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reactions.yaml
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reactions.yaml
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- id: 25DHGR
name: 25DHGR
genes: Cbei_3512 or Cbei_3724
equation: e2maa[c] + h_c[c] + nadph[c] <=> emhbut[c] + nadp[c]
subsystem: Unassigned
- id: 2ALKRED
name: 2ALKRED
genes: Cbei_0379
equation: hxdcal[c] + nadp[c] <=> 2thexdec[c] + h_c[c] + nadph[c]
subsystem: Sphingolipid metabolism
- id: 2AMACHYD
name: 2AMACHYD
equation: 2amac[c] + h2o_c[c] => nh4_c[c] + pyr[c]
subsystem: Glycine, serine and threonine metabolism
- id: 2DDGLCNex
name: 2DDGLCNex
genes: Cbei_4007 or Cbei_2459
equation: 2ddglcn_e[e] + h_e[e] => 2ddglcn_c[c] + h_c[c]
subsystem: Transport Reaction
- id: 2HBO
name: 2HBO
genes: Cbei_2789 or Cbei_4903
equation: 2hb[c] + nad[c] <=> 2obut[c] + h_c[c] + nadh[c]
subsystem: Propanoate metabolism
- id: 2INST
name: 2INST
genes: Cbei_4882 or Cbei_4711
equation: 2ins[c] + gln_L[c] => 2kgtmt[c] + scyins[c]
subsystem: Streptomycin biosynthesis
- id: 3BUTCOAI
name: 3BUTCOAI
genes: Cbei_2100
equation: 4hbcoa[c] => 3butcoa[c] + h2o_c[c]
subsystem: Butanoate metabolism
- id: 3BUTISOM
name: 3BUTISOM
genes: Cbei_2100
equation: 3butcoa[c] => b2coa[c]
subsystem: Butanoate metabolism
- id: 3HBCD
name: 3HBCD
genes: Cbei_2034 or Cbei_4544
equation: 3hbcoa_R[c] <=> b2coa[c] + h2o_c[c]
subsystem: Butanoate metabolism
- id: 3HXKYNDCL
name: 3HXKYNDCL
genes: Cbei_4408
equation: h_c[c] + hLkynr[c] => 3hxkynam[c] + co2_c[c]
subsystem: Tryptophan metabolism
- id: 3ISPD
name: 3ISPD
genes: Cbei_0216
equation: hicit[c] + nad[c] <=> 2oxoadp[c] + co2_c[c] + nadh[c]
subsystem: Lysine biosynthesis
- id: 3OACPRD
name: 3OACPRD
genes: Cbei_1071
equation: 3hmbcoa[c] + nad[c] <=> 2maacoa[c] + h_c[c] + nadh[c]
subsystem: Valine, leucine and isoleucine degradation
- id: 3SALATA
name: 3SALATA
genes: Cbei_4316 or Cbei_4794
equation: 3sala[c] + akg[c] + h_c[c] <=> 3snpyr[c] + glu_L[c]
subsystem: Cysteine and methionine metabolism
- id: 4ABZex
name: 4ABZex
equation: 4abz_e[e] + h_e[e] => 4abz_c[c] + h_c[c]
subsystem: Transport Reaction
- id: 4HTHRS
name: 4HTHRS
genes: Cbei_1293
equation: h2o_c[c] + phthr[c] => 4hthr[c] + pi_c[c]
subsystem: Vitamin B6 metabolism
- id: 5C2HI
name: 5C2HI
genes: Cbei_4954
equation: cmethydmuc[c] => h_c[c] + opet[c]
subsystem: Tyrosine metabolism
- id: 6PGALSZ
name: 6PGALSZ
genes: Cbei_1477
equation: h2o_c[c] + lac6p[c] <=> dgal6p[c] + glc_D_c[c]
subsystem: Galactose metabolism
- id: 6PHBG
name: 6PHBG
genes: Cbei_4805 or Cbei_0700
equation: h2o_c[c] + salc6p[c] => 2hymeph[c] + g6p[c]
subsystem: Glycolysis / Gluconeogenesis
- id: A3H6PFL
name: A3H6PFL
genes: Cbei_4647
equation: fald[c] + (4) h_c[c] + ru5p_D[c] <=> arabhp[c]
subsystem: Pentose and glucuronate interconversions
- id: AAFH
name: AAFH
genes: Cbei_2360
equation: arab[c] + (3) h2o_c[c] => (3) arab_L_c[c]
subsystem: Amino sugar and nucleotide sugar metabolism
- id: AATA
name: AATA
genes: Cbei_2083
equation: 2oxoadp[c] + glu_L[c] <=> L2aadp[c] + akg[c]
subsystem: Lysine biosynthesis /// Lysine degradation
- id: AB6PGH
name: AB6PGH
genes: Cbei_4805 or Cbei_0701
equation: arbt6p[c] + h2o_c[c] => g6p[c] + hqn[c]
subsystem: Glycolysis / Gluconeogenesis
- id: ABHYDFLD
name: ABHYDFLD
genes: Cbei_3238
equation: 5odhf2a[c] + h2o_c[c] <=> 3oxoadp[c] + h_c[c]
subsystem: Benzoate degradation via hydroxylation
- id: ABTA
name: ABTA
genes: Cbei_4347
equation: 4abut[c] + akg[c] => glu_L[c] + sucsal[c]
subsystem: Butanoate metabolism
- id: ABUTD
name: ABUTD
genes: Cbei_0729
equation: 4abutn[c] + h2o_c[c] + nad[c] => 4abut[c] + (2) h_c[c] + nadh[c]
subsystem: Arginine and proline metabolism /// beta-Alanine metabolism
- id: ACAAPL
name: ACAAPL
genes: Cbei_1268
equation: adcobhex[c] + amprop[c] + atp[c] => adocbi[c] + adp[c] + (2) h_c[c] +
pi_c[c]
subsystem: Porphyrin and chlorophyll metabolism
- id: ACACT1
name: ACACT1
genes: Cbei_0411 or Cbei_3630
equation: (2) accoa[c] <=> aacoa[c] + coa[c]
subsystem: Benzoate degradation via CoA ligation /// Butanoate metabolism /// Fatty
acid metabolism /// Lysine degradation /// Propanoate metabolism /// Pyruvate
metabolism /// Synthesis and degradation of ketone bodies /// Tryptophan metabolism
/// Valine, leucine and isoleucine degradation
- id: ACACT2
name: ACACT2
genes: Cbei_0411 or Cbei_3630
equation: accoa[c] + btcoa[c] <=> 3ohcoa[c] + coa[c]
subsystem: Fatty acid metabolism
- id: ACALD
name: ACALD
genes: Cbei_0305 or Cbei_1722 or Cbei_2181
equation: acald[c] + coa[c] + nad[c] <=> accoa[c] + h_c[c] + nadh[c]
subsystem: Pyruvate metabolism
- id: ACBIPGT
name: ACBIPGT
genes: Cbei_1264
equation: adocbip[c] + gtp[c] + h_c[c] => agdpcbi[c] + ppi[c]
subsystem: Porphyrin and chlorophyll metabolism
- id: ACBIPGT2
name: ACBIPGT2
genes: Cbei_1264
equation: adocbi[c] + gtp[c] => adocbip[c] + gdp[c] + h_c[c]
subsystem: Porphyrin and chlorophyll metabolism
- id: ACCOAC
name: ACCOAC
genes: Cbei_1077 or Cbei_1075 or Cbei_1073 or Cbei_2754
equation: accoa[c] + atp[c] + hco3_c[c] => adp[c] + h_c[c] + malcoa[c] + pi_c[c]
subsystem: Propanoate metabolism /// Pyruvate metabolism
- id: ACCOACDL
name: ACCOACDL
genes: Cbei_1077 or Cbei_2754
equation: accoa[c] + carbbiocarbcprot[c] <=> biocprot[c] + malcoa[c]
subsystem: Fatty acid biosynthesis
- id: ACCOAT
name: ACCOAT
genes: Cbei_2103
equation: 4ohbut[c] + accoa[c] => 4hbcoa[c] + ac_c[c]
subsystem: Unassigned
- id: ACETONEex
name: ACETONEex
equation: acetone_c[c] => acetone_e[e]
subsystem: Transport Reaction
- id: ACGAMK
name: ACGAMK
genes: Cbei_4536
equation: acgam_c[c] + atp[c] => acgam6p[c] + adp[c] + h_c[c]
subsystem: Amino sugar and nucleotide sugar metabolism
- id: ACGAMpts
name: ACGAMpts
genes: Cbei_4532
equation: acgam_e[e] + pep[c] => acgam6p[c] + pyr[c]
subsystem: Transport Reaction
- id: ACGK
name: ACGK
genes: Cbei_4519
equation: acglu[c] + atp[c] => acg5p[c] + adp[c]
subsystem: Arginine and proline metabolism
- id: ACGS
name: ACGS
genes: Cbei_4518
equation: accoa[c] + glu_L[c] => acglu[c] + coa[c] + h_c[c]
subsystem: Arginine and proline metabolism
- id: ACHBS
name: ACHBS
genes: Cbei_0217
equation: 2obut[c] + h_c[c] + pyr[c] => 2ahbut[c] + co2_c[c]
subsystem: Valine, Leucine, and Isoleucine Metabolism
- id: ACK
name: ACK
genes: Cbei_1165
equation: actp[c] + adp[c] <=> ac_c[c] + atp[c]
subsystem: Pyruvate metabolism
- id: ACLS
name: ACLS
genes: Cbei_0217 or Cbei_2647 or Cbei_2646 or Cbei_0212
equation: h_c[c] + (2) pyr[c] => alac_S[c] + co2_c[c]
subsystem: Pantothenate and CoA biosynthesis /// C5-Branched dibasic acid metabolism
- id: ACNAM9PL
name: ACNAM9PL
genes: Cbei_4278
equation: acmanap[c] + h2o_c[c] + pep[c] <=> acnamp[c] + pi_c[c]
subsystem: Amino sugar and nucleotide sugar metabolism
- id: ACNMCTDT
name: ACNMCTDT
genes: Cbei_4281
equation: acnmt[c] + ctp[c] + h_c[c] <=> cmpacnmt[c] + ppi[c]
subsystem: Amino sugar and nucleotide sugar metabolism
- id: ACOAD1
name: ACOAD1
genes: Cbei_2883 or Cbei_4542
equation: b2coa[c] + fdxox[c] + (2) nadh[c] => btcoa[c] + fdxrd[c] + (2) nad[c]
subsystem: Butanoate metabolism
- id: ACOAD10
name: ACOAD10
genes: Cbei_0322
equation: 2mbcoa[c] + fad[c] => 2mb2coa[c] + fadh2[c]
subsystem: Valine, leucine and isoleucine degradation
- id: ACOATA
name: ACOATA
genes: Cbei_1068
equation: ACP[c] + accoa[c] => acACP[c] + coa[c]
subsystem: Fatty acid biosynthesis
- id: ACODA
name: ACODA
genes: Cbei_0145
equation: acorn[c] + h2o_c[c] => ac_c[c] + orn[c]
subsystem: Arginine and proline metabolism
- id: ACONT
name: ACONT
genes: Cbei_0070
equation: cit_c[c] <=> icit[c]
subsystem: Citrate cycle (TCA cycle) /// Glyoxylate and dicarboxylate metabolism
- id: ACOTA
name: ACOTA
genes: Cbei_3891 or Cbei_4520
equation: acorn[c] + akg[c] <=> acg5sa[c] + glu_L[c]
subsystem: Arginine and proline metabolism
- id: ACYP
name: ACYP
genes: Cbei_4233
equation: 13dpg[c] + h2o_c[c] => 3pg[c] + h_c[c] + pi_c[c]
subsystem: Pyruvate metabolism
- id: ACYP_2
name: ACYP_2
genes: Cbei_4233
equation: actp[c] + h2o_c[c] => ac_c[c] + h_c[c] + pi_c[c]
subsystem: Pyruvate metabolism
- id: ACex
name: ACex
equation: ac_c[c] + h_c[c] <=> ac_e[e] + h_e[e]
subsystem: Transport Reaction
- id: ADA
name: ADA
genes: Cbei_0513
equation: adn[c] + h_c[c] + h2o_c[c] => ins[c] + nh4_c[c]
subsystem: Purine metabolism
- id: ADAHTA
name: ADAHTA
genes: Cbei_1792
equation: akg[c] + n6all26d[c] <=> glu_L[c] + nal2a6o[c]
subsystem: Lysine biosynthesis
- id: ADC
name: ADC
genes: Cbei_3835
equation: acac[c] + h_c[c] => acetone_c[c] + co2_c[c]
subsystem: Propanoate metabolism /// Synthesis and degradation of ketone bodies
- id: ADCL
name: ADCL
genes: Cbei_4118 or Cbei_1111
equation: 4adcho[c] => 4abz_c[c] + h_c[c] + pyr[c]
subsystem: Folate biosynthesis
- id: ADCPS2
name: ADCPS2
genes: Cbei_1268
equation: adcobhex[c] + applp[c] + atp[c] => adocbip[c] + adp[c] + h_c[c] + pi_c[c]
subsystem: Porphyrin and chlorophyll metabolism
- id: ADCS
name: ADCS
genes: Cbei_4119 or Cbei_4120
equation: chor[c] + gln_L[c] => 4adcho[c] + glu_L[c]
subsystem: Folate biosynthesis
- id: ADCYRS
name: ADCYRS
genes: Cbei_0942 or Cbei_1272
equation: adcobdam[c] + (4) atp[c] + (4) gln_L[c] + (4) h2o_c[c] => adcobhex[c]
+ (4) adp[c] + (4) glu_L[c] + (4) h_c[c] + (4) pi_c[c]
subsystem: Porphyrin and chlorophyll metabolism
- id: ADD
name: ADD
genes: Cbei_1277 or Cbei_1975
equation: ade[c] + h_c[c] + h2o_c[c] => hxan[c] + nh4_c[c]
subsystem: Purine metabolism
- id: ADK1
name: ADK1
genes: Cbei_0172
equation: amp[c] + atp[c] => (2) adp[c]
subsystem: Purine metabolism
- id: ADK2
name: ADK2
genes: Cbei_0172
equation: amp[c] + pppi[c] <=> adp[c] + ppi[c]
subsystem: Purine metabolism
- id: ADMDC
name: ADMDC
genes: Cbei_4412
equation: amet[c] + h_c[c] <=> ametam[c] + co2_c[c]
subsystem: Cysteine and methionine metabolism /// Arginine and proline metabolism
- id: ADMHAH
name: ADMHAH
genes: Cbei_1386
equation: h2o_c[c] + n6all26d[c] <=> 26dap_LL[c] + ac_c[c]
subsystem: Lysine biosynthesis
- id: ADNCYC
name: ADNCYC
genes: Cbei_4540
equation: atp[c] => camp[c] + ppi[c]
subsystem: Purine metabolism
- id: ADOCBIK
name: ADOCBIK
genes: Cbei_1264
equation: adocbi[c] + atp[c] => adocbip[c] + adp[c] + h_c[c]
subsystem: Porphyrin and chlorophyll metabolism
- id: ADOCBLS
name: ADOCBLS
genes: Cbei_1265
equation: agdpcbi[c] + rdmbzi[c] => adocbl[c] + gmp[c] + h_c[c]
subsystem: Porphyrin and chlorophyll metabolism
- id: ADPRDP
name: ADPRDP
genes: Cbei_2546
equation: adprib[c] + h2o_c[c] => amp[c] + (2) h_c[c] + r5p[c]
subsystem: Purine metabolism
- id: ADPT
name: ADPT
genes: Cbei_1539 or Cbei_4228
equation: amp[c] + ppi[c] <=> ade[c] + prpp[c]
subsystem: Purine metabolism
- id: ADSK
name: ADSK
genes: Cbei_4186
equation: aps[c] + atp[c] => adp[c] + h_c[c] + paps[c]
subsystem: Purine metabolism /// Sulfur metabolism
- id: ADSL1
name: ADSL1
genes: Cbei_1221
equation: dcamp[c] => amp[c] + fum[c]
subsystem: Alanine, aspartate and glutamate metabolism /// Purine metabolism
- id: ADSL2
name: ADSL2
genes: Cbei_1221
equation: 25aics[c] => aicar[c] + fum[c]
subsystem: Purine metabolism
- id: ADSR
name: ADSR
genes: Cbei_4189
equation: amp[c] + fad[c] + (2) h_c[c] + so3[c] <=> aps[c] + fadh2[c]
subsystem: Sulfur metabolism
- id: ADSS
name: ADSS
genes: Cbei_2082 or Cbei_5074
equation: asp_L[c] + gtp[c] + imp[c] => dcamp[c] + gdp[c] + (2) h_c[c] + pi_c[c]
subsystem: Alanine, aspartate and glutamate metabolism /// Purine metabolism
- id: AEPPAT
name: AEPPAT
genes: Cbei_4336
equation: 2ameph[c] + (2) h_c[c] + pyr[c] <=> ala_L[c] + phosnacet[c]
subsystem: Phosphonate and phosphinate metabolism
- id: AGAT2_CB
name: AGAT2_CB
equation: 1ag3p_CB[c] + (0.12) c17cycACP[c] + (0.05) c19cycACP[c] + (0.19) hdACP[c]
+ (0.03) myrsACP[c] + (0.04) olACP[c] + (0.54) palmACP[c] + (0.03) stracp[c]
=> ACP[c] + pa_CB[c]
subsystem: Fatty acid biosynthesis (lumped)
- id: AGDC
name: AGDC
genes: Cbei_4564
equation: acgam6p[c] + h2o_c[c] => ac_c[c] + gam6p[c]
subsystem: Amino sugar and nucleotide sugar metabolism
- id: AGHY
name: AGHY
genes: Cbei_4573
equation: arog_L[c] => co2_c[c] + h2o_c[c] + phe_L[c]
subsystem: Phenylalanine, tyrosine and tryptophan biosynthesis
- id: AGMIH
name: AGMIH
genes: Cbei_1922
equation: agm[c] + h2o_c[c] => carbputr[c] + nh4_c[c]
subsystem: Arginine and proline metabolism
- id: AGPR
name: AGPR
genes: Cbei_4517
equation: acg5sa[c] + nadp[c] + pi_c[c] <=> acg5p[c] + h_c[c] + nadph[c]
subsystem: Arginine and proline metabolism
- id: AHBNOOR
name: AHBNOOR
genes: Cbei_0218
equation: 2ahbut[c] + h_c[c] => 3h3mop[c]
subsystem: Valine, leucine and isoleucine biosynthesis
- id: AHBPL
name: AHBPL
genes: Cbei_2730 or Cbei_2868 or Cbei_2647 or Cbei_0212
equation: 2obut[c] + hethmpp[c] <=> 2ahbut[c] + thmpp[c]
subsystem: Valine, leucine and isoleucine biosynthesis
- id: AHC
name: AHC
genes: Cbei_2441
equation: ahcys[c] + h2o_c[c] => adn[c] + hcys_L[c]
subsystem: Cysteine and methionine metabolism
- id: AHCYSNS
name: AHCYSNS
genes: Cbei_4917
equation: ahcys[c] + h2o_c[c] => ade[c] + rhcys[c]
subsystem: Cysteine and methionine metabolism
- id: AHDHPT
name: AHDHPT
genes: Cbei_2540
equation: 25diamoxpyrm[c] => ahdt[c] + h2o_c[c]
subsystem: Folate biosynthesis
- id: AHSAL
name: AHSAL
genes: Cbei_0766 or Cbei_3543
equation: achms[c] + trdrd[c] + tsul[c] => ac_c[c] + h_c[c] + hcys_L[c] + so3[c]
+ trdox[c]
subsystem: Cysteine and methionine metabolism
- id: AHSERL
name: AHSERL
genes: Cbei_3543 or Cbei_0766 or Cbei_0609
equation: achms[c] + ch4s[c] => ac_c[c] + h_c[c] + met_L[c]
subsystem: Cysteine and methionine metabolism
- id: AHSERL2
name: AHSERL2
genes: Cbei_0766 or Cbei_3543 or Cbei_0609 or Cbei_0622
equation: achms[c] + h2s[c] => ac_c[c] + h_c[c] + hcys_L[c]
subsystem: Cysteine and methionine metabolism
- id: AICART
name: AICART
genes: Cbei_1059 or Cbei_3561
equation: 10fthf[c] + aicar[c] => fprica[c] + thf[c]
subsystem: One carbon pool by folate
- id: AICL
name: AICL
genes: Cbei_4408
equation: 5amimcarb[c] + h_c[c] => 5amimid[c] + co2_c[c]
subsystem: Purine metabolism
- id: AIRC
name: AIRC
genes: Cbei_1054
equation: 5aizc[c] + h_c[c] <=> air[c] + co2_c[c]
subsystem: Purine metabolism
- id: ALAALA
name: ALAALA
genes: Cbei_0581
equation: (2) ala_D[c] + atp[c] => adp[c] + alaala[c] + h_c[c] + pi_c[c]
subsystem: D-Alanine metabolism /// Peptidoglycan biosynthesis
- id: ALAR
name: ALAR
genes: Cbei_2758 or Cbei_4113 or Cbei_0863 or Cbei_0731 or Cbei_0234 or Cbei_2457
or Cbei_0047 or Cbei_4422 or Cbei_1831 or Cbei_4148
equation: ala_L[c] <=> ala_D[c]
subsystem: D-Alanine metabolism
- id: ALATA_D
name: ALATA_D
genes: Cbei_2762
equation: akg[c] + ala_D[c] <=> glu_D[c] + pyr[c]
subsystem: D-Alanine metabolism
- id: ALCD19
name: ALCD19
genes: Cbei_4552 or Cbei_4933
equation: glyc[c] + nad[c] => glyald[c] + h_c[c] + nadh[c]
subsystem: Glycerolipid metabolism
- id: ALCD19y
name: ALCD19y
genes: Cbei_0544
equation: glyc[c] + nadp[c] => glyald[c] + h_c[c] + nadph[c]
subsystem: Glycerolipid metabolism
- id: ALCD2
name: ALCD2
genes: Cbei_0305
equation: etoh_c[c] + nad[c] <=> acald[c] + h_c[c] + nadh[c]
subsystem: Glycolysis / Gluconeogenesis
- id: ALCD22_L
name: ALCD22_L
genes: Cbei_1464
equation: lald_L[c] + nad[c] => h_c[c] + mthgxl[c] + nadh[c]
subsystem: Pyruvate metabolism
- id: ALCDFE
name: ALCDFE
genes: Cbei_4933
equation: h_c[c] + nadh[c] + sucsal[c] <=> 4ohbut[c] + nad[c]
subsystem: Butanoate metabolism
- id: ALDD2x
name: ALDD2x
genes: Cbei_0727 or Cbei_1953
equation: acald[c] + h2o_c[c] + nad[c] => ac_c[c] + (2) h_c[c] + nadh[c]
subsystem: Glycolysis / Gluconeogenesis /// Pyruvate metabolism
- id: ALLTN
name: ALLTN
genes: Cbei_1970
equation: alltn[c] + h2o_c[c] <=> alltt[c] + h_c[c]
subsystem: Purine metabolism
- id: ALMM
name: ALMM
genes: Cbei_0218
equation: alac_S[c] + h_c[c] => 3h3mob[c]
subsystem: Valine, leucine and isoleucine biosynthesis
- id: ALPHNH
name: ALPHNH
genes: Cbei_2756 or Cbei_2757
equation: allphn[c] + (3) h_c[c] + h2o_c[c] => (2) co2_c[c] + (2) nh4_c[c]
subsystem: Arginine and proline metabolism /// Atrazine degradation
- id: ALPL
name: ALPL
genes: Cbei_2730 or Cbei_2868 or Cbei_2647 or Cbei_0212
equation: alac_S[c] + thmpp[c] <=> hethmpp[c] + pyr[c]
subsystem: Butanoate metabolism
- id: ALR2
name: ALR2
genes: Cbei_2421
equation: h_c[c] + mthgxl[c] + nadph[c] <=> acetol[c] + nadp[c]
subsystem: Glycine, serine and threonine metabolism
- id: ALTRH
name: ALTRH
genes: Cbei_1839
equation: altrn[c] => 2ddglcn_c[c] + h2o_c[c]
subsystem: Pentose and glucuronate interconversions
- id: AMAA
name: AMAA
genes: Cbei_4698 or Cbei_4699
equation: acmama[c] + h2o_c[c] => acmam[c] + ala_L[c]
subsystem: Peptidoglycan biosynthesis
- id: AMACAPT
name: AMACAPT
genes: Cbei_4410
equation: 15dap[c] + ametam[c] => 5mta[c] + aminopropylcdvn[c] + h_c[c]
subsystem: Glutathione metabolism
- id: AMALT1
name: AMALT1
genes: Cbei_0864 or Cbei_0233
equation: malt_c[c] + malttr[c] => glc_D_c[c] + maltttr[c]
subsystem: Starch and sucrose metabolism
- id: AMAOT
name: AMAOT
genes: Cbei_4347
equation: 8aonn[c] + amet[c] => amob[c] + dann[c]
subsystem: Biotin metabolism
- id: AMAPE
name: AMAPE
genes: Cbei_1917
equation: Nactetyl6p[c] + h2o_c[c] <=> acgam6p[c] + (2) h_c[c] + lac_D_c[c]
subsystem: Amino sugar and nucleotide sugar metabolism
- id: AMID
name: AMID
genes: Cbei_2128
equation: 4gudbd[c] + h2o_c[c] => 4gudbutn[c] + nh4_c[c]
subsystem: Arginine and proline metabolism
- id: AMID3
name: AMID3
genes: Cbei_2128
equation: h2o_c[c] + iad[c] => ind3ac_c[c] + nh4_c[c]
subsystem: Tryptophan metabolism
- id: AMID5
name: AMID5
genes: Cbei_2128 or Cbei_2077
equation: aa[c] + h_c[c] + h2o_c[c] => acryl[c] + nh4_c[c]
subsystem: Styrene degradation
- id: AMIDOT
name: AMIDOT
genes: Cbei_2128
equation: anNH[c] + h2o_c[c] => archdnt[c] + etha[c]
subsystem: Unassigned
- id: AMMQT8_2
name: AMMQT8_2
genes: Cbei_2963 or Cbei_3481
equation: (2) 2dmmq8[c] + (2) amet[c] => (2) ahcys[c] + (2) h_c[c] + (2) mqn8[c]
subsystem: Ubiquinone and other terpenoid-quinone biosynthesis
- id: AMPTASECG
name: AMPTASECG
genes: Cbei_2737
equation: cgly[c] + h2o_c[c] => cys_L[c] + gly[c]
subsystem: Glutathione metabolism
- id: ANM9PS
name: ANM9PS
genes: Cbei_4278
equation: aman6p[c] + h_c[c] + h2o_c[c] + pep[c] <=> anm9p[c] + pi_c[c]
subsystem: Amino sugar and nucleotide sugar metabolism
- id: ANPRT
name: ANPRT
genes: Cbei_1751
equation: anth[c] + prpp[c] => ppi[c] + pran[c]
subsystem: Phenylalanine, tyrosine and tryptophan biosynthesis
- id: ANS
name: ANS
genes: Cbei_1749 or Cbei_1750 or Cbei_4119
equation: chor[c] + gln_L[c] => anth[c] + glu_L[c] + h_c[c] + pyr[c]
subsystem: Phenylalanine, tyrosine and tryptophan biosynthesis
- id: ANS2
name: ANS2
genes: Cbei_1749 or Cbei_1750
equation: chor[c] + nh4_c[c] => anth[c] + h_c[c] + h2o_c[c] + pyr[c]
subsystem: Phenylalanine, tyrosine and tryptophan biosynthesis
- id: APAAH
name: APAAH
genes: Cbei_4352
equation: amnpentam[c] + h2o_c[c] <=> amnpent[c] + nh4_c[c]
subsystem: Lysine degradation
- id: APAT2
name: APAT2
genes: Cbei_4347
equation: akg[c] + ala_B[c] <=> glu_L[c] + msa[c]
subsystem: beta-Alanine metabolism /// Propanoate metabolism
- id: APPNADOR
name: APPNADOR
genes: Cbei_0305
equation: aldpmnd[c] + (2) h_c[c] + nadh[c] => acphosphmd[c] + nad[c]
subsystem: Drug metabolism - cytochrome P450
- id: APRAUR
name: APRAUR
genes: Cbei_1224
equation: 5apru[c] + h_c[c] + nadph[c] => 5aprbu[c] + nadp[c]
subsystem: Riboflavin metabolism
- id: ARABabc
name: ARABabc
genes: Cbei_1380
equation: arab_L_e[e] + atp[c] + h2o_c[c] => adp[c] + arab_L_c[c] + h_c[c] + pi_c[c]
subsystem: Transport Reaction
- id: ARAI
name: ARAI
genes: Cbei_4457 or Cbei_4452
equation: arab_L_c[c] <=> rbl_L[c]
subsystem: Pentose and glucuronate interconversions
- id: ARGDC
name: ARGDC
genes: Cbei_4154 or Cbei_4411
equation: arg_L[c] + h_c[c] => agm[c] + co2_c[c]
subsystem: Arginine and proline metabolism
- id: ARGSL
name: ARGSL
genes: Cbei_4516
equation: argsuc[c] => arg_L[c] + fum[c]
subsystem: Alanine, aspartate and glutamate metabolism /// Arginine and proline
metabolism
- id: ARGSS
name: ARGSS
genes: Cbei_4515
equation: asp_L[c] + atp[c] + citr_L[c] => amp[c] + argsuc[c] + h_c[c] + ppi[c]
subsystem: Alanine, aspartate and glutamate metabolism /// Arginine and proline
metabolism
- id: ASAD
name: ASAD
genes: Cbei_0518 or Cbei_1797
equation: aspsa[c] + nadp[c] + pi_c[c] <=> 4pasp[c] + h_c[c] + nadph[c]
subsystem: Glycine, serine and threonine metabolism /// Lysine biosynthesis
- id: ASAL
name: ASAL
genes: Cbei_0630 or Cbei_4356
equation: acser[c] + tsul[c] => ac_c[c] + sulcys[c]
subsystem: Cysteine and methionine metabolism
- id: ASAL2
name: ASAL2
genes: Cbei_0577 or Cbei_4356
equation: acser[c] + seln[c] => ac_c[c] + selcys[c]
subsystem: Selenoamino acid metabolism
- id: ASCBex
name: ASCBex
genes: Cbei_4067 or Cbei_1974 or Cbei_2547
equation: ascb_L_e[e] + h_e[e] => ascb_L_c[c] + h_c[c]
subsystem: Transport Reaction
- id: ASNN
name: ASNN
genes: Cbei_2395
equation: asn_L[c] + h2o_c[c] => asp_L[c] + nh4_c[c]
subsystem: Alanine, aspartate and glutamate metabolism /// Cyanoamino acid metabolism
/// Nitrogen metabolism
- id: ASNS1
name: ASNS1
genes: Cbei_1034
equation: asp_L[c] + atp[c] + gln_L[c] + h2o_c[c] => amp[c] + asn_L[c] + glu_L[c]
+ h_c[c] + ppi[c]
subsystem: Alanine, aspartate and glutamate metabolism /// Nitrogen metabolism
- id: ASP1DC
name: ASP1DC
genes: Cbei_2608
equation: asp_L[c] + h_c[c] => ala_B[c] + co2_c[c]
subsystem: Pantothenate and CoA biosynthesis /// beta-Alanine metabolism
- id: ASP4CL
name: ASP4CL
genes: Cbei_1924
equation: asp_L[c] + h_c[c] => ala_L[c] + co2_c[c]
subsystem: Alanine, aspartate and glutamate metabolism
- id: ASPCT
name: ASPCT
genes: Cbei_1000 or Cbei_1001
equation: asp_L[c] + cbp[c] => cbasp[c] + h_c[c] + pi_c[c]
subsystem: Alanine, aspartate and glutamate metabolism /// Pyrimidine metabolism
- id: ASPK
name: ASPK
genes: Cbei_1211 or Cbei_4207
equation: asp_L[c] + atp[c] => 4pasp[c] + adp[c]
subsystem: Glycine, serine and threonine metabolism /// Lysine biosynthesis ///
Cysteine and methionine metabolism
- id: ASPO4
name: ASPO4
genes: Cbei_0793
equation: asp_L[c] + mqn8[c] => h_c[c] + iasp[c] + mql8[c]
subsystem: Nicotinate and nicotinamide metabolism
- id: ASPO5
name: ASPO5
genes: Cbei_0793
equation: asp_L[c] + fum[c] => h_c[c] + iasp[c] + succ_c[c]
subsystem: Nicotinate and nicotinamide metabolism
- id: ASPR
name: ASPR
genes: Cbei_0251 or Cbei_3176
equation: asp_L[c] => asp_D[c]
subsystem: Alanine, aspartate and glutamate metabolism
- id: ASPT
name: ASPT
genes: Cbei_3220 or Cbei_3244
equation: asp_L[c] => fum[c] + nh4_c[c]
subsystem: Alanine, aspartate and glutamate metabolism /// Nitrogen metabolism
- id: ASPTA
name: ASPTA
genes: Cbei_4316 or Cbei_4794
equation: akg[c] + asp_L[c] <=> glu_L[c] + oaa[c]
subsystem: Alanine, aspartate and glutamate metabolism
- id: ATBCR
name: ATBCR
genes: Cbei_0305
equation: nad[c] + xol7ah3[c] => h_c[c] + nadh[c] + xol7ah2al[c]
subsystem: Primary bile acid biosynthesis
- id: ATPM
name: ATPM
equation: atp[c] + h2o_c[c] => adp[c] + h_c[c] + pi_c[c]
subsystem: Biomass Synthesis
- id: ATPPRT
name: ATPPRT
genes: Cbei_1315 or Cbei_1316
equation: ppi[c] + prbatp[c] <=> atp[c] + prpp[c]
subsystem: Histidine metabolism
- id: BACCL
name: BACCL
genes: Cbei_1015
equation: atp[c] + btn_c[c] + h_c[c] => btamp[c] + ppi[c]
subsystem: Biotin metabolism
- id: BCOPBT
name: BCOPBT
genes: Cbei_0203
equation: btcoa[c] + pi_c[c] <=> butylphos[c] + coa[c]
subsystem: Butanoate metabolism
- id: BDG2HCGHD
name: BDG2HCGHD
genes: Cbei_4566 or Cbei_1477 or Cbei_3814
equation: bdg2hc[c] + h2o_c[c] => 2coum[c] + glc_D_c[c] + h_c[c]
subsystem: Phenylpropanoid biosynthesis
- id: BETALDHx
name: BETALDHx
genes: Cbei_4936
equation: betald[c] + h2o_c[c] + nad[c] => glyb_c[c] + (2) h_c[c] + nadh[c]
subsystem: Glycine, serine and threonine metabolism
- id: BETALDHy
name: BETALDHy
genes: Cbei_4936
equation: betald[c] + h2o_c[c] + nadp[c] => glyb_c[c] + (2) h_c[c] + nadph[c]
subsystem: Glycine, serine and threonine metabolism
- id: BPPH
name: BPPH
genes: Cbei_4233
equation: benzp[c] + h2o_c[c] => bz[c] + h_c[c] + pi_c[c]
subsystem: Benzoate degradation via CoA ligation
- id: BTNCC
name: BTNCC
genes: Cbei_1075 or Cbei_2754
equation: atp[c] + biocprot[c] + hco3_c[c] => adp[c] + carbbiocarbcprot[c] + h_c[c]
+ pi_c[c]
subsystem: Fatty acid biosynthesis
- id: BTNex
name: BTNex
equation: btn_e[e] + h_e[e] => btn_c[c] + h_c[c]
subsystem: Transport Reaction
- id: BTS4
name: BTS4
genes: Cbei_0301 or Cbei_1914
equation: amet[c] + dtbt[c] + s[c] => btn_c[c] + dad_5[c] + h_c[c] + met_L[c]
subsystem: Biotin metabolism
- id: BUTALD
name: BUTALD
genes: Cbei_0305
equation: btcoa[c] + h_c[c] + nadh[c] => btal[c] + coa[c] + nad[c]
subsystem: Butanoate metabolism
- id: BUTK
name: BUTK
genes: Cbei_4006 or Cbei_4609 or Cbei_0204
equation: adp[c] + butylphos[c] => atp[c] + but_c[c]
subsystem: Butanoate metabolism
- id: BUTOHDx
name: BUTOHDx
genes: Cbei_2421
equation: btal[c] + h_c[c] + nadh[c] => butoh_c[c] + nad[c]
subsystem: Butanoate metabolism
- id: BUTOHDy
name: BUTOHDy
genes: Cbei_2421
equation: btal[c] + h_c[c] + nadph[c] => butoh_c[c] + nadp[c]
subsystem: Butanoate metabolism
- id: BUTOHex
name: BUTOHex
equation: butoh_c[c] => butoh_e[e]
subsystem: Transport Reaction
- id: BUTex
name: BUTex
equation: but_c[c] + h_c[c] <=> but_e[e] + h_e[e]
subsystem: Transport Reaction
- id: C140
name: C140
equation: acACP[c] + (18) h_c[c] + (6) malACP[c] + (12) nadph[c] => (6) ACP[c]
+ (6) co2_c[c] + (6) h2o_c[c] + myrsACP[c] + (12) nadp[c]
subsystem: Fatty acid biosynthesis (lumped)
- id: C160
name: C160
equation: acACP[c] + (21) h_c[c] + (7) malACP[c] + (14) nadph[c] => (7) ACP[c]
+ (7) co2_c[c] + (7) h2o_c[c] + (14) nadp[c] + palmACP[c]
subsystem: Fatty acid biosynthesis (lumped)
- id: C161
name: C161
equation: acACP[c] + (20) h_c[c] + (7) malACP[c] + (13) nadph[c] => (7) ACP[c]
+ (7) co2_c[c] + (7) h2o_c[c] + hdACP[c] + (13) nadp[c]
subsystem: Fatty acid biosynthesis (lumped)
- id: C17CYC
name: C17CYC
equation: amet[c] + hdACP[c] => ahcys[c] + c17cycACP[c] + h_c[c]
subsystem: Fatty acid biosynthesis (lumped)
- id: C180
name: C180
equation: acACP[c] + (24) h_c[c] + (8) malACP[c] + (16) nadph[c] => (8) ACP[c]
+ (8) co2_c[c] + (8) h2o_c[c] + (16) nadp[c] + stracp[c]
subsystem: Fatty acid biosynthesis (lumped)
- id: C181
name: C181
equation: acACP[c] + (23) h_c[c] + (8) malACP[c] + (15) nadph[c] => (8) ACP[c]
+ (8) co2_c[c] + (8) h2o_c[c] + (15) nadp[c] + olACP[c]
subsystem: Fatty acid biosynthesis (lumped)
- id: C197CYC
name: C197CYC
equation: amet[c] + olACP[c] => ahcys[c] + c19cycACP[c] + h_c[c]
subsystem: Fatty acid biosynthesis (lumped)
- id: C2M26DCOAHL
name: C2M26DCOAHL
genes: Cbei_2230 or Cbei_2231
equation: c2m26dcoa[c] + h2o_c[c] => 3h26dm5coa[c]
subsystem: Limonene and pinene degradation
- id: CANV
name: CANV
genes: Cbei_4516
equation: cansuc[c] <=> canv_L[c] + fum[c]
subsystem: Canavanine biosynthesis
- id: CARBO
name: CARBO
equation: (2.057) udpg[c] + (4.114) udpgal[c] => carbo_met[c] + (6.171) udp[c]
subsystem: Biomass Synthesis
- id: CAT2
name: CAT2
genes: Cbei_4834
equation: etoh_c[c] + h2o2[c] => acald[c] + (2) h2o_c[c]
subsystem: Glycolysis / Gluconeogenesis
- id: CAVSUCC
name: CAVSUCC
genes: Cbei_4515
equation: asp_L[c] + atp[c] + urdhs[c] <=> amp[c] + cansuc[c] + h_c[c] + ppi[c]
subsystem: Canavanine biosynthesis
- id: CBIAT
name: CBIAT
genes: Cbei_1263
equation: atp[c] + cbi[c] + h_c[c] => adocbi[c] + pppi[c]
subsystem: Porphyrin and chlorophyll metabolism
- id: CBMK
name: CBMK
genes: Cbei_1969
equation: atp[c] + co2_c[c] + nh4_c[c] => adp[c] + cbp[c] + (2) h_c[c]
subsystem: Arginine and proline metabolism /// Nitrogen metabolism /// Purine metabolism
- id: CBMK2
name: CBMK2
genes: Cbei_1969
equation: atp[c] + carbm[c] => adp[c] + cbp[c]
subsystem: Nitrogen metabolism
- id: CBPCAN
name: CBPCAN
genes: Cbei_4938 or Cbei_2446 or Cbei_4521
equation: can_L[c] + cbp[c] <=> pi_c[c] + urdhs[c]
subsystem: Canavanine biosynthesis
- id: CBPS
name: CBPS
genes: Cbei_0028 or Cbei_0029
equation: (2) atp[c] + gln_L[c] + h2o_c[c] + hco3_c[c] => (2) adp[c] + cbp[c] +
glu_L[c] + (2) h_c[c] + pi_c[c]
subsystem: Alanine, aspartate and glutamate metabolism /// Pyrimidine metabolism
- id: CBXND
name: CBXND
genes: Cbei_4408
equation: cbxnspmdn[c] + (2) h_c[c] => co2_c[c] + nspmdn[c]
subsystem: Arginine and proline metabolism
- id: CDCTAH
name: CDCTAH
genes: Cbei_3673
equation: h_c[c] + h2o_c[c] + tdchola[c] => chola[c] + taur_c[c]
subsystem: Secondary bile acid biosynthesis
- id: CDFOR
name: CDFOR
genes: Cbei_4044
equation: (2) co2dam[c] + fmnh2[c] <=> (2) co1dam[c] + fmn[c] + (2) h_c[c]
subsystem: Porphyrin and chlorophyll metabolism
- id: CDPC6MT
name: CDPC6MT
genes: Cbei_2314 or Cbei_2313
equation: amet[c] + codhpre6[c] => ahcys[c] + copre7[c]
subsystem: Porphyrin and chlorophyll metabolism
- id: CDPDGP_CB
name: CDPDGP_CB
genes: Cbei_0572
equation: cdpdag_CB[c] + ser_L[c] => cmp[c] + h_c[c] + ps_CB[c]
subsystem: Glycerophospholipid metabolism /// Glycine, serine and threonine metabolism
- id: CDPMEK
name: CDPMEK
genes: Cbei_0394
equation: 4c2me[c] + atp[c] => 2p4c2me[c] + adp[c] + h_c[c]
subsystem: Terpenoid backbone biosynthesis
- id: CDS_CB
name: CDS_CB
genes: Cbei_1193
equation: ctp[c] + h_c[c] + pa_CB[c] => cdpdag_CB[c] + ppi[c]
subsystem: Glycerophospholipid metabolism
- id: CELBpts
name: CELBpts
genes: Cbei_0950 or Cbei_1478 or Cbei_2665 or Cbei_2707 or Cbei_2813 or Cbei_4634
or Cbei_4638 or Cbei_4683 or Cbei_1475 or Cbei_1476 or Cbei_4635 or Cbei_4636
or Cbei_4639 or Cbei_4640 or Cbei_4684 or Cbei_4685 or Cbei_2499 or Cbei_2663
or Cbei_2666 or Cbei_0221 or Cbei_2740 or Cbei_0380 or Cbei_0758 or (Cbei_3811
and Cbei_3812) or (Cbei_4537 and Cbei_4538) or (Cbei_2708 and Cbei_2709) or (Cbei_0951
and Cbei_0952)
equation: celb_e[e] + pep[c] => celb6p[c] + pyr[c]
subsystem: Transport Reaction
- id: CHOACT
name: CHOACT
genes: Cbei_3515 or Cbei_3217 or Cbei_2295
equation: accoa[c] + chlamph[c] <=> chlamph3ac[c] + coa[c]
subsystem: Unassigned
- id: CHORM
name: CHORM
genes: Cbei_1295 or Cbei_4573
equation: chor[c] => pphn[c]
subsystem: Phenylalanine, tyrosine and tryptophan biosynthesis
- id: CHORS
name: CHORS
genes: Cbei_4574
equation: 3psme[c] => chor[c] + pi_c[c]
subsystem: Phenylalanine, tyrosine and tryptophan biosynthesis
- id: CITex
name: CITex
genes: Cbei_2041 or Cbei_3350 or Cbei_3522
equation: cit_e[e] => cit_c[c]
subsystem: Transport Reaction
- id: CLPNS2_CB
name: CLPNS2_CB
genes: Cbei_4589
equation: cdpdag_CB[c] + pg_CB[c] => clpn_CB[c] + cmp[c] + h_c[c]
subsystem: Glycerophospholipid metabolism
- id: CLPNS_CB
name: CLPNS_CB
genes: Cbei_4589
equation: (2) pg_CB[c] <=> clpn_CB[c] + glyc[c]
subsystem: Glycerophospholipid metabolism
- id: CMHMSADH
name: CMHMSADH
genes: Cbei_0674
equation: h2o_c[c] + hydcarrbmetmucsa[c] + nad[c] <=> cmethydmuc[c] + nadh[c]
subsystem: Tyrosine metabolism
- id: CMLDC
name: CMLDC
genes: Cbei_2729 or Cbei_2372 or Cbei_1502 or Cbei_3752
equation: 2c25dho[c] => 5odhf2a[c] + co2_c[c] + h_c[c]
subsystem: Benzoate degradation via hydroxylation
- id: CMPSAS
name: CMPSAS
genes: Cbei_4277 or Cbei_4281
equation: acnam[c] + ctp[c] <=> cmpacna[c] + ppi[c]
subsystem: Amino sugar and nucleotide sugar metabolism
- id: CO2ex