test: [Automatic] Constraints upgrades: imageio, napari, numpy,…

… `partsegcore-compiled-backend`, `pydantic`, `pygments`, `scipy`, `sentry-sdk`, `simpleitk`, `tifffile`, `xlsxwriter` (#1236)

This PR is automatically created and updated by PartSeg GitHub
action cron to keep bundle dependencies modules up to date.

The updated packages are:

 * attrs
 * cloudpickle
 * dask
 * debugpy
 * executing
 * imageio
 * importlib-metadata
 * napari
 * napari-svg
 * numpy
 * partsegcore-compiled-backend
 * prompt-toolkit
 * pydantic
 * pygments
 * pyinstaller-hooks-contrib
 * pyopengl
 * referencing
 * scikit-image
 * scipy
 * sentry-sdk
 * setuptools
 * simpleitk
 * tifffile
 * tomli-w
 * tzdata
 * wrapt
 * xlsxwriter

<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->

## Summary by CodeRabbit

- **Dependencies**
- Updated multiple package versions across Python 3.9, 3.10, 3.11, and
3.12 constraint files
- Minor version upgrades for libraries like numpy, scipy, napari,
pydantic, and others
- Incremental updates to improve package compatibility and potential bug
fixes

<!-- end of auto-generated comment: release notes by coderabbit.ai -->

Co-authored-by: Czaki <[email protected]>

requirements/constraints_py3.10.txt

@@ -15,7 +15,7 @@ appdirs==1.4.4
     #   npe2
 asttokens==3.0.0
     # via stack-data
-attrs==24.3.0
+attrs==25.1.0
     # via
     #   jsonschema
     #   referencing
@@ -36,17 +36,17 @@ click==8.1.8
     # via
     #   dask
     #   typer
-cloudpickle==3.1.0
+cloudpickle==3.1.1
     # via dask
 comm==0.2.2
     # via ipykernel
 coverage==7.6.10
     # via partseg (pyproject.toml)
 czifile==2019.7.2
     # via partseg (pyproject.toml)
-dask==2024.12.1
+dask==2025.1.0
     # via napari
-debugpy==1.8.11
+debugpy==1.8.12
     # via ipykernel
 decorator==5.1.1
     # via ipython
@@ -62,7 +62,7 @@ exceptiongroup==1.2.2
     # via
     #   ipython
     #   pytest
-executing==2.1.0
+executing==2.2.0
     # via stack-data
 flexcache==0.3
     # via pint
@@ -84,7 +84,7 @@ idna==3.10
     # via requests
 imagecodecs==2024.12.30
     # via partseg (pyproject.toml)
-imageio==2.36.1
+imageio==2.37.0
     # via
     #   -r requirements/version_denylist.txt
     #   partseg (pyproject.toml)
@@ -93,7 +93,7 @@ imageio==2.36.1
     #   scikit-image
 imagesize==1.4.1
     # via sphinx
-importlib-metadata==8.5.0
+importlib-metadata==8.6.1
     # via
     #   build
     #   dask
@@ -164,13 +164,13 @@ mdurl==0.1.2
     # via markdown-it-py
 mpmath==1.3.0
     # via sympy
-napari==0.5.5
+napari==0.5.6
     # via partseg (pyproject.toml)
 napari-console==0.1.3
     # via napari
 napari-plugin-engine==0.2.0
     # via napari
-napari-svg==0.2.0
+napari-svg==0.2.1
     # via napari
 nest-asyncio==1.6.0
     # via ipykernel
@@ -182,7 +182,7 @@ npe2==0.7.7
     # via
     #   -r requirements/version_denylist.txt
     #   napari
-numpy==2.2.1
+numpy==2.2.2
     # via
     #   partseg (pyproject.toml)
     #   czifile
@@ -231,7 +231,7 @@ parso==0.8.4
     # via jedi
 partd==1.4.2
     # via dask
-partsegcore-compiled-backend==0.15.8
+partsegcore-compiled-backend==0.15.9
     # via partseg (pyproject.toml)
 partsegdata==0.10.0
     # via partseg (pyproject.toml)
@@ -255,7 +255,7 @@ pluggy==1.5.0
     #   pytest-qt
 pooch==1.8.2
     # via scikit-image
-prompt-toolkit==3.0.48
+prompt-toolkit==3.0.50
     # via ipython
 psutil==6.1.1
     # via
@@ -274,7 +274,7 @@ pure-eval==0.2.3
     # via stack-data
 pyconify==0.2
     # via superqt
-pydantic==2.10.4
+pydantic==2.10.6
     # via
     #   partseg (pyproject.toml)
     #   app-model
@@ -285,7 +285,7 @@ pydantic-compat==0.1.2
     # via app-model
 pydantic-core==2.27.2
     # via pydantic
-pygments==2.19.0
+pygments==2.19.1
     # via
     #   partseg (pyproject.toml)
     #   ipython
@@ -296,9 +296,9 @@ pygments==2.19.0
     #   superqt
 pyinstaller==6.11.1
     # via partseg (pyproject.toml)
-pyinstaller-hooks-contrib==2024.11
+pyinstaller-hooks-contrib==2025.0
     # via pyinstaller
-pyopengl==3.1.7
+pyopengl==3.1.9
     # via napari
 pyproject-hooks==1.2.0
     # via build
@@ -365,7 +365,7 @@ qtpy==2.4.2
     #   qtawesome
     #   qtconsole
     #   superqt
-referencing==0.35.1
+referencing==0.36.2
     # via
     #   jsonschema
     #   jsonschema-specifications
@@ -383,20 +383,20 @@ rpds-py==0.22.3
     # via
     #   jsonschema
     #   referencing
-scikit-image==0.25.0
+scikit-image==0.25.1
     # via
     #   partseg (pyproject.toml)
     #   napari
-scipy==1.15.0
+scipy==1.15.1
     # via
     #   partseg (pyproject.toml)
     #   napari
     #   scikit-image
-sentry-sdk==2.19.2
+sentry-sdk==2.20.0
     # via
     #   -r requirements/version_denylist.txt
     #   partseg (pyproject.toml)
-setuptools==75.7.0
+setuptools==75.8.0
     # via
     #   pyinstaller
     #   pyinstaller-hooks-contrib
@@ -409,7 +409,7 @@ shiboken6==6.4.2
     #   pyside6
     #   pyside6-addons
     #   pyside6-essentials
-simpleitk==2.4.0
+simpleitk==2.4.1
     # via partseg (pyproject.toml)
 six==1.17.0
     # via
@@ -442,7 +442,7 @@ sympy==1.13.3
     # via partseg (pyproject.toml)
 tabulate==0.9.0
     # via numpydoc
-tifffile==2024.12.12
+tifffile==2025.1.10
     # via
     #   partseg (pyproject.toml)
     #   czifile
@@ -456,7 +456,7 @@ tomli==2.2.1
     #   numpydoc
     #   pytest
     #   sphinx
-tomli-w==1.1.0
+tomli-w==1.2.0
     # via npe2
 toolz==1.0.0
     # via
@@ -493,10 +493,11 @@ typing-extensions==4.12.2
     #   pint
     #   pydantic
     #   pydantic-core
+    #   referencing
     #   rich
     #   superqt
     #   typer
-tzdata==2024.2
+tzdata==2025.1
     # via pandas
 urllib3==2.3.0
     # via
@@ -509,11 +510,11 @@ vispy==0.14.3
     #   napari-svg
 wcwidth==0.2.13
     # via prompt-toolkit
-wrapt==1.17.0
+wrapt==1.17.2
     # via napari
 xlrd==2.0.1
     # via partseg (pyproject.toml)
-xlsxwriter==3.2.0
+xlsxwriter==3.2.1
     # via partseg (pyproject.toml)
 zipp==3.21.0
     # via importlib-metadata