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reactions.yaml
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reactions.yaml
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- id: BIO_L
equation:
reversible: false
left:
- id: S_Sucrose_biomass
compartment: biomass
value: 0.096
- id: S_Glucose_biomass
compartment: biomass
value: 0.053
- id: S_beta_45_D_45_Fructose_biomass
compartment: biomass
value: 0.053
- id: S_Starch_biomass
compartment: biomass
value: 0.265
- id: S_Cellulose_biomass
compartment: biomass
value: 0.305
- id: S_D_45_Xylose_biomass
compartment: biomass
value: 0.282
- id: S_4_45_Coumaryl_32_alcohol_biomass
compartment: biomass
value: 0.04
- id: S_Coniferyl_32_alcohol_biomass
compartment: biomass
value: 0.048
- id: S_Sinapyl_32_alcohol_biomass
compartment: biomass
value: 0.056
- id: S_L_45_Alanine_biomass
compartment: biomass
value: 0.107
- id: S_L_45_Asparagine_biomass
compartment: biomass
value: 0.39
- id: S_L_45_Aspartate_biomass
compartment: biomass
value: 0.162
- id: S_L_45_Cysteine_biomass
compartment: biomass
value: 0.024
- id: S_L_45_Glutamate_biomass
compartment: biomass
value: 0.39
- id: S_L_45_Glutamine_biomass
compartment: biomass
value: 0.35
- id: S_Glycine_biomass
compartment: biomass
value: 0.14
- id: S_L_45_Isoleucine_biomass
compartment: biomass
value: 0.06
- id: S_L_45_Leucine_biomass
compartment: biomass
value: 0.14
- id: S_L_45_Methionine_biomass
compartment: biomass
value: 0.0020
- id: S_L_45_Phenylalanine_biomass
compartment: biomass
value: 0.08
- id: S_L_45_Proline_biomass
compartment: biomass
value: 0.01
- id: S_L_45_Serine_biomass
compartment: biomass
value: 0.21
- id: S_L_45_Threonine_biomass
compartment: biomass
value: 0.086
- id: S_L_45_Tryptophan_biomass
compartment: biomass
value: 0.04
- id: S_L_45_Tyrosine_biomass
compartment: biomass
value: 0.03
- id: S_L_45_Valine_biomass
compartment: biomass
value: 0.1
- id: S_L_45_Lysine_biomass
compartment: biomass
value: 0.0010
- id: S_Hexadecanoic_32_acid_biomass
compartment: biomass
value: 0.026
- id: S_ATP_biomass
compartment: biomass
value: 0.0029
- id: S_GTP_biomass
compartment: biomass
value: 0.0039
- id: S_dATP_biomass
compartment: biomass
value: 0.0027
- id: S_dGTP_biomass
compartment: biomass
value: 0.0017
- id: S_CTP_biomass
compartment: biomass
value: 0.0033
- id: S_UTP_biomass
compartment: biomass
value: 0.0029
- id: S_dCTP_biomass
compartment: biomass
value: 0.0019
- id: S_dTTP_biomass
compartment: biomass
value: 0.0028
- id: S_ATP_c
compartment: c
value: 30
right:
- id: S_ADP_c
compartment: c
value: 30
- id: S_Orthophosphate_c
compartment: c
value: 30
subsystem: Biomass synthesis (Leaf)
- id: Bc1
equation: S_alpha_45_D_45_Glucose_c[c] => S_Glucose_biomass[biomass]
subsystem: Glucose drain
- id: Bc10
equation: S_L_45_Seryl_45_tRNA_40_Ser_41_[c] => S_L_45_Serine_biomass[biomass]
+ S_tRNA_40_Ser_41_[c]
subsystem: Serine drain
- id: Bc11
equation: S_L_45_Threonyl_45_tRNA_40_Thr_41_[c] => S_L_45_Threonine_biomass[biomass]
+ S_tRNA_40_Thr_41_[c]
subsystem: Threonine drain
- id: Bc12
equation: S_L_45_Methionyl_45_tRNA_40_Met_41_[c] => S_L_45_Methionine_biomass[biomass]
+ S_tRNA_40_Met_41_[c]
subsystem: Mehionine drain
- id: Bc13
equation: S_L_45_Cysteinyl_45_tRNA_40_Cys_41_[c] => S_L_45_Cysteine_biomass[biomass]
+ S_tRNA_40_Cys_41_[c]
subsystem: Cysteine drain
- id: Bc14
equation: S_L_45_Valyl_45_tRNA_40_Val_41_[c] => S_L_45_Valine_biomass[biomass]
+ S_tRNA_40_Val_41_[c]
subsystem: Valine drain
- id: Bc15
equation: S_L_45_Leucyl_45_tRNA_40_Leu_41_[c] => S_L_45_Leucine_biomass[biomass]
+ S_tRNA_40_Leu_41_[c]
subsystem: Leucine drain
- id: Bc16
equation: S_L_45_Isoleucyl_45_tRNA_40_Ile_41_[c] => S_L_45_Isoleucine_biomass[biomass]
+ S_tRNA_40_Ile_41_[c]
subsystem: Isoleucine drain
- id: Bc17
equation: S_Glutaminyl_45_tRNA_40_Gln_41_[c] => S_L_45_Glutamine_biomass[biomass]
+ S_tRNA_40_Gln_41__c[c]
subsystem: Glutamine drain
- id: Bc18
equation: S_L_45_Arginyl_45_tRNA_40_Arg_41_[c] => S_L_45_Arginine_biomass[biomass]
+ S_tRNA_40_Arg_41_[c]
subsystem: Arginine drain
- id: Bc19
equation: S_L_45_Prolyl_45_tRNA_40_Pro_41_[c] => S_L_45_Proline_biomass[biomass]
+ S_tRNA_40_Pro_41_[c]
subsystem: Proline drain
- id: Bc2
equation: S_Sucrose_c[c] => S_Sucrose_biomass[biomass]
subsystem: Sucrose drain
- id: Bc20
equation: S_L_45_Lysyl_45_tRNA_40_Lys_41_[c] => S_L_45_Lysine_biomass[biomass]
+ S_tRNA_40_Lys_41_[c]
subsystem: Lysine drain
- id: Bc21
equation: S_L_45_Histidyl_45_tRNA_40_His_41_[c] => S_L_45_Histidine_biomass[biomass]
+ S_tRNA_40_His_41_[c]
subsystem: Histidine drain
- id: Bc22
equation: S_L_45_Phenylalanyl_45_tRNA_40_Phe_41_[c] => S_L_45_Phenylalanine_biomass[biomass]
+ S_tRNA_40_Phe_41_[c]
subsystem: Phenylalanine drain
- id: Bc23
equation: S_L_45_Tyrosyl_45_tRNA_40_Tyr_41_[c] => S_L_45_Tyrosine_biomass[biomass]
+ S_tRNA_40_Tyr_41_[c]
subsystem: Tyrosine drain
- id: Bc24
equation: S_L_45_Tryptophanyl_45_tRNA_40_Trp_41_[c] => S_L_45_Tryptophan_biomass[biomass]
+ S_tRNA_40_Trp_41_[c]
subsystem: Tryptophan drain
- id: Bc25
equation: S_L_45_Asparaginyl_45_tRNA_40_Asn_41_[c] => S_L_45_Asparagine_biomass[biomass]
+ S_tRNA_40_Asn_41_[c]
subsystem: Asparagine drain
- id: Bc26
equation: S_4_45_Coumaryl_32_alcohol_c[c] => S_4_45_Coumaryl_32_alcohol_biomass[biomass]
subsystem: 4-Coumaryl alcohol drain
- id: Bc27
equation: S_Coniferyl_32_alcohol_c[c] => S_Coniferyl_32_alcohol_biomass[biomass]
subsystem: Coniferyl alcohol drain
- id: Bc28
equation: S_Sinapyl_32_alcohol_c[c] => S_Sinapyl_32_alcohol_biomass[biomass]
subsystem: Sinapyl alcohol drain
- id: Bc29
equation: S_beta_45_D_45_Fructose_c[c] => S_beta_45_D_45_Fructose_biomass[biomass]
subsystem: Fructose drain
- id: Bc3
equation: S_Cellulose_c[c] => S_Cellulose_biomass[biomass]
subsystem: Cellulose drain
- id: Bc30
equation: S_Hexadecanoic_32_acid_acc[acc] => S_Hexadecanoic_32_acid_biomass[biomass]
subsystem: FA biomass drain
- id: Bc31
equation: S_dATP_c[c] => S_dATP_biomass[biomass] + S_Pyrophosphate_c[c]
subsystem: dATP drain
- id: Bc32
equation: S_dGTP_c[c] => S_dGTP_biomass[biomass] + S_Pyrophosphate_c[c]
subsystem: dGTP drain
- id: Bc33
equation: S_dCTP_c[c] => S_dCTP_biomass[biomass] + S_Pyrophosphate_c[c]
subsystem: dCTP drain
- id: Bc34
equation: S_dTTP_c[c] => S_dTTP_biomass[biomass] + S_Pyrophosphate_c[c]
subsystem: dTTP drain
- id: Bc35
equation: S_ATP_c[c] => S_ATP_biomass[biomass] + S_Pyrophosphate_c[c]
subsystem: ATP drain
- id: Bc36
equation: S_GTP_c[c] => S_GTP_biomass[biomass] + S_Pyrophosphate_c[c]
subsystem: GTP drain
- id: Bc37
equation: S_CTP_c[c] => S_CTP_biomass[biomass] + S_Pyrophosphate_c[c]
subsystem: CTP drain
- id: Bc38
equation: S_UTP_c[c] => S_UTP_biomass[biomass] + S_Pyrophosphate_c[c]
subsystem: UTP drain
- id: Bc4
equation: S_Starch_p[p] => S_Starch_biomass[biomass]
subsystem: Starch drain
- id: Bc5
equation: S_D_45_Xylose_c[c] => S_D_45_Xylose_biomass[biomass]
subsystem: Xylose drain (Hemicellulose)
- id: Bc6
equation: S_L_45_Glutamyl_45_tRNA_40_Glu_41_[c] => S_L_45_Glutamate_biomass[biomass]
+ S_tRNA_40_Glu_41_[c]
subsystem: Glutamate drain
- id: Bc7
equation: S_L_45_Alanyl_45_tRNA[c] => S_L_45_Alanine_biomass[biomass] + S_tRNA_40_Ala_41_[c]
subsystem: Alanine drain
- id: Bc8
equation: S_L_45_Aspartyl_45_tRNA_40_Asn_41_[c] => S_L_45_Aspartate_biomass[biomass]
+ S_tRNA_40_Asn_41_[c]
subsystem: Aspartate drain
- id: Bc9
equation: S_Glycyl_45_tRNA_40_Gly_41_[c] => S_Glycine_biomass[biomass] + S_tRNA_40_Gly_41_[c]
subsystem: Glycine drain
- id: Ex14
equation: S_beta_45_D_45_Fructose_c[c] <=> S_beta_45_D_45_Fructose_ext[ext]
subsystem: Fructose transport
- id: Ex16
equation: => S_hv[p]
subsystem: photons
- id: R00004_c
name: Pyrophosphate phosphohydrolase
genes: AT1G01050 or AT1G15690 or AT2G18230 or AT2G46860 or AT3G53620 or AT4G01480
equation: S_Pyrophosphate_c[c] + S_H2O_c[c] => (2) S_Orthophosphate_c[c]
subsystem: Pyrophosphate hydrolysis
- id: R00006_c
name: acetolactate synthase, chloroplast / acetohydroxy-acid synthase (ALS)
genes: AT3G48560
equation: (2) S_Pyruvate_c[c] => S_2_45_Acetolactate[c] + S_CO2_c[c]
subsystem: Pantothenate and CoA biosynthesis
- id: R00009_x
name: CAT3
genes: AT1G20620 or AT1G20630 or AT4G35090
equation: (2) S_H2O2_x[x] => S_Oxygen_x[x] + (2) S_H2O_x[x]
subsystem: Catalase/peroxidase
- id: R00010_c
name: glycosyl hydrolase family protein 37 / trehalase, putative
genes: AT4G24040
equation: S_alpha_44_alpha_45_Trehalose[c] + S_H2O_c[c] => (2) S_D_45_Glucose[c]
subsystem: Starch and sucrose metabolism
- id: R00014_c
name: pyruvate dehydrogenase E1 component alpha subunit, chloroplast
genes: AT1G01090 or AT1G24180 or AT1G30120 or AT1G59900 or AT2G34590 or AT3G48560
or AT4G33070 or AT5G01320 or AT5G01330 or AT5G50850 or AT5G54960
equation: S_Thiamin_32_diphosphate_c[c] + S_Pyruvate_c[c] => S_2_45__40_alpha_45_Hydroxyethyl_41_thiamine_32_diphosphate[c]
+ S_CO2_c[c]
subsystem: Butanoate metabolism; Glycolysis / Gluconeogenesis; Valine, leucine
and isoleucine biosynthesis
- id: R00021_p
name: glutamate synthase, chloroplast (GLU2) / ferredoxin-dependent glutamate synthase
(Fd-GOGAT 2)
genes: AT2G41220 or AT5G04140
equation: S_L_45_Glutamine_p[p] + S_2_45_Oxoglutarate_p[p] + (2) S_Reduced_32_ferredoxin[p]
=> (2) S_L_45_Glutamate_p[p] + (2) S_Oxidized_32_ferredoxin[p]
subsystem: Nitrogen metabolism
- id: R00022_c
name: glycosyl hydrolase family 20 protein
genes: AT1G05590 or AT3G55260
equation: S_Chitobiose[c] + S_H2O_c[c] => (2) S_N_45_Acetyl_45_D_45_glucosamine[c]
subsystem: Aminosugars metabolism
- id: R00024_p
name: ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit
1A (RBCS-1A) (ATS1A)
genes: ARTHCP030 or AT1G67090 or AT5G38410 or AT5G38420 or AT5G38430
equation: S_D_45_Ribulose_32_1_44_5_45_bisphosphate[p] + S_CO2_p[p] + S_H2O_p[p]
=> (2) S_3_45_Phospho_45_D_45_glycerate_p[p]
subsystem: Carbon fixation
- id: R00026_c
name: glycosyl hydrolase family 3 protein
genes: AT1G02640 or AT1G26560 or AT2G44450 or AT2G44480 or AT3G18080 or AT3G47000
or AT3G47050 or AT5G42260 or AT5G44640
equation: S_Cellobiose[c] + S_H2O_c[c] => (2) S_beta_45_D_45_Glucose[c]
subsystem: Starch and sucrose metabolism
- id: R00028_c
name: glycosyl hydrolase family 31, located in endomembrane system
genes: AT3G45940 or AT5G11720 or AT5G63840
equation: S_Maltose_c[c] + S_H2O_c[c] => (2) S_alpha_45_D_45_Glucose_c[c]
subsystem: Starch and sucrose metabolism
- id: R00028_p
name: alpha-xylosidase, putative; located in endomembrane system
genes: AT3G45940 or AT5G11720 or AT5G63840
equation: S_Maltose_p[p] + S_H2O_p[p] => (2) S_alpha_45_D_45_Glucose_p[p]
subsystem: Starch and sucrose metabolism
- id: R00036_c
name: porphobilinogen synthase, putative / delta-aminolevulinic acid dehydratase,
putative
genes: AT1G44318 or AT1G69740
equation: (2) S_5_45_Aminolevulinate[c] => S_Porphobilinogen[c] + (2) S_H2O_c[c]
subsystem: Porphyrin and chlorophyll metabolism
- id: R00047_c
name: omega-3 fatty acid desaturase, chloroplast (FAD7) (FADD)
genes: AT4G14210
equation: S_Oxygen_c[c] + (2) S_6_45_Hydroxynicotinate[c] => (2) S_2_44_5_45_Dihydroxypyridine[c]
+ (2) S_CO2_c[c]
subsystem: Nicotinate and nicotinamide metabolism
- id: R00066_c
name: lumazine-binding family protein
genes: AT2G20690
equation: (2) S_6_44_7_45_Dimethyl_45_8_45__40_1_45_D_45_ribityl_41_lumazine[c]
=> S_Riboflavin[c]
subsystem: Riboflavin metabolism
- id: R00068_c
name: multi-copper oxidase type I family protein
genes: AT1G55570 or AT5G21100
equation: S_Oxygen_c[c] + (2) S_Ascorbate[c] => (2) S_L_45_Dehydroascorbate[c]
+ (2) S_H2O_c[c]
subsystem: Ascorbate and aldarate metabolism
- id: R00084_c
name: hydroxymethylbilane synthase (porphobilinogen deaminase, chloroplast) (pre-uroporphyrinogen
synthase)
genes: AT5G08280
equation: (4) S_Porphobilinogen[c] + S_H2O_c[c] => S_Hydroxymethylbilane[c] + (4)
S_NH3_c[c]
subsystem: Porphyrin and chlorophyll metabolism
- id: R00086_c
name: apyrase (APY1)
genes: ARTHCP007 or ARTHCP008 or ARTHCP009 or ARTHCP010 or ARTHCP028 or ARTHCP029
or ARTHMP035 or ARTHMP094 or ARTHMP098 or AT1G07670 or AT1G07810 or AT1G10130
or AT1G12840 or AT1G13210 or AT1G15700 or AT1G17260 or AT1G17500 or AT1G19910
or AT1G26130 or AT1G51650 or AT1G54280 or AT1G59820 or AT1G63440 or AT1G64200
or AT1G68710 or AT1G72700 or AT1G75630 or AT1G76030 or AT1G78900 or AT1G80350
or AT1G80660 or AT2G07560 or AT2G07698 or AT2G07741 or AT2G18960 or AT2G19110
or AT2G19680 or AT2G21410 or AT2G22950 or AT2G24520 or AT2G25610 or AT2G28520
or AT2G33040 or AT2G41560 or AT3G08560 or AT3G13900 or AT3G21180 or AT3G22910
or AT3G25610 or AT3G27870 or AT3G28710 or AT3G28715 or AT3G42050 or AT3G42640
or AT3G47950 or AT3G52300 or AT3G57330 or AT3G58730 or AT3G60330 or AT3G63380
or AT4G00900 or AT4G02620 or AT4G04640 or AT4G04910 or AT4G09650 or AT4G11150
or AT4G23710 or AT4G25950 or AT4G29900 or AT4G30110 or AT4G30190 or AT4G32530
or AT4G37640 or AT4G39080 or AT5G08670 or AT5G08680 or AT5G08690 or AT5G13450
or AT5G44240 or AT5G44790 or AT5G47030 or AT5G55290 or AT5G57350 or AT5G62670
equation: S_ATP_c[c] + S_H2O_c[c] <=> S_ADP_c[c] + S_Orthophosphate_c[c]
subsystem: Purine metabolism
- id: R00089_c
name: adenylate cyclase
genes: AT2G11890
equation: S_ATP_c[c] => S_3_39__44_5_39__45_Cyclic_32_AMP[c] + S_Pyrophosphate_c[c]
subsystem: Purine metabolism
- id: R00093_p
name: glutamate synthase, NADH-dependent glutamate synthase, located in plastid
genes: AT5G53460
equation: S_L_45_Glutamine_p[p] + S_2_45_Oxoglutarate_p[p] + S_NADH_c_m_p[p] +
S_H_43__p[p] => (2) S_L_45_Glutamate_p[p] + S_NAD_43__c_m_p[p]
subsystem: Glutamate metabolism; Nitrogen metabolism
- id: R00095_c
name: monodehydroascorbate reductase, putative (mitochondrial)
genes: AT3G09940 or AT3G27820 or AT3G52880 or AT5G03630
equation: S_NAD_43__c_m_p[c] + (2) S_Ascorbate[c] <=> S_NADH_c_m_p[c] + (2) S_Monodehydroascorbate[c]
+ S_H_43__c[c]
subsystem: Ascorbate and aldarate metabolism
- id: R00095_tmx
name: monodehydroascorbate reductase, putative
genes: AT5G03630
equation: S_NADH_x[x] + (2) S_Monodehydroascorbate[c] + S_H_43__x[x] <=> S_NAD_43__x[x]
+ (2) S_Ascorbate[c]
subsystem: (Transmembrane) Ascorbate and aldarate metabolism
- id: R00100_c
name: NADH-cytochrome b5 reductase
genes: AT5G17770
equation: S_NADH_c_m_p[c] + (2) S_Ferricytochrome_32_b5[c] + S_H_43__c[c] => S_NAD_43__c_m_p[c]
+ (2) S_Ferrocytochrome_32_b5[c]
subsystem: Aminosugars metabolism
- id: R00103_c
equation: S_NAD_43__c_m_p[c] + S_H2O_c[c] => S_AMP_c[c] + S_Nicotinamide_32_D_45_ribonucleotide[c]
subsystem: Nicotinate and nicotinamide metabolism; Pantothenate and CoA biosynthesis;
Riboflavin metabolism; Starch and sucrose metabolism; Purine metabolism
- id: R00114_c
name: glutamate synthase [NADH], chloroplast, putative
genes: AT5G53460
equation: S_L_45_Glutamine_c[c] + S_2_45_Oxoglutarate_c[c] + S_NADPH[c] + S_H_43__c[c]
=> (2) S_L_45_Glutamate_c[c] + S_NADP_43_[c]
subsystem: Glutamate metabolism; Nitrogen metabolism
- id: R00115_c
name: glutathione reductase, putative
genes: AT3G54660
equation: S_NADP_43_[c] + (2) S_Glutathione[c] <=> S_Oxidized_32_glutathione[c]
+ S_NADPH[c] + S_H_43__c[c]
subsystem: Glutamate metabolism; Glutathione metabolism
- id: R00122_c
name: apyrase
genes: AT3G04080 or AT5G18280
equation: S_ADP_c[c] + S_H2O_c[c] => S_AMP_c[c] + S_Orthophosphate_c[c]
subsystem: Purine metabolism
- id: R00126_c
equation: S_ADP_c[c] + S_ATP_c[c] => S_Orthophosphate_c[c] + S_P1_44_P4_45_Bis_40_5_39__45_adenosyl_41__32_tetraphosphate[c]
subsystem: Purine metabolism
- id: R00127_c
name: adenylate kinase -related protein
genes: AT5G47840 or AT5G50370
equation: S_ATP_c[c] + S_AMP_c[c] <=> (2) S_ADP_c[c]
subsystem: Purine metabolism
- id: R00130_c
name: dephospho-CoA kinase family
equation: S_ATP_c[c] + S_Dephospho_45_CoA[c] => S_ADP_c[c] + S_CoA_c[c]
subsystem: Pantothenate and CoA biosynthesis
- id: R00131_c
name: urease, putative / urea amidohydrolase, putative
equation: S_Urea[c] + S_H2O_c[c] => S_CO2_c[c] + (2) S_NH3_c[c]
subsystem: Purine metabolism; Urea cycle and metabolism of amino groups
- id: R00132N_c
name: carbonic anhydrase 1, chloroplast / carbonate dehydratase 1 (CA1)
genes: AT1G08065 or AT1G08080 or AT1G23730 or AT1G58180 or AT1G70410 or AT2G28210
or AT3G01500 or AT3G52720 or AT4G20990 or AT4G21000 or AT5G04180 or AT5G14740
equation: S_H2O_c[c] + S_CO2_c[c] => S_H_43__c[c] + S_HCO3_45_[c]
subsystem: Nitrogen metabolism
- id: R00132N_m
name: carbonic anhydrase 1, chloroplast / carbonate dehydratase 1 (CA1)
genes: AT1G08065 or AT1G08080 or AT1G23730 or AT1G58180 or AT1G70410 or AT2G28210
or AT3G01500 or AT3G52720 or AT4G20990 or AT4G21000 or AT5G04180 or AT5G14740
equation: S_H2O_m[m] + S_CO2_m[m] => S_H_43__m[m] + S_HCO3_45_[m]
subsystem: Nitrogen metabolism
- id: R00132N_p
name: carbonic anhydrase 1, chloroplast / carbonate dehydratase 1 (CA1)
genes: AT1G08065 or AT1G08080 or AT1G23730 or AT1G58180 or AT1G70410 or AT2G28210
or AT3G01500 or AT3G52720 or AT4G20990 or AT4G21000 or AT5G04180 or AT5G14740
equation: S_H2O_p[p] + S_CO2_p[p] => S_H_43__p[p] + S_HCO3_45_[p]
subsystem: Nitrogen metabolism
- id: R00135_c
name: proline iminopeptidase
genes: AT2G14260 or AT2G24200 or AT4G30910
equation: S_Peptide[c] + S_H2O_c[c] => S_L_45_Proline_c[c] + S_Peptide[c]
subsystem: Arginine and proline metabolism
- id: R00149_c
name: Carbon-dioxide:ammonia ligase
genes: AT1G29900
equation: (2) S_ATP_c[c] + S_NH3_c[c] + S_CO2_c[c] + S_H2O_c[c] <=> (2) S_ADP_c[c]
+ S_Orthophosphate_c[c] + S_Carbamoyl_32_phosphate[c]
subsystem: Urea cycle and metabolism of amino groups; Glutamate metabolism; Arginine
and proline metabolism; Nitrogen metabolism
- id: R00149_p
name: Carbon-dioxide:ammonia ligase
genes: AT1G29900
equation: (2) S_ATP_p[p] + S_NH3_p[p] + S_CO2_p[p] + S_H2O_p[p] <=> (2) S_ADP_p[p]
+ S_Orthophosphate_p[p] + S_Carbamoyl_32_phosphate[p]
subsystem: Urea cycle and metabolism of amino groups; Glutamate metabolism; Arginine
and proline metabolism; Nitrogen metabolism
- id: R00155_c
name: nucleoside-diphosphatase
equation: S_UDP[c] + S_H2O_c[c] => S_UMP[c] + S_Orthophosphate_c[c]
subsystem: Pyrimidine metabolism; Purine metabolism
- id: R00156_c
name: nucleoside diphosphate kinase 1 (NDK1)
genes: AT4G23900 or AT5G63310
equation: S_ATP_c[c] + S_UDP[c] <=> S_ADP_c[c] + S_UTP_c[c]
subsystem: Pyrimidine metabolism
- id: R00157_c
equation: S_UTP_c[c] + S_AMP_c[c] => S_UDP[c] + S_ADP_c[c]
subsystem: Pyrimidine metabolism
- id: R00158_c
name: ATP:nucleoside-phosphate phosphotransferase
genes: AT3G18680 or AT5G26667
equation: S_ATP_c[c] + S_UMP[c] <=> S_ADP_c[c] + S_UDP[c]
subsystem: Pyrimidine metabolism
- id: R00159_c
equation: S_UTP_c[c] + S_H2O_c[c] => S_UDP[c] + S_Orthophosphate_c[c]
subsystem: Pyrimidine metabolism
- id: R00174_c
name: pfkB type carbohydrate kinase protein family
genes: AT5G37850
equation: S_ATP_c[c] + S_Pyridoxal[c] => S_ADP_c[c] + S_Pyridoxal_32_phosphate[c]
subsystem: Vitamin B6 metabolism
- id: R00177_c
name: S-adenosylmethionine synthetase 1 (SAM1)
genes: AT2G36880 or AT3G17390
equation: S_ATP_c[c] + S_L_45_Methionine_c[c] + S_H2O_c[c] => S_Orthophosphate_c[c]
+ S_Pyrophosphate_c[c] + S_S_45_Adenosyl_45_L_45_methionine[c]
subsystem: Methionine metabolism
- id: R00178_c
name: adenosylmethionine decarboxylase family protein
genes: AT3G02470 or AT3G25570 or AT5G15950 or AT5G18930
equation: S_S_45_Adenosyl_45_L_45_methionine[c] => S_S_45_Adenosylmethioninamine[c]
+ S_CO2_c[c]
subsystem: Arginine and proline metabolism; Methionine metabolism
- id: R00179_c
name: 1-aminocyclopropane-1-carboxylate synthase 2 / ACC synthase 2 (ACS2) (ACC1)
genes: AT2G22810 or AT3G49700 or AT3G61510 or AT4G37770 or AT5G65800
equation: S_S_45_Adenosyl_45_L_45_methionine[c] => S_1_45_Aminocyclopropane_45_1_45_carboxylate[c]
+ S_5_39__45_Methylthioadenosine[c]
subsystem: Propanoate metabolism
- id: R00181_c
name: AMP deaminase, putative / myoadenylate deaminase, putative
equation: S_AMP_c[c] + S_H2O_c[c] => S_IMP[c] + S_NH3_c[c]
subsystem: Purine metabolism
- id: R00183_c
name: acid phosphatase survival protein SurE, putative
genes: AT1G72880 or AT4G14930
equation: S_AMP_c[c] + S_H2O_c[c] => S_Adenosine[c] + S_Orthophosphate_c[c]
subsystem: Purine metabolism
- id: R00184_c
name: P1,P4-Bis(5'-nucleosyl)-tetraphosphate nucleotidohydrolase
genes: AT1G30110 or AT3G10620 or AT5G06340
equation: S_P1_44_P4_45_Bis_40_5_39__45_adenosyl_41__32_tetraphosphate[c] + S_H2O_c[c]
=> S_ATP_c[c] + S_AMP_c[c]
subsystem: Purine metabolism
- id: R00185_c
name: adenosine kinase 1 (ADK1) / adenosine 5'-phosphotransferase 1
equation: S_ATP_c[c] + S_Adenosine[c] <=> S_ADP_c[c] + S_AMP_c[c]
subsystem: Purine metabolism
- id: R00187_c
name: bis(5'-adenosyl)-triphosphatase-related; also similar to fragile histidine
triad
genes: AT5G58240
equation: S_P1_44_P3_45_Bis_40_5_39__45_adenosyl_41__32_triphosphate[c] + S_H2O_c[c]
=> S_ADP_c[c] + S_AMP_c[c]
subsystem: Purine metabolism
- id: R00190_c
name: adenine phosphoribosyltransferase 1 (APT1)
genes: AT1G27450 or AT1G71750 or AT1G80050 or AT4G12440 or AT4G22570 or AT5G11160
equation: S_AMP_c[c] + S_Pyrophosphate_c[c] <=> S_Adenine[c] + S_5_45_Phospho_45_alpha_45_D_45_ribose_32_1_45_diphosphate[c]
subsystem: Purine metabolism
- id: R00191_c
name: phosphodiesterase 1A, calmodulin-dependent (homodimer)
equation: S_3_39__44_5_39__45_Cyclic_32_AMP[c] + S_H2O_c[c] => S_AMP_c[c]
subsystem: Purine metabolism
- id: R00192_c
name: adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative
/ AdoHcyase, putative
genes: AT3G23810
equation: S_S_45_Adenosyl_45_L_45_homocysteine[c] + S_H2O_c[c] => S_Adenosine[c]
+ S_L_45_Homocysteine[c]
subsystem: Methionine metabolism
- id: R00200_c
name: pyruvate kinase, putative
genes: AT1G32440 or AT3G04050 or AT3G25960 or AT3G49160 or AT3G52990 or AT3G55650
or AT3G55810 or AT4G26390 or AT5G08570 or AT5G52920 or AT5G56350 or AT5G63680
equation: S_ADP_c[c] + S_Phosphoenolpyruvate_c[c] => S_ATP_c[c] + S_Pyruvate_c[c]
subsystem: Carbon fixation; Glycolysis / Gluconeogenesis; Purine metabolism; Pyruvate
metabolism
- id: R00200_p
name: pyruvate kinase, putative
genes: AT1G32440 or AT3G04050 or AT3G25960 or AT3G49160 or AT3G52990 or AT3G55650
or AT3G55810 or AT4G26390 or AT5G08570 or AT5G52920 or AT5G56350 or AT5G63680
equation: S_ADP_p[p] + S_Phosphoenolpyruvate_p[p] => S_ATP_p[p] + S_Pyruvate_p[p]
subsystem: Carbon fixation; Glycolysis / Gluconeogenesis; Purine metabolism; Pyruvate
metabolism
- id: R00206_p
name: pyruvate phosphate dikinase family protein
genes: AT4G15530
equation: S_ATP_p[p] + S_Pyruvate_p[p] + S_Orthophosphate_p[p] => S_AMP_p[p] +
S_Phosphoenolpyruvate_p[p] + S_Pyrophosphate_p[p]
subsystem: Carbon fixation; Pyruvate metabolism
- id: R00209_m
name: pyruvate dehydrogenase E1 component alpha subunit, mitochondrial, putative
genes: AT1G01090 or AT1G24180 or AT1G30120 or AT1G34430 or AT1G48030 or AT1G54220
or AT1G59900 or AT2G34590 or AT3G13930 or AT3G16950 or AT3G17240 or AT3G52200
or AT4G16155 or AT5G50850
equation: S_Pyruvate_m[m] + S_CoA_m[m] + S_NAD_43__c_m_p[m] => S_Acetyl_45_CoA[m]
+ S_CO2_m[m] + S_NADH_c_m_p[m]
subsystem: Alanine and aspartate metabolism; Pyruvate metabolism
- id: R00209_p
name: pyruvate dehydrogenase E1 component alpha subunit, chloroplast
genes: AT1G34430 or AT1G48030 or AT1G54220 or AT3G13930 or AT3G16950 or AT3G17240
or AT3G52200 or AT4G16155
equation: S_Pyruvate_p[p] + S_CoA_p[p] + S_NAD_43__c_m_p[p] => S_Acetyl_45_CoA[p]
+ S_CO2_p[p] + S_NADH_c_m_p[p]
subsystem: Alanine and aspartate metabolism; Pyruvate metabolism
- id: R00214_c
name: malate oxidoreductase, putative
equation: S__40_S_41__45_Malate_c[c] + S_NAD_43__c_m_p[c] => S_Pyruvate_c[c] +
S_CO2_c[c] + S_NADH_c_m_p[c]
subsystem: Carbon fixation; Pyruvate metabolism
- id: R00216_p
name: malate oxidoreductase, putative
genes: AT4G00570
equation: S__40_S_41__45_Malate_p[p] + S_NADP_43_[p] => S_Pyruvate_p[p] + S_CO2_p[p]
+ S_NADPH[p]
subsystem: Carbon fixation; Pyruvate metabolism
- id: R00219_c
name: 2,3-biphosphoglycerate-independent phosphoglycerate mutase family protein
/ phosphoglyceromutase family protein
genes: AT4G09520
equation: S_2_45_Hydroxyethylenedicarboxylate[c] => S_Pyruvate_c[c] + S_CO2_c[c]
subsystem: Pyruvate metabolism
- id: R00233_c
name: malonyl-CoA decarboxylase family protein
equation: S_Malonyl_45_CoA[c] => S_Acetyl_45_CoA[c] + S_CO2_c[c]
subsystem: Propanoate metabolism; beta-Alanine metabolism
- id: R00236_c
name: acetyl-CoA synthetase (acetate-CoA ligase), putative
genes: AT5G36880
equation: S_Acetyl_32_adenylate[c] + S_CoA_c[c] <=> S_AMP_c[c] + S_Acetyl_45_CoA[c]
subsystem: Pyruvate metabolism
- id: R00236_m
name: acetyl-CoA synthetase (acetate-CoA ligase), putative
genes: AT5G36880
equation: S_Acetyl_32_adenylate[m] + S_CoA_m[m] <=> S_AMP_m[m] + S_Acetyl_45_CoA[m]
subsystem: Pyruvate metabolism
- id: R00238_c
name: acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative
genes: AT1G04710 or AT2G33150 or AT5G48230 or AT5G48880
equation: (2) S_Acetyl_45_CoA[c] <=> S_CoA_c[c] + S_Acetoacetyl_45_CoA[c]
subsystem: Benzoate degradation via CoA ligation; Butanoate metabolism; Fatty acid
metabolism; Lysine degradation; Propanoate metabolism; Pyruvate metabolism; Synthesis
and degradation of ketone bodies; Tryptophan metabolism; Valine, leucine and
isoleucine degradation
- id: R00238_m
name: acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative
genes: AT5G48230
equation: (2) S_Acetyl_45_CoA[m] <=> S_CoA_m[m] + S_Acetoacetyl_45_CoA[m]
subsystem: Benzoate degradation via CoA ligation; Butanoate metabolism; Fatty acid
metabolism; Lysine degradation; Propanoate metabolism; Pyruvate metabolism; Synthesis
and degradation of ketone bodies; Tryptophan metabolism; Valine, leucine and
isoleucine degradation
- id: R00238_p
name: acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative
genes: AT5G48230
equation: (2) S_Acetyl_45_CoA[p] <=> S_CoA_p[p] + S_Acetoacetyl_45_CoA[p]
subsystem: Benzoate degradation via CoA ligation; Butanoate metabolism; Fatty acid
metabolism; Lysine degradation; Propanoate metabolism; Pyruvate metabolism; Synthesis
and degradation of ketone bodies; Tryptophan metabolism; Valine, leucine and
isoleucine degradation
- id: R00238_x
name: acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative
genes: AT5G48230
equation: (2) S_Acetyl_45_CoA[x] <=> S_CoA_x[x] + S_Acetoacetyl_45_CoA[x]
subsystem: Benzoate degradation via CoA ligation; Butanoate metabolism; Fatty acid
metabolism; Lysine degradation; Propanoate metabolism; Pyruvate metabolism; Synthesis
and degradation of ketone bodies; Tryptophan metabolism; Valine, leucine and
isoleucine degradation
- id: R00239_c
name: delta 1-pyrroline-5-carboxylate synthetase A / P5CS A (P5CS1)
genes: AT3G55610
equation: S_ATP_c[c] + S_L_45_Glutamate_c[c] => S_ADP_c[c] + S_L_45_Glutamyl_32_5_45_phosphate[c]
subsystem: Urea cycle and metabolism of amino groups
- id: R00243_c
name: glutamate dehydrogenase, putative
genes: AT3G03910 or AT5G07440 or AT5G18170
equation: S_L_45_Glutamate_c[c] + S_NAD_43__c_m_p[c] + S_H2O_c[c] <=> S_2_45_Oxoglutarate_c[c]
+ S_NH3_c[c] + S_NADH_c_m_p[c] + S_H_43__c[c]
subsystem: Arginine and proline metabolism; Glutamate metabolism; Nitrogen metabolism;
Urea cycle and metabolism of amino groups
- id: R00243_m
name: glutamate dehydrogenase, putative, mitochondrial
genes: AT1G51720
equation: S_L_45_Glutamate_m[m] + S_NAD_43__c_m_p[m] + S_H2O_m[m] <=> S_2_45_Oxoglutarate_m[m]
+ S_NH3_m[m] + S_NADH_c_m_p[m] + S_H_43__m[m]
subsystem: Arginine and proline metabolism; Glutamate metabolism; Nitrogen metabolism;
Urea cycle and metabolism of amino groups
- id: R00245_c
name: L-Glutamate 5-semialdehyde:NAD+ oxidoreductase
genes: NF
equation: S_L_45_Glutamate_32_5_45_semialdehyde[c] + S_NAD_43__c_m_p[c] + S_H2O_c[c]
<=> S_L_45_Glutamate_c[c] + S_NADH_c_m_p[c] + S_H_43__c[c]
subsystem: Arginine and proline metabolism
- id: R00251_c
name: 5-oxoprolinase -related protein
genes: AT5G37830
equation: S_ATP_c[c] + S_5_45_Oxoproline[c] + (2) S_H2O_c[c] => S_ADP_c[c] + S_Orthophosphate_c[c]
+ S_L_45_Glutamate_c[c]
subsystem: Glutathione metabolism
- id: R00253_c
name: glutamine synthetase, putative, cytosolic
genes: AT1G48470 or AT3G17820 or AT5G35630 or AT5G37600
equation: S_ATP_c[c] + S_L_45_Glutamate_c[c] + S_NH3_c[c] <=> S_ADP_c[c] + S_Orthophosphate_c[c]
+ S_L_45_Glutamine_c[c]
subsystem: Glutamate metabolism; Nitrogen metabolism
- id: R00253_m
name: glutamate-ammonia ligase (EC 6.3.1.2) precursor, chloroplast (clone lambdaAtgsl1)
(pir||S18600); chloroplast and mitochondrial
genes: AT1G48470 or AT3G17820 or AT5G35630 or AT5G37600
equation: S_ATP_m[m] + S_L_45_Glutamate_m[m] + S_NH3_m[m] <=> S_ADP_m[m] + S_Orthophosphate_m[m]
+ S_L_45_Glutamine_m[m]
subsystem: Glutamate metabolism; Nitrogen metabolism
- id: R00253_p
name: glutamate-ammonia ligase (EC 6.3.1.2) precursor, chloroplast (clone lambdaAtgsl1)
(pir||S18600); chloroplast and mitochondrial
genes: AT1G48470 or AT3G17820 or AT5G35630 or AT5G37600
equation: S_ATP_p[p] + S_L_45_Glutamate_p[p] + S_NH3_p[p] <=> S_ADP_p[p] + S_Orthophosphate_p[p]
+ S_L_45_Glutamine_p[p]
subsystem: Glutamate metabolism; Nitrogen metabolism
- id: R00257_c
name: carbon-nitrogen hydrolase family protein
genes: AT1G55090
equation: S_ATP_c[c] + S_Deamino_45_NAD_43_[c] + S_L_45_Glutamine_c[c] + S_H2O_c[c]
=> S_AMP_c[c] + S_Pyrophosphate_c[c] + S_NAD_43__c_m_p[c] + S_L_45_Glutamate_c[c]
subsystem: Glutamate metabolism; Nicotinate and nicotinamide metabolism
- id: R00258_c
name: alanine aminotransferase, putative
genes: AT1G70580
equation: S_L_45_Alanine_c[c] + S_2_45_Oxoglutarate_c[c] <=> S_Pyruvate_c[c] +
S_L_45_Glutamate_c[c]
subsystem: Alanine and aspartate metabolism; Carbon fixation; Glutamate metabolism
- id: R00258_p
name: alanine aminotransferase, putative
genes: AT1G70580
equation: S_L_45_Alanine_p[p] + S_2_45_Oxoglutarate_p[p] <=> S_Pyruvate_p[p] +
S_L_45_Glutamate_p[p]
subsystem: Alanine and aspartate metabolism; Carbon fixation; Glutamate metabolism
- id: R00259_c
name: arginine biosynthesis protein ArgJ family
genes: AT2G37500
equation: S_Acetyl_45_CoA[c] + S_L_45_Glutamate_c[c] => S_CoA_c[c] + S_N_45_Acetyl_45_L_45_glutamate[c]
subsystem: Urea cycle and metabolism of amino groups
- id: R00261_c
name: glutamate decarboxylase 2 (GAD 2)
genes: AT2G02000 or AT2G16500 or AT3G17760 or AT4G34710 or AT5G17330
equation: S_L_45_Glutamate_c[c] => S_4_45_Aminobutanoate[c] + S_CO2_c[c]
subsystem: Butanoate metabolism; Glutamate metabolism
- id: R00267_m
name: isocitrate dehydrogenase [NADP+], putative mitochondrial
genes: AT1G54340 or AT1G65930 or AT5G14590
equation: S_Isocitrate_m[m] + S_NADP_43_[m] <=> S_2_45_Oxoglutarate_m[m] + S_CO2_m[m]
+ S_NADPH[m] + S_H_43__m[m]
subsystem: Glutathione metabolism; Reductive carboxylate cycle (CO2 fixation)
- id: R00286_c
name: UDP-glucose 6-dehydrogenase, putative
genes: AT1G26570 or AT3G29360 or AT5G15490 or AT5G39320
equation: S_UDP_45_glucose[c] + S_H2O_c[c] + (2) S_NAD_43__c_m_p[c] => S_UDP_45_glucuronate[c]
+ (2) S_NADH_c_m_p[c] + S_H_43__c[c]
subsystem: Nucleotide sugars metabolism; Pentose and glucuronate interconversions;
Starch and sucrose metabolism
- id: R00289_c
name: UDP-glucose pyrophosphorylase
genes: AT5G17310
equation: S_UTP_c[c] + S_D_45_Glucose_32_1_45_phosphate[c] => S_Pyrophosphate_c[c]
+ S_UDP_45_glucose[c]
subsystem: Galactose metabolism; Nucleotide sugars metabolism; Pentose and glucuronate
interconversions; Starch and sucrose metabolism
- id: R00291_c
name: UDP-glucose 4-epimerase / UDP-galactose 4-epimerase / Galactowaldenase
genes: AT1G12780 or AT1G30620 or AT1G63180 or AT1G64440 or AT2G34850 or AT4G23920
equation: S_UDP_45_glucose[c] <=> S_UDP_45_D_45_galactose[c]
subsystem: Galactose metabolism; Nucleotide sugars metabolism
- id: R00308_c
name: glycosyl hydrolase family 17 protein
genes: AT3G57260
equation: S_1_44_3_45_beta_45_D_45_Glucan[c] + S_H2O_c[c] => S_D_45_Glucose[c]
+ S_1_44_3_45_beta_45_D_45_Glucan[c]
subsystem: Starch and sucrose metabolism
- id: R00310_c
name: ferrochelatase II
genes: AT5G26030
equation: S_Protoporphyrin[c] + S_Fe2_43_[c] => S_Heme[c] + (2) S_H_43__c[c]
subsystem: Porphyrin and chlorophyll metabolism
- id: R00316_m
name: acetyl-CoA synthetase (acetate-CoA ligase), putative
genes: AT5G36880
equation: S_ATP_m[m] + S_Acetate_m[m] <=> S_Pyrophosphate_m[m] + S_Acetyl_32_adenylate[m]
subsystem: Pyruvate metabolism
- id: R00328_c
name: apyrase
genes: AT3G04080 or AT5G18280
equation: S_GDP[c] + S_H2O_c[c] => S_GMP[c] + S_Orthophosphate_c[c]
subsystem: Purine metabolism
- id: R00330_c
name: nucleoside diphosphate kinase 1 (NDK1)
genes: AT4G23900 or AT5G63310
equation: S_ATP_c[c] + S_GDP[c] <=> S_ADP_c[c] + S_GTP_c[c]
subsystem: Purine metabolism
- id: R00332_c
name: guanylate kinase, putative
genes: AT3G06200
equation: S_ATP_c[c] + S_GMP[c] <=> S_ADP_c[c] + S_GDP[c]
subsystem: Purine metabolism
- id: R00335_c
name: apyrase
genes: AT3G04080 or AT5G18280
equation: S_GTP_c[c] + S_H2O_c[c] => S_GDP[c] + S_Orthophosphate_c[c]
subsystem: Purine metabolism
- id: R00341_c
name: phosphoenolpyruvate carboxykinase [ATP], putative / PEP carboxykinase, putative
/ PEPCK, putative
genes: AT4G37870 or AT5G65690
equation: S_ATP_c[c] + S_Oxaloacetate_c[c] => S_ADP_c[c] + S_Phosphoenolpyruvate_c[c]
+ S_CO2_c[c]
subsystem: Carbon fixation; Citrate cycle (TCA cycle); Pyruvate metabolism
- id: R00342_c
name: malate dehydrogenase, cytosolic, putative
genes: AT1G04410 or AT1G53240 or AT2G22780 or AT3G15020 or AT3G47520 or AT5G09660
or AT5G43330 or AT5G56720 or AT5G58330
equation: S__40_S_41__45_Malate_c[c] + S_NAD_43__c_m_p[c] <=> S_Oxaloacetate_c[c]
+ S_NADH_c_m_p[c] + S_H_43__c[c]
subsystem: Carbon fixation; Citrate cycle (TCA cycle); Glyoxylate and dicarboxylate
metabolism; Pyruvate metabolism; Reductive carboxylate cycle (CO2 fixation)
- id: R00342_m
name: malate dehydrogenase [NAD], mitochondrial
genes: AT1G04410 or AT1G53240 or AT2G22780 or AT3G15020 or AT3G47520 or AT5G09660
or AT5G43330 or AT5G56720 or AT5G58330
equation: S__40_S_41__45_Malate_m[m] + S_NAD_43__c_m_p[m] <=> S_Oxaloacetate_m[m]
+ S_NADH_c_m_p[m] + S_H_43__m[m]
subsystem: Carbon fixation; Citrate cycle (TCA cycle); Glyoxylate and dicarboxylate
metabolism; Pyruvate metabolism; Reductive carboxylate cycle (CO2 fixation)
- id: R00342_p
name: malate dehydrogenase [NAD], chloroplast (MDH)
genes: AT1G04410 or AT1G53240 or AT2G22780 or AT3G15020 or AT3G47520 or AT5G09660
or AT5G43330 or AT5G56720 or AT5G58330
equation: S__40_S_41__45_Malate_p[p] + S_NAD_43__c_m_p[p] <=> S_Oxaloacetate_p[p]
+ S_NADH_c_m_p[p] + S_H_43__p[p]
subsystem: Carbon fixation; Citrate cycle (TCA cycle); Glyoxylate and dicarboxylate
metabolism; Pyruvate metabolism; Reductive carboxylate cycle (CO2 fixation)
- id: R00342_x
name: malate dehydrogenase, glyoxysomal, putative
genes: AT1G04410 or AT1G53240 or AT2G22780 or AT3G15020 or AT3G47520 or AT5G09660
or AT5G43330 or AT5G56720 or AT5G58330
equation: S__40_S_41__45_Malate_x[x] + S_NAD_43__x[x] <=> S_Oxaloacetate_x[x] +
S_NADH_x[x] + S_H_43__x[x]
subsystem: Carbon fixation; Citrate cycle (TCA cycle); Glyoxylate and dicarboxylate
metabolism; Pyruvate metabolism; Reductive carboxylate cycle (CO2 fixation)
- id: R00343_m
name: malate dehydrogenase [NADP], chloroplast, putative
equation: S__40_S_41__45_Malate_m[m] + S_NADP_43_[m] <=> S_Oxaloacetate_m[m] +
S_NADPH[m] + S_H_43__m[m]
subsystem: Carbon fixation; Pyruvate metabolism
- id: R00343_p
name: malate dehydrogenase [NADP], chloroplast, putative
equation: S__40_S_41__45_Malate_p[p] + S_NADP_43_[p] <=> S_Oxaloacetate_p[p] +
S_NADPH[p] + S_H_43__p[p]
subsystem: Carbon fixation; Pyruvate metabolism
- id: R00344_c
name: pyruvate carboxylase
equation: S_ATP_c[c] + S_Pyruvate_c[c] + S_HCO3_45_[c] => S_ADP_c[c] + S_Orthophosphate_c[c]
+ S_Oxaloacetate_c[c]
subsystem: Pyruvate metabolism
- id: R00345_c
name: phosphoenolpyruvate carboxylase, putative / PEP carboxylase, putative (PPC1)
genes: AT1G53310 or AT1G68750 or AT2G42600 or AT3G14940
equation: S_Orthophosphate_c[c] + S_Oxaloacetate_c[c] <=> S_H2O_c[c] + S_Phosphoenolpyruvate_c[c]
+ S_CO2_c[c]
subsystem: Carbon fixation; Pyruvate metabolism; Reductive carboxylate cycle (CO2
fixation)
- id: R00351_m
name: citrate synthase, mitochondrial, putative
equation: S_Acetyl_45_CoA[m] + S_H2O_m[m] + S_Oxaloacetate_m[m] => S_Citrate_m[m]
+ S_CoA_m[m]
subsystem: Citrate cycle (TCA cycle); Glyoxylate and dicarboxylate metabolism
- id: R00351_x
name: citrate synthase, glyoxysomal, putative
equation: S_Acetyl_45_CoA[x] + S_H2O_x[x] + S_Oxaloacetate_x[x] => S_Citrate_x[x]
+ S_CoA_x[x]
subsystem: Citrate cycle (TCA cycle); Glyoxylate and dicarboxylate metabolism
- id: R00352_c
name: ATP-citrate synthase, putative / ATP-citrate (pro-S-)-lyase, putative / citrate
cleavage enzyme, putative
genes: AT1G09430 or AT1G10670 or AT1G60810 or AT3G06650 or AT5G49460
equation: S_ATP_c[c] + S_Citrate_c[c] + S_CoA_c[c] => S_ADP_c[c] + S_Orthophosphate_c[c]
+ S_Acetyl_45_CoA[c] + S_Oxaloacetate_c[c]
subsystem: Citrate cycle (TCA cycle); Reductive carboxylate cycle (CO2 fixation)
- id: R00355_c
name: aspartate aminotransferase, cytoplasmic isozyme 2 / transaminase A (ASP4)
genes: AT1G62800 or AT2G30970 or AT4G31990 or AT5G11520 or AT5G19550
equation: S_L_45_Aspartate_c[c] + S_2_45_Oxoglutarate_c[c] <=> S_Oxaloacetate_c[c]
+ S_L_45_Glutamate_c[c]
subsystem: Alanine and aspartate metabolism; Carbon fixation; Glutamate metabolism
- id: R00355_m
name: aspartate aminotransferase, mitochondrial / transaminase A (ASP1)
genes: AT1G62800 or AT2G30970 or AT4G31990 or AT5G11520 or AT5G19550
equation: S_L_45_Aspartate_m[m] + S_2_45_Oxoglutarate_m[m] <=> S_Oxaloacetate_m[m]
+ S_L_45_Glutamate_m[m]
subsystem: Alanine and aspartate metabolism; Carbon fixation; Glutamate metabolism
- id: R00355_p
name: aspartate aminotransferase, chloroplast (transaminase A/Asp3)
genes: AT1G62800 or AT2G30970 or AT4G31990 or AT5G11520 or AT5G19550
equation: S_L_45_Aspartate_p[p] + S_2_45_Oxoglutarate_p[p] <=> S_Oxaloacetate_p[p]
+ S_L_45_Glutamate_p[p]
subsystem: Alanine and aspartate metabolism; Carbon fixation; Glutamate metabolism
- id: R00369_c
name: alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase,
putative / AGT, putative
genes: AT4G39660
equation: S_L_45_Alanine_c[c] + S_Glyoxylate[c] <=> S_Pyruvate_c[c] + S_Glycine_c[c]
subsystem: Alanine and aspartate metabolism; Glycine, serine and threonine metabolism
- id: R00372_x
name: alanine transaminase
equation: S_Glycine_x[x] + S_2_45_Oxoglutarate_x[x] <=> S_Glyoxylate[x] + S_L_45_Glutamate_x[x]
subsystem: Glycine, serine and threonine metabolism, photorespiration
- id: R00376N_c
equation: S_dGTP_c[c] + S_DNA[c] <=> S_Pyrophosphate_c[c] + S_DNA[c]
subsystem: Purine metabolism
- id: R00405_m
name: succinyl-CoA synthetase
genes: AT2G20420 or AT5G08300 or AT5G23250
equation: S_ATP_m[m] + S_Succinate_m[m] + S_CoA_m[m] <=> S_ADP_m[m] + S_Orthophosphate_m[m]
+ S_Succinyl_45_CoA[m]
subsystem: Citrate cycle (TCA cycle)
- id: R00408_c
name: succinate dehydrogenase
equation: S_Succinate_c[c] + S_FAD[c] <=> S_FADH2[c] + S_Fumarate[c]
subsystem: Citrate cycle (TCA cycle)
- id: R00408_m
name: succinate dehydrogenase
equation: S_Succinate_m[m] + S_FAD[m] <=> S_FADH2[m] + S_Fumarate[m]
subsystem: Citrate cycle (TCA cycle)
- id: R00415_c
name: UDP-N-acetylglucosamine pyrophosphorylase-related
genes: AT1G31070
equation: S_UTP_c[c] + S_N_45_Acetyl_45_D_45_glucosamine_32_1_45_phosphate[c] <=>
S_Pyrophosphate_c[c] + S_UDP_45_N_45_acetyl_45_D_45_glucosamine[c]
subsystem: Aminosugars metabolism
- id: R00416_c
name: UDP-N-acetylglucosamine pyrophosphorylase-related
genes: AT1G31070
equation: S_UTP_c[c] + S_N_45_Acetyl_45_alpha_45_D_45_glucosamine_32_1_45_phosphate[c]
<=> S_Pyrophosphate_c[c] + S_UDP_45_N_45_acetyl_45_D_45_glucosamine[c]
subsystem: Aminosugars metabolism
- id: R00425_c
name: riboflavin biosynthesis protein, putative
genes: AT2G22450 or AT5G59750
equation: S_GTP_c[c] + (3) S_H2O_c[c] => S_Formate[c] + S_2_44_5_45_Diamino_45_6_45_hydroxy_45_4_45__40_5_39__45_phosphoribosylamino_41_pyrimidine[c]
+ S_Pyrophosphate_c[c]
subsystem: Riboflavin metabolism
- id: R00426_c
name: inosine triphosphate pyrophosphatase, putative, HAM1 family protein
genes: AT4G13720
equation: S_GTP_c[c] + S_H2O_c[c] => S_GMP[c] + S_Pyrophosphate_c[c]
subsystem: Purine metabolism
- id: R00428_c
name: GTP cyclohydrolase I
genes: AT3G07270
equation: S_GTP_c[c] + S_H2O_c[c] => S_Formamidopyrimidine_32_nucleoside_32_triphosphate[c]
subsystem: Folate biosynthesis
- id: R00429_c
name: RelA/SpoT protein, putative (RSH1)
equation: S_ATP_c[c] + S_GTP_c[c] => S_AMP_c[c] + S_Guanosine_32_3_39__45_diphosphate_32_5_39__45_triphosphate[c]
subsystem: Purine metabolism
- id: R00434_c
name: adenylate cyclase 6
genes: AT2G11890
equation: S_GTP_c[c] => S_3_39__44_5_39__45_Cyclic_32_GMP[c] + S_Pyrophosphate_c[c]
subsystem: Purine metabolism
- id: R00451_c
name: diaminopimelate decarboxylase, putative / DAP carboxylase, putative
genes: AT3G14390 or AT5G11880
equation: S_meso_45_2_44_6_45_Diaminoheptanedioate[c] => S_L_45_Lysine_c[c] + S_CO2_c[c]
subsystem: Lysine biosynthesis
- id: R00472_x
name: malate synthase, putative
genes: AT5G03860
equation: S_Acetyl_45_CoA[x] + S_H2O_x[x] + S_Glyoxylate[x] <=> S__40_S_41__45_Malate_x[x]
+ S_CoA_x[x]
subsystem: Glyoxylate and dicarboxylate metabolism; Pyruvate metabolism
- id: R00475_x
name: (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative
/ short chain alpha-hydroxy acid oxidase, putative
genes: AT3G14415 or AT4G18360
equation: S_Glycolate_x[x] + S_Oxygen_x[x] => S_Glyoxylate[x] + S_H2O2_x[x]
subsystem: Glyoxylate and dicarboxylate metabolism
- id: R00479_x
name: isocitrate lyase, putative
genes: AT3G21720
equation: S_Isocitrate_x[x] => S_Succinate_x[x] + S_Glyoxylate[x]
subsystem: Glyoxylate and dicarboxylate metabolism
- id: R00480_c
name: bifunctional aspartate kinase/homoserine dehydrogenase / AK-HSDH
genes: AT1G31230 or AT4G19710
equation: S_ATP_c[c] + S_L_45_Aspartate_c[c] <=> S_ADP_c[c] + S_4_45_Phospho_45_L_45_aspartate[c]
subsystem: Glycine, serine and threonine metabolism; Lysine biosynthesis
- id: R00481_c
name: L-aspartate oxidase family
genes: AT5G14760
equation: S_L_45_Aspartate_c[c] + S_Oxygen_c[c] => S_Iminoaspartate[c] + S_H2O2_c[c]
subsystem: Nicotinate and nicotinamide metabolism
- id: R00485_c
name: asparaginase
equation: S_L_45_Asparagine_c[c] + S_H2O_c[c] => S_L_45_Aspartate_c[c] + S_NH3_c[c]
subsystem: Alanine and aspartate metabolism; Cyanoamino acid metabolism; Nitrogen
metabolism
- id: R00489_c
name: glutamate decarboxylase 2 (GAD 2)
equation: S_L_45_Aspartate_c[c] => S_beta_45_Alanine[c] + S_CO2_c[c]
subsystem: Alanine and aspartate metabolism; beta-Alanine metabolism