hsa-miR-371b-3p|0|-1|22M|22 2.0 -hsa-miR-372-3p|0|-1|22M|0A0A2T17 1.0 -hsa-miR-372-3p|0|-1|22M|22 4.0 -hsa-miR-372-3p|0|-1|22M|3G18 3.0 -hsa-miR-372-3p|0|0|23M|1A20T0 1.0 -hsa-miR-372-3p|0|0|23M|22T 2.0 +hsa-miR-371a-5p|0|3|23M|17A3T0C0|ACTCAAACTGTGGGGGCACTTAG 1.0 +hsa-miR-371b-3p|0|-1|22M|22|GCACTCAAACTGTGGGGGCACT 2.0 +hsa-miR-372-3p|0|-1|22M|0A0A2T17|CGAGCGCTGCGACATTTGAGCG 1.0 +hsa-miR-372-3p|0|-1|22M|22|AAAGTGCTGCGACATTTGAGCG 4.0 +hsa-miR-372-3p|0|-1|22M|3G18|AAATTGCTGCGACATTTGAGCG 3.0 +hsa-miR-372-3p|0|0|23M|1A20T0|AGAGTGCTGCGACATTTGAGCGA 1.0 +hsa-miR-372-3p|0|0|23M|22T|AAAGTGCTGCGACATTTGAGCGA 2.0 hsa-miR-372-3p 1.0 -hsa-miR-372-3p|0|0|23M|3G19 1.0 -hsa-miR-372-3p|1|0|21M1I1M|23 1.0 -hsa-miR-372-3p|1|0|22M|22 1.0 -hsa-miR-372-3p|1|0|4M1I18M|2G19 1.0 +hsa-miR-372-3p|0|0|23M|3G19|AAATTGCTGCGACATTTGAGCGT 1.0 +hsa-miR-372-3p|1|0|21M1I1M|23|AAGTGCTGCGACATTTGAGCGAT 1.0 +hsa-miR-372-3p|1|0|22M|22|AAGTGCTGCGACATTTGAGCGT 1.0 +hsa-miR-372-3p|1|0|4M1I18M|2G19|AACTTGCTGCGACATTTGAGCGT 1.0 hsa-miR-373-3p 2.0 hsa-miR-498-5p 1.0 -hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4 1.0 -hsa-miR-512-3p|0|-1|21M|20T 0.6666666666666666 -hsa-miR-512-3p|0|-1|21M|20T0 0.3333333333333333 -hsa-miR-512-3p|0|-1|21M|21 4.0 -hsa-miR-512-3p|0|-1|21M|7G13 1.0 -hsa-miR-512-3p|0|-2|20M|12A7 1.0 -hsa-miR-512-3p|0|-2|20M|20 4.0 -hsa-miR-512-3p|0|0|22M|12A9 1.0 -hsa-miR-512-3p|0|0|22M|17A4 1.0 -hsa-miR-512-3p|0|0|22M|21C 2.0 -hsa-miR-512-3p|0|0|22M|21C0 1.0 +hsa-miR-512-3p|-2|-4|3M1I17M|11C3G4|GAACAGTGCTGTGATAACTGA 1.0 +hsa-miR-512-3p|0|-1|21M|20T|AAGTGCTGTCATAGCTGAGGA 0.6666666666666666 +hsa-miR-512-3p|0|-1|21M|20T0|AAGTGCTGTCATAGCTGAGGA 0.3333333333333333 +hsa-miR-512-3p|0|-1|21M|21|AAGTGCTGTCATAGCTGAGGT 4.0 +hsa-miR-512-3p|0|-1|21M|7G13|AAGTGCTTTCATAGCTGAGGT 1.0 +hsa-miR-512-3p|0|-2|20M|12A7|AAGTGCTGTCATCGCTGAGG 1.0 +hsa-miR-512-3p|0|-2|20M|20|AAGTGCTGTCATAGCTGAGG 4.0 +hsa-miR-512-3p|0|0|22M|12A9|AAGTGCTGTCATCGCTGAGGTC 1.0 +hsa-miR-512-3p|0|0|22M|17A4|AAGTGCTGTCATAGCTGCGGTC 1.0 +hsa-miR-512-3p|0|0|22M|21C|AAGTGCTGTCATAGCTGCGGTT 2.0 +hsa-miR-512-3p|0|0|22M|21C0|AAGTGCTGTCATAGCTGCGGTT 1.0 hsa-miR-512-3p 9.0 -hsa-miR-512-3p|0|1|23M|21C0C0 1.0 -hsa-miR-512-3p|0|1|23M|22C 1.6666666666666665 -hsa-miR-512-3p|0|1|23M|22C0 0.3333333333333333 -hsa-miR-512-3p|0|1|23M|3T18C0 1.0 -hsa-miR-512-5p|1|-1|21M|21 2.0 -hsa-miR-512-5p|1|-2|20M|20 1.0 -hsa-miR-512-5p|1|0|22M|22 1.0 -hsa-miR-515-3p|0|-1|21M|21 1.0 -hsa-miR-516a-5p|0|-1|22M|22 6.0 -hsa-miR-516a-5p|1|-1|21M|21 1.0 -hsa-miR-516b-5p|0|-3|19M|18C 0.6666666666666666 -hsa-miR-516b-5p|0|-3|19M|18C0 0.3333333333333333 -hsa-miR-516b-5p|0|0|22M|10A11 1.0 +hsa-miR-512-3p|0|1|23M|21C0C0|AAGTGCTGTCATAGCTGAGGTAG 1.0 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT 0.3333333333333333 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA 0.5 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCT 0.3333333333333333 +hsa-miR-512-3p|0|1|23M|22C|AAGTGCTGTCATAGCTGAGGTCA 0.5 +hsa-miR-512-3p|0|1|23M|22C0|AAGTGCTGTCATAGCTGAGGTCT 0.3333333333333333 +hsa-miR-512-3p|0|1|23M|3T18C0|AAGAGCTGTCATAGCTGAGGTCT 1.0 +hsa-miR-512-5p|1|-1|21M|21|ACTCAGCCTTGAGGGCACTTT 2.0 +hsa-miR-512-5p|1|-2|20M|20|ACTCAGCCTTGAGGGCACTT 1.0 +hsa-miR-512-5p|1|0|22M|22|ACTCAGCCTTGAGGGCACTTTC 1.0 +hsa-miR-515-3p|0|-1|21M|21|GAGTGCCTTCTTTTGGAGCGT 1.0 +hsa-miR-516a-5p|0|-1|22M|22|TTCTCGAGGAAAGAAGCACTTT 6.0 +hsa-miR-516a-5p|1|-1|21M|21|TCTCGAGGAAAGAAGCACTTT 1.0 +hsa-miR-516b-5p|0|-3|19M|18C|ATCTGGAGGTAAGAAGCAA 0.6666666666666666 +hsa-miR-516b-5p|0|-3|19M|18C0|ATCTGGAGGTAAGAAGCAA 0.3333333333333333 +hsa-miR-516b-5p|0|0|22M|10A11|ATCTGGAGGTCAGAAGCACTTT 1.0 hsa-miR-516b-5p 3.0 -hsa-miR-517-5p|-1|0|23M|22T 0.6000000000000001 -hsa-miR-517-5p|-1|0|23M|22T0 0.4 -hsa-miR-517-5p|4|2|6M1D13M|0T5^G13 1.0 -hsa-miR-517-5p|4|2|6M1D13M|6^G9C3 3.0 -hsa-miR-517a-3p|0|-1|21M|21 1.3333333333333333 +hsa-miR-517-5p|-1|0|23M|22T|CCCTCTAGATGGAAGCACTGTCA 0.6000000000000001 +hsa-miR-517-5p|-1|0|23M|22T0|CCCTCTAGATGGAAGCACTGTCA 0.4 +hsa-miR-517-5p|4|2|6M1D13M|0T5^G13|GAGATGAAGCACTGTCTGT 1.0 +hsa-miR-517-5p|4|2|6M1D13M|6^G9C3|TAGATGAAGCACTGTATGT 3.0 +hsa-miR-517a-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG 1.3333333333333333 hsa-miR-517a-3p 2.6666666666666665 -hsa-miR-517b-3p|0|-1|21M|21 0.6666666666666666 +hsa-miR-517b-3p|0|-1|21M|21|ATCGTGCATCCCTTTAGAGTG 0.6666666666666666 hsa-miR-517b-3p 1.3333333333333333 hsa-miR-518b 1.0 -hsa-miR-518c-5p|1|-1|21M|21 1.0 -hsa-miR-518c-5p|1|-2|20M|19C 1.0 -hsa-miR-518c-5p|1|0|22M|22 1.0 -hsa-miR-518d-5p|0|-1|21M|20T 0.2222222222222222 -hsa-miR-518d-5p|0|-1|21M|20T0 0.2222222222222222 -hsa-miR-518d-5p|0|-1|21M|21 0.6666666666666666 -hsa-miR-518d-5p|0|-1|21M|3T16T0 0.2 -hsa-miR-518d-5p|0|-2|20M|20 0.4444444444444444 -hsa-miR-518d-5p|0|-3|19M|19 0.2222222222222222 +hsa-miR-518c-5p|1|-1|21M|21|CTCTGGAGGGAAGCACTTTCT 1.0 +hsa-miR-518c-5p|1|-2|20M|19C|CTCTGGAGGGAAGCACTTTA 1.0 +hsa-miR-518c-5p|1|0|22M|22|CTCTGGAGGGAAGCACTTTCTG 1.0 +hsa-miR-518d-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 +hsa-miR-518d-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 +hsa-miR-518d-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.6666666666666666 +hsa-miR-518d-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 +hsa-miR-518d-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC 0.4444444444444444 +hsa-miR-518d-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT 0.2222222222222222 hsa-miR-518d-5p 0.2857142857142857 hsa-miR-518e-3p 1.0 -hsa-miR-518e-5p|0|-1|21M|19C0T0 0.16666666666666666 -hsa-miR-518e-5p|0|-1|21M|21 2.1818181818181817 -hsa-miR-518e-5p|0|-2|20M|19C 0.09090909090909091 -hsa-miR-518e-5p|0|-3|19M|19 0.09090909090909091 +hsa-miR-518e-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 +hsa-miR-518e-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 2.1818181818181817 +hsa-miR-518e-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-518e-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.09090909090909091 hsa-miR-518e-5p 0.36363636363636365 -hsa-miR-518e-5p|0|1|23M|23 0.2727272727272727 -hsa-miR-518f-5p|0|-1|21M|20T 0.2222222222222222 -hsa-miR-518f-5p|0|-1|21M|21 0.3333333333333333 -hsa-miR-518f-5p|0|-1|21M|3T16T0 0.2 -hsa-miR-518f-5p|0|-2|20M|20 0.2222222222222222 -hsa-miR-518f-5p|0|-3|19M|19 0.1111111111111111 +hsa-miR-518e-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.2727272727272727 +hsa-miR-518f-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 +hsa-miR-518f-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.3333333333333333 +hsa-miR-518f-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 +hsa-miR-518f-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC 0.2222222222222222 +hsa-miR-518f-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT 0.1111111111111111 hsa-miR-518f-5p 1.0 -hsa-miR-519a-3p|0|0|22M|3G18 1.0 -hsa-miR-519a-5p|-1|-1|22M|21T 1.0 -hsa-miR-519a-5p|-1|-1|22M|22 5.0 -hsa-miR-519a-5p|-1|-3|20M|20 1.0 -hsa-miR-519a-5p|0|-1|21M|19C0T0 0.16666666666666666 -hsa-miR-519a-5p|0|-1|21M|21 4.363636363636363 -hsa-miR-519a-5p|0|-2|20M|19C 0.09090909090909091 -hsa-miR-519a-5p|0|-2|20M|19C0 0.09090909090909091 -hsa-miR-519a-5p|0|-3|19M|19 0.18181818181818182 +hsa-miR-519a-3p|0|0|22M|3G18|AAATTGCATCCTTTTAGAGTGT 1.0 +hsa-miR-519a-5p|-1|-1|22M|21T|ACTCTAGAGGGAAGCGCTTTCA 1.0 +hsa-miR-519a-5p|-1|-1|22M|22|ACTCTAGAGGGAAGCGCTTTCT 5.0 +hsa-miR-519a-5p|-1|-3|20M|20|ACTCTAGAGGGAAGCGCTTT 1.0 +hsa-miR-519a-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 +hsa-miR-519a-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 +hsa-miR-519a-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-519a-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-519a-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 hsa-miR-519a-5p 0.7272727272727273 -hsa-miR-519a-5p|0|1|23M|23 0.5454545454545454 -hsa-miR-519b-5p|0|-1|21M|19C0T0 0.16666666666666666 -hsa-miR-519b-5p|0|-1|21M|21 4.363636363636363 -hsa-miR-519b-5p|0|-2|20M|19C 0.09090909090909091 -hsa-miR-519b-5p|0|-2|20M|19C0 0.09090909090909091 -hsa-miR-519b-5p|0|-3|19M|19 0.18181818181818182 +hsa-miR-519a-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 +hsa-miR-519b-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 +hsa-miR-519b-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 +hsa-miR-519b-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-519b-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-519b-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 hsa-miR-519b-5p 0.7272727272727273 -hsa-miR-519b-5p|0|1|23M|23 0.5454545454545454 -hsa-miR-519c-5p|0|-1|21M|19C0T0 0.16666666666666666 -hsa-miR-519c-5p|0|-1|21M|21 4.363636363636363 -hsa-miR-519c-5p|0|-2|20M|19C 0.09090909090909091 -hsa-miR-519c-5p|0|-2|20M|19C0 0.09090909090909091 -hsa-miR-519c-5p|0|-3|19M|19 0.18181818181818182 +hsa-miR-519b-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 +hsa-miR-519c-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 +hsa-miR-519c-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 +hsa-miR-519c-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-519c-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-519c-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 hsa-miR-519c-5p 0.7272727272727273 -hsa-miR-519c-5p|0|1|23M|23 0.5454545454545454 -hsa-miR-519d-3p|0|-1|21M|21 1.0 -hsa-miR-519d-3p|0|-2|20M|20 2.0 +hsa-miR-519c-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 +hsa-miR-519d-3p|0|-1|21M|21|CAAAGTGCCTCCCTTTAGAGT 1.0 +hsa-miR-519d-3p|0|-2|20M|20|CAAAGTGCCTCCCTTTAGAG 2.0 hsa-miR-520a-3p 4.0 -hsa-miR-520a-3p|0|0|22M|3G18 1.0 -hsa-miR-520a-3p|0|1|23M|22T 1.0 -hsa-miR-520a-5p|0|0|21M|19C0T0 1.0 -hsa-miR-520a-5p|0|0|21M|20T 1.0 +hsa-miR-520a-3p|0|0|22M|3G18|AAAGTGCTTCCCTTTGGACTGT 1.0 +hsa-miR-520a-3p|0|1|23M|22T|AAAGTGCTTCCCTTTGGACTGTA 1.0 +hsa-miR-520a-5p|0|0|21M|19C0T0|CTCCAGAGGGAAGTACTTTGA 1.0 +hsa-miR-520a-5p|0|0|21M|20T|CTCCAGAGGGAAGTACTTTCG 1.0 hsa-miR-520a-5p 2.0 -hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1 1.0 -hsa-miR-520a-5p|0|1|19M1I3M|19C0T1 1.0 -hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0 3.0 -hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0 2.0 -hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0 3.0 -hsa-miR-520a-5p|0|2|23M|19C0T1T0 1.0 -hsa-miR-520b-3p|-1|-1|21M|21 0.4 -hsa-miR-520b-3p|0|1|22M|22 0.6666666666666666 -hsa-miR-520c-3p|-1|-2|21M|21 0.4 +hsa-miR-520a-5p|0|1|19M1D2M|19^C0T1|CTCCAGAGGGAAGTACTTTAG 1.0 +hsa-miR-520a-5p|0|1|19M1I3M|19C0T1|CTCCAGAGGGAAGTACTTTGAAG 1.0 +hsa-miR-520a-5p|0|2|19M1D3M|19^C0T1T0|CTCCAGAGGGAAGTACTTTAGA 3.0 +hsa-miR-520a-5p|0|2|19M1D3M|19^C1G0T0|CTCCAGAGGGAAGTACTTTTAA 2.0 +hsa-miR-520a-5p|0|2|20M1D2M|20^T1T0|CTCCAGAGGGAAGTACTTTCGA 3.0 +hsa-miR-520a-5p|0|2|23M|19C0T1T0|CTCCAGAGGGAAGTACTTTAAGA 1.0 +hsa-miR-520b-3p|-1|-1|21M|21|GAAAGTGCTTCCTTTTAGAGG 0.4 +hsa-miR-520b-3p|0|1|22M|22|AAAGTGCTTCCTTTTAGAGGGT 0.6666666666666666 +hsa-miR-520c-3p|-1|-2|21M|21|GAAAGTGCTTCCTTTTAGAGG 0.4 hsa-miR-520c-3p 1.3333333333333333 -hsa-miR-520c-5p|0|-1|21M|20T 0.2222222222222222 -hsa-miR-520c-5p|0|-1|21M|20T0 0.2222222222222222 -hsa-miR-520c-5p|0|-1|21M|21 0.6666666666666666 -hsa-miR-520c-5p|0|-1|21M|3T16T0 0.2 -hsa-miR-520c-5p|0|-2|20M|20 0.4444444444444444 -hsa-miR-520c-5p|0|-3|19M|19 0.2222222222222222 +hsa-miR-520c-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 +hsa-miR-520c-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.2222222222222222 +hsa-miR-520c-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 0.6666666666666666 +hsa-miR-520c-5p|0|-1|21M|3T16T0|CTCGAGAGGGAAGCACTTTCA 0.2 +hsa-miR-520c-5p|0|-2|20M|20|CTCGAGAGGGAAGCACTTTC 0.4444444444444444 +hsa-miR-520c-5p|0|-3|19M|19|CTCGAGAGGGAAGCACTTT 0.2222222222222222 hsa-miR-520c-5p 0.2857142857142857 hsa-miR-520e-3p 1.0 -hsa-miR-520e-5p|3|-3|7M1I9M|2G13 1.0 -hsa-miR-520g-3p|1|-2|21M|21 0.3333333333333333 -hsa-miR-520g-3p|1|0|23M|23 1.0 -hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8 1.0 -hsa-miR-520h|1|0|21M|21 0.6666666666666666 -hsa-miR-522-3p|0|0|22M|1A20 1.0 -hsa-miR-522-5p|0|-1|21M|19C0T0 0.16666666666666666 -hsa-miR-522-5p|0|-1|21M|21 4.363636363636363 -hsa-miR-522-5p|0|-2|20M|19C 0.09090909090909091 -hsa-miR-522-5p|0|-2|20M|19C0 0.09090909090909091 -hsa-miR-522-5p|0|-3|19M|19 0.18181818181818182 +hsa-miR-520e-5p|3|-3|7M1I9M|2G13|AAAATGGGAAGCAGTTT 1.0 +hsa-miR-520g-3p|1|-2|21M|21|CAAAGTGCTTCCCTTTAGAGT 0.3333333333333333 +hsa-miR-520g-3p|1|0|23M|23|CAAAGTGCTTCCCTTTAGAGTGT 1.0 +hsa-miR-520g-5p|-3|-2|12M1D2M1D2M1I6M|12^A2^A8|CCCTCTAGAGGAGCCTGTTCTGT 1.0 +hsa-miR-520h|1|0|21M|21|CAAAGTGCTTCCCTTTAGAGT 0.6666666666666666 +hsa-miR-522-3p|0|0|22M|1A20|AGAATGGTTCCCTTTAGAGTGT 1.0 +hsa-miR-522-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 +hsa-miR-522-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 +hsa-miR-522-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-522-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-522-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 hsa-miR-522-5p 0.7272727272727273 -hsa-miR-522-5p|0|1|23M|23 0.5454545454545454 -hsa-miR-523-5p|0|-1|21M|19C0T0 0.16666666666666666 -hsa-miR-523-5p|0|-1|21M|21 4.363636363636363 -hsa-miR-523-5p|0|-2|20M|19C 0.09090909090909091 -hsa-miR-523-5p|0|-2|20M|19C0 0.09090909090909091 -hsa-miR-523-5p|0|-3|19M|19 0.18181818181818182 +hsa-miR-522-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 +hsa-miR-523-5p|0|-1|21M|19C0T0|CTCTAGAGGGAAGCGCTTTAA 0.16666666666666666 +hsa-miR-523-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 4.363636363636363 +hsa-miR-523-5p|0|-2|20M|19C|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-523-5p|0|-2|20M|19C0|CTCTAGAGGGAAGCGCTTTA 0.09090909090909091 +hsa-miR-523-5p|0|-3|19M|19|CTCTAGAGGGAAGCGCTTT 0.18181818181818182 hsa-miR-523-5p 0.7272727272727273 -hsa-miR-523-5p|0|1|23M|23 0.5454545454545454 -hsa-miR-524-5p|0|-1|21M|21 1.0 -hsa-miR-524-5p|0|-2|20M|20 1.0 -hsa-miR-525-5p|0|-1|20M|20 5.0 +hsa-miR-523-5p|0|1|23M|23|CTCTAGAGGGAAGCGCTTTCTGT 0.5454545454545454 +hsa-miR-524-5p|0|-1|21M|21|CTCTAGAGGGAAGCGCTTTCT 1.0 +hsa-miR-524-5p|0|-2|20M|20|CTACAAAGGGAAGCACTTTC 1.0 +hsa-miR-525-5p|0|-1|20M|20|CTCCAGAGGGATGCACTTTC 5.0 hsa-miR-525-5p 3.0 -hsa-miR-526a-5p|0|-1|21M|20T 0.4444444444444444 -hsa-miR-526a-5p|0|-1|21M|20T0 0.4444444444444444 -hsa-miR-526a-5p|0|-1|21M|21 1.3333333333333333 -hsa-miR-526a-5p|0|-1|21M|3T16T0 0.4 -hsa-miR-526a-5p|0|-2|20M|20 0.8888888888888888 -hsa-miR-526a-5p|0|-3|19M|19 0.4444444444444444 +hsa-miR-526a-5p|0|-1|21M|20T|CTCTAGAGGGAAGCACTTTCA 0.4444444444444444 +hsa-miR-526a-5p|0|-1|21M|20T0|CTCTAGAGGGAAGCACTTTCA 0.4444444444444444 +hsa-miR-526a-5p|0|-1|21M|21|CTCTAGAGGGAAGCACTTTCT 1.3333333333333333 +hsa-miR-526a-5p|0|-1|21M|3T16T0|CTCTAGAGGGAAGCACTTTCA 0.4 +hsa-miR-526a-5p|0|-2|20M|20|CTCTAGAGGGAAGCACTTTC 0.8888888888888888 +hsa-miR-526a-5p|0|-3|19M|19|CTCTAGAGGGAAGCACTTT 0.4444444444444444 hsa-miR-526a-5p 0.42857142857142855 diff --git a/scripts/tests/test_iso_name_tagging.py b/scripts/tests/test_iso_name_tagging.py index ef1881c..8d4e28b 100644 --- a/scripts/tests/test_iso_name_tagging.py +++ b/scripts/tests/test_iso_name_tagging.py @@ -4,9 +4,16 @@ from pathlib import Path import sys +import pysam import pytest -from ..iso_name_tagging import main, parse_arguments +from ..iso_name_tagging import ( + attributes_dictionary, + get_tags, + main, + parse_arguments, + parse_intersect_output, +) @pytest.fixture @@ -48,6 +55,246 @@ def bed_sam_id(): return bed_file, sam_file, output_file +# pylint: disable=line-too-long +@pytest.fixture +def attributes_gtf_gff(): + """Attributes strings in GFF3 and GTF format.""" + gff_attributes = "ID=MIMAT0019022;Alias=MIMAT0019022;Name=hsa-miR-4488;Derives_from=MI0016849" # noqa: E501 + gtf_attributes = 'ID "MIMAT0019022";Alias "MIMAT0019022";Name "hsa-miR-4488";Derives_from "MI0016849"' # noqa: E501 + dict_attributes = { + "id": "MIMAT0019022", + "alias": "MIMAT0019022", + "name": "hsa-miR-4488", + "derives_from": "MI0016849", + } + + return gff_attributes, gtf_attributes, dict_attributes + + +# pylint: enable=line-too-long + + +@pytest.fixture +def alns(): + """Create sample AlignedSegment objects.""" + aln1 = pysam.AlignedSegment() + aln1.cigarstring = "21M" + aln1.query_name = "8-2_1" + aln1.query_sequence = "GAAGGCGCTTCCCTTTGGAGT" + aln1.reference_id = 19 + aln1.reference_start = 44414 + aln1.set_tag("MD", 21) + aln1.set_tag("NH", 2) + aln1.set_tag("HI", 1) + + aln2 = pysam.AlignedSegment() + aln2.cigarstring = "21M" + aln2.query_name = "8-2_1" + aln2.query_sequence = "GAAGGCGCTTCCCTTTGGAGT" + aln2.reference_id = 19 + aln2.reference_start = 44409 + aln2.set_tag("MD", 21) + aln2.set_tag("NH", 2) + aln2.set_tag("HI", 1) + + return aln1, aln2 + + +@pytest.fixture +def intersect_dicts(): + """Dictionaries of the intersect output BED files.""" + inter_name = { + "22-1_1": [("hsa-miR-1323", 5338, 5359)], + "41-1_1": [("hsa-miR-1323", 5338, 5359)], + "44-1_1": [("hsa-miR-1323", 5338, 5359)], + "46-1_1": [("hsa-miR-1323", 5338, 5359)], + "48-1_1": [("hsa-miR-1323", 5338, 5359)], + "66-1_1": [("hsa-miR-1323", 5338, 5359)], + "92-1_1": [("hsa-miR-1323", 5338, 5359)], + "14-1_1": [("hsa-miR-498-5p", 7590, 7612)], + "15-1_1": [("hsa-miR-498-5p", 7590, 7612)], + "20-1_1": [("hsa-miR-498-5p", 7590, 7612)], + "34-1_1": [("hsa-miR-498-5p", 7590, 7612)], + "39-1_1": [("hsa-miR-498-5p", 7590, 7612)], + "54-1_1": [("hsa-miR-498-5p", 7590, 7612)], + "26-1_1": [("hsa-miR-498-3p", 7626, 7648)], + "31-1_1": [("hsa-miR-498-3p", 7626, 7648)], + "32-1_1": [("hsa-miR-498-3p", 7626, 7648)], + "49-1_1": [("hsa-miR-498-3p", 7626, 7648)], + "57-1_1": [("hsa-miR-498-3p", 7626, 7648)], + "71-1_1": [("hsa-miR-498-3p", 7626, 7648)], + "13-1_1": [("hsa-miR-524-5p", 44377, 44398)], + "33-1_1": [("hsa-miR-524-5p", 44377, 44398)], + "56-1_1": [("hsa-miR-524-5p", 44377, 44398)], + "59-1_1": [("hsa-miR-524-5p", 44377, 44398)], + "72-1_1": [("hsa-miR-524-5p", 44377, 44398)], + "94-1_1": [("hsa-miR-524-5p", 44377, 44398)], + "8-2_1": [("hsa-miR-524-3p", 44414, 44434)], + "24-1_1": [("hsa-miR-524-3p", 44414, 44434)], + "58-1_1": [("hsa-miR-524-3p", 44414, 44434)], + "90-1_1": [("hsa-miR-524-3p", 44414, 44434)], + "95-1_1": [("hsa-miR-524-3p", 44414, 44434)], + } + inter_id_alias = { + "22-1_1": [("MIMAT0005795", 5338, 5359)], + "41-1_1": [("MIMAT0005795", 5338, 5359)], + "44-1_1": [("MIMAT0005795", 5338, 5359)], + "46-1_1": [("MIMAT0005795", 5338, 5359)], + "48-1_1": [("MIMAT0005795", 5338, 5359)], + "66-1_1": [("MIMAT0005795", 5338, 5359)], + "92-1_1": [("MIMAT0005795", 5338, 5359)], + "14-1_1": [("MIMAT0002824", 7590, 7612)], + "15-1_1": [("MIMAT0002824", 7590, 7612)], + "20-1_1": [("MIMAT0002824", 7590, 7612)], + "34-1_1": [("MIMAT0002824", 7590, 7612)], + "39-1_1": [("MIMAT0002824", 7590, 7612)], + "54-1_1": [("MIMAT0002824", 7590, 7612)], + "26-1_1": [("MIMAT0037323", 7626, 7648)], + "31-1_1": [("MIMAT0037323", 7626, 7648)], + "32-1_1": [("MIMAT0037323", 7626, 7648)], + "49-1_1": [("MIMAT0037323", 7626, 7648)], + "57-1_1": [("MIMAT0037323", 7626, 7648)], + "71-1_1": [("MIMAT0037323", 7626, 7648)], + "13-1_1": [("MIMAT0002849", 44377, 44398)], + "33-1_1": [("MIMAT0002849", 44377, 44398)], + "56-1_1": [("MIMAT0002849", 44377, 44398)], + "59-1_1": [("MIMAT0002849", 44377, 44398)], + "72-1_1": [("MIMAT0002849", 44377, 44398)], + "94-1_1": [("MIMAT0002849", 44377, 44398)], + "8-2_1": [("MIMAT0002850", 44414, 44434)], + "24-1_1": [("MIMAT0002850", 44414, 44434)], + "58-1_1": [("MIMAT0002850", 44414, 44434)], + "90-1_1": [("MIMAT0002850", 44414, 44434)], + "95-1_1": [("MIMAT0002850", 44414, 44434)], + } + inter_extension = { + "22-1_1": [("hsa-miR-1323", 5341, 5356)], + "41-1_1": [("hsa-miR-1323", 5341, 5356)], + "44-1_1": [("hsa-miR-1323", 5341, 5356)], + "46-1_1": [("hsa-miR-1323", 5341, 5356)], + "48-1_1": [("hsa-miR-1323", 5341, 5356)], + "66-1_1": [("hsa-miR-1323", 5341, 5356)], + "92-1_1": [("hsa-miR-1323", 5341, 5356)], + "14-1_1": [("hsa-miR-498-5p", 7593, 7609)], + "15-1_1": [("hsa-miR-498-5p", 7593, 7609)], + "20-1_1": [("hsa-miR-498-5p", 7593, 7609)], + "34-1_1": [("hsa-miR-498-5p", 7593, 7609)], + "39-1_1": [("hsa-miR-498-5p", 7593, 7609)], + "54-1_1": [("hsa-miR-498-5p", 7593, 7609)], + "26-1_1": [("hsa-miR-498-3p", 7629, 7645)], + "31-1_1": [("hsa-miR-498-3p", 7629, 7645)], + "32-1_1": [("hsa-miR-498-3p", 7629, 7645)], + "49-1_1": [("hsa-miR-498-3p", 7629, 7645)], + "57-1_1": [("hsa-miR-498-3p", 7629, 7645)], + "71-1_1": [("hsa-miR-498-3p", 7629, 7645)], + "13-1_1": [("hsa-miR-524-5p", 44380, 44395)], + "33-1_1": [("hsa-miR-524-5p", 44380, 44395)], + "56-1_1": [("hsa-miR-524-5p", 44380, 44395)], + "59-1_1": [("hsa-miR-524-5p", 44380, 44395)], + "72-1_1": [("hsa-miR-524-5p", 44380, 44395)], + "94-1_1": [("hsa-miR-524-5p", 44380, 44395)], + "8-2_1": [("hsa-miR-524-3p", 44417, 44431)], + "24-1_1": [("hsa-miR-524-3p", 44417, 44431)], + "58-1_1": [("hsa-miR-524-3p", 44417, 44431)], + "90-1_1": [("hsa-miR-524-3p", 44417, 44431)], + "95-1_1": [("hsa-miR-524-3p", 44417, 44431)], + } + + return inter_name, inter_id_alias, inter_extension + + +class TestAttributesDictionary: + """Test 'attributes_dictionary()' function.""" + + def test_attributes_dictionary_gff(self, attributes_gtf_gff): + """Test get attributes dictionary from GFF3 attributes string.""" + gff_attr, gtf_attr, dict_attr = attributes_gtf_gff + + assert dict_attr == attributes_dictionary(gff_attr) + + def test_attributes_dictionary_gtf(self, attributes_gtf_gff): + """Test get attributes dictionary from GTF attributes string.""" + gff_attr, gtf_attr, dict_attr = attributes_gtf_gff + + assert dict_attr == attributes_dictionary(gtf_attr) + + +class TestParseIntersectOutput: + """Test 'parse_intersect_output()' function.""" + + def test_parse_intersect_output_empty_bed(self, empty_files): + """Test parse intersect empty output.""" + empty_bed, empty_sam = empty_files + + assert parse_intersect_output(intersect_file=empty_bed) is None + + def test_parse_intersect_output_name_id(self, bed_sam, intersect_dicts): + """Test parse intersect output using 'name' as ID.""" + in_bed, in_sam, out_f = bed_sam + out_name, out_id_alias, out_ext_3 = intersect_dicts + + out_inter = parse_intersect_output(intersect_file=in_bed) + + assert sorted(out_inter.items()) == sorted(out_name.items()) + + def test_parse_intersect_output_alias_id(self, bed_sam, intersect_dicts): + """Test parse intersect output using 'alias' as ID.""" + in_bed, in_sam, out_f = bed_sam + out_name, out_id_alias, out_ext_3 = intersect_dicts + + out_inter = parse_intersect_output(intersect_file=in_bed, ID="alias") + + assert sorted(out_inter.items()) == sorted(out_id_alias.items()) + + def test_parse_intersect_output_id_id(self, bed_sam, intersect_dicts): + """Test parse intersect output using 'id' as ID.""" + in_bed, in_sam, out_f = bed_sam + out_name, out_id_alias, out_ext_3 = intersect_dicts + + out_inter = parse_intersect_output(intersect_file=in_bed, ID="id") + + assert sorted(out_inter.items()) == sorted(out_id_alias.items()) + + def test_parse_intersect_output_extend_3(self, bed_sam, intersect_dicts): + """Test parse intersect output with an extension of 3 nucleotides.""" + in_bed, in_sam, out_f = bed_sam + out_name, out_id_alias, out_ext_3 = intersect_dicts + + out_inter = parse_intersect_output(intersect_file=in_bed, extension=3) + + assert sorted(out_inter.items()) == sorted(out_ext_3.items()) + + +class TestGetTags: + """Test 'get_tags()' function.""" + + def test_get_tags_within_shift_range_1_extn(self, alns, intersect_dicts): + """Test get tags within shift range +/-1.""" + aln_1, aln_2 = alns + out_name, out_id_alias, out_ext_3 = intersect_dicts + + tags = get_tags( + intersecting_feat=out_name[aln_1.query_name], + alignment=aln_1, + shift=1, + ) + expected = "hsa-miR-524-3p|1|1|21M|21|GAAGGCGCTTCCCTTTGGAGT" + + assert next(iter(tags)) == expected + + def test_get_tags_out_shift_range(self, alns, intersect_dicts): + """Test get tags outside shift range +/-0.""" + aln_1, aln_2 = alns + out_name, out_id_alias, out_ext_3 = intersect_dicts + + tags = get_tags( + intersecting_feat=out_name[aln_1.query_name], + alignment=aln_2, + shift=0, + ) + assert tags == set() + + class TestParseArguments: """Test 'parse_arguments()' function.""" @@ -120,6 +367,8 @@ def test_all_input(self, monkeypatch, bed_sam): "alias", "--extension", "6", + "--shift", + "6", ], ) args = parse_arguments().parse_args() @@ -150,7 +399,7 @@ def test_main_empty_bed_file( main(args) captured = capsys.readouterr() - with open(empty_sam, "r") as out_file: + with open(empty_sam, encoding="utf-8") as out_file: assert captured.out == out_file.read() def test_main_empty_sam_file( @@ -175,7 +424,7 @@ def test_main_empty_sam_file( main(args) captured = capsys.readouterr() - with open(empty_sam, "r") as out_file: + with open(empty_sam, encoding="utf-8") as out_file: assert captured.out == out_file.read() def test_main_bed_sam_file(self, monkeypatch, capsys, bed_sam): @@ -197,13 +446,13 @@ def test_main_bed_sam_file(self, monkeypatch, capsys, bed_sam): main(args) captured = capsys.readouterr() - with open(output, "r") as out_file: + with open(output, encoding="utf-8") as out_file: assert captured.out == out_file.read() def test_main_bed_sam_extension_file( self, monkeypatch, capsys, bed_sam_extension ): - """Test main function with extension equals 6.""" + """Test main function with extension and allowed shit equal to 6.""" in_bed, in_sam, output = bed_sam_extension monkeypatch.setattr( @@ -217,13 +466,15 @@ def test_main_bed_sam_extension_file( str(in_sam), "--extension", "6", + "--shift", + "6", ], ) args = parse_arguments().parse_args() main(args) captured = capsys.readouterr() - with open(output, "r") as out_file: + with open(output, encoding="utf-8") as out_file: assert captured.out == out_file.read() def test_main_bed_sam_file_id(self, monkeypatch, capsys, bed_sam_id): @@ -247,5 +498,5 @@ def test_main_bed_sam_file_id(self, monkeypatch, capsys, bed_sam_id): main(args) captured = capsys.readouterr() - with open(output, "r") as out_file: + with open(output, encoding="utf-8") as out_file: assert captured.out == out_file.read() diff --git a/scripts/tests/test_mirna_quantification.py b/scripts/tests/test_mirna_quantification.py index e08d630..162e7e0 100644 --- a/scripts/tests/test_mirna_quantification.py +++ b/scripts/tests/test_mirna_quantification.py @@ -95,7 +95,7 @@ def read_len_sam_file(): def uncollapsed_sam_file(): """Import path to uncollapsed test files.""" sam_file = Path("files/in_aln_tag.sam") - out_table = Path("files/uncollpased_iso_mirna_quantification") + out_table = Path("files/uncollapsed_iso_mirna_quantification") return sam_file, out_table @@ -176,7 +176,7 @@ def test_correct_input(self, monkeypatch, empty_file): sys, "argv", [ - "mirna__quantification", + "mirna_quantification", str(in_sam), "--lib", "test_lib", @@ -261,17 +261,32 @@ class TestGetName: def test_canonical(self): """Test canonical miRNA name.""" name = ["mirna", "hsa-miR-1323"] - assert get_name("hsa-miR-1323|0|0|22M|22") == name + assert ( + get_name("hsa-miR-1323|0|0|22M|22|TCAAAACTGAGGGGCATTGGATTCT") + == name + ) def test_iso_0_shift(self): """Test isoform with 0 shift.""" - name = ["isomir", "hsa-miR-1323|0|0|18M3I4M|22"] - assert get_name("hsa-miR-1323|0|0|18M3I4M|22") == name + name = [ + "isomir", + "hsa-miR-1323|0|0|18M3I4M|22|TCAAAACTGAGGGGCATTGGATTCT", + ] + assert ( + get_name("hsa-miR-1323|0|0|18M3I4M|22|TCAAAACTGAGGGGCATTGGATTCT") + == name + ) def test_iso(self): """Test isoform with shift.""" - name = ["isomir", "hsa-miR-1323|2|0|18M3I4M|22"] - assert get_name("hsa-miR-1323|2|0|18M3I4M|22") == name + name = [ + "isomir", + "hsa-miR-1323|2|0|18M3I4M|22|TCAAAACTGAGGGGCATTGGATTCT", + ] + assert ( + get_name("hsa-miR-1323|2|0|18M3I4M|22|TCAAAACTGAGGGGCATTGGATTCT") + == name + ) class TestMain: diff --git a/test/expected_output.md5 b/test/expected_output.md5 index 1a2161a..ad81a5a 100644 --- a/test/expected_output.md5 +++ b/test/expected_output.md5 @@ -1,10 +1,10 @@ -68f943f89b52d628851dd97fb1399d68 results/TABLES/all_mirna_counts.tab +2f1b225c294ca0e22f565b4533b9c362 results/TABLES/all_mirna_counts.tab 363ecee318c57ee7e2e45ca468007baa results/TABLES/all_pri-mir_counts.tab a0d36054628fbe1975e142d638fbb0ff results/test_lib/alignments_intersecting_mirna_uncollapsed_sorted.bam.bai 1371823fdc7a218e1e92ad546cfac585 results/test_lib/alignments_intersecting_mirna_uncollapsed_sorted.bam cc01c7884838a597c587437cb0acf64e results/test_lib/alignments_intersecting_mirna.sam b1eb81426f890d671bba8c8a815edc1e results/test_lib/alignments_intersecting_primir.sam -eec9be6cda61d2728290c92c1209f455 results/intermediates/TABLES/mirna_counts_test_lib +48bc2337cce6f361d8a2a2c4b09b6011 results/intermediates/TABLES/mirna_counts_test_lib a844e3a29159e36e2f17a0646d1e8c5f results/intermediates/TABLES/pri-mir_counts_test_lib 48e605df55bf2dd37ea5a5a74eb5872a results/intermediates/test_lib/mappings_all.sam e9aac4afeb2053385d60f5e4b07a9774 results/intermediates/test_lib/mappings_all_removed_inferiors.sam @@ -15,7 +15,7 @@ e632f8984d423d46bbb377ec75468521 results/intermediates/test_lib/transcriptome_m a124a5afdb5f7bfbcc5683260556c9c4 results/intermediates/test_lib/mappings_all_no_header.sam d62630102c33d43d593af14c2a642839 results/intermediates/test_lib/alignments_all.sam defdc8c46e1d73692edde0e0278f2d5e results/intermediates/test_lib/oligomap_genome_mappings.oligomap -81103749d61bc55ee2cfc84ca1527456 results/intermediates/test_lib/alignments_intersecting_mirna_tag.sam +577d3675ef2bc42f80c7c2ea2f9e5004 results/intermediates/test_lib/alignments_intersecting_mirna_tag.sam 76643f87bb2e2bff77d1b1223d7720b5 results/intermediates/test_lib/segemehl_genome_mappings.sam d41d8cd98f00b204e9800998ecf8427e results/intermediates/test_lib/transcriptome_mappings_to_genome.sam d41d8cd98f00b204e9800998ecf8427e results/intermediates/test_lib/oligomap_transcriptome_mappings.oligomap @@ -32,7 +32,7 @@ f5cb65466d328036a15b66cfbd4d8419 results/intermediates/test_lib/oligomap_genome 6cbdb9299e09b3e39b79a50db69226b5 results/intermediates/test_lib/transcriptome_mappings_no_header.sam e632f8984d423d46bbb377ec75468521 results/intermediates/test_lib/transcriptome_mappings.sam 947607be69c16246f8dc9adbd9b971c8 results/intermediates/test_lib/oligomap_genome_mappings.sam -ce3fcd037e0a6a0b1a7a3253219e7053 results/intermediates/test_lib/alignments_intersecting_mirna_sorted_tag.sam +2b65293cb0dea3fc73ce4ae816047e3a results/intermediates/test_lib/alignments_intersecting_mirna_sorted_tag.sam 53764354c520d9700f13761c2721d8aa results/intermediates/test_lib/alignments_intersecting_primir_sorted.bam d41d8cd98f00b204e9800998ecf8427e results/intermediates/test_lib/oligomap_transcriptome_mappings.sam a124a5afdb5f7bfbcc5683260556c9c4 results/intermediates/test_lib/genome_mappings_no_header.sam diff --git a/workflow/rules/quantify.smk b/workflow/rules/quantify.smk index e3fe767..a858ddf 100644 --- a/workflow/rules/quantify.smk +++ b/workflow/rules/quantify.smk @@ -304,6 +304,7 @@ rule add_intersecting_mirna_tag: --bed {input.intersect} \ --sam {input.alignments} \ --extension {params.extension} \ + --shift {params.extension} \ > {output.sam} \ ) &> {log}"