test: [Automatic] Constraints upgrades: numpy, tifffile (#1163)

This PR is automatically created and updated by PartSeg GitHub
action cron to keep bundle dependencies modules up to date.

The updated packages are:

 * app-model
 * dask
 * numpy
 * pure-eval
 * pytest
 * setuptools
 * sphinx
 * sphinxcontrib-htmlhelp
 * sphinxcontrib-qthelp
 * tifffile

<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->

## Summary by CodeRabbit

- **New Features**
- Updated various dependencies to their latest versions, enhancing
functionality and stability, including notable packages like
`app-model`, `numpy`, and `pytest`.

- **Bug Fixes**
- Incremental version updates for dependencies may include bug fixes
that improve overall application performance and reliability.

- **Chores**
- Regular maintenance performed on dependency versions to ensure
compatibility and leverage improvements from library maintainers.

<!-- end of auto-generated comment: release notes by coderabbit.ai -->

Co-authored-by: Czaki <[email protected]>

requirements/constraints_py3.10.txt

@@ -6,7 +6,7 @@ altgraph==0.17.4
     # via pyinstaller
 annotated-types==0.7.0
     # via pydantic
-app-model==0.2.7
+app-model==0.2.8
     # via napari
 appdirs==1.4.4
     # via
@@ -45,7 +45,7 @@ coverage==7.6.0
     # via partseg (pyproject.toml)
 czifile==2019.7.2
     # via partseg (pyproject.toml)
-dask==2024.7.0
+dask==2024.7.1
     # via napari
 debugpy==1.8.2
     # via ipykernel
@@ -183,7 +183,7 @@ npe2==0.7.6
     # via
     #   -r requirements/version_denylist.txt
     #   napari
-numpy==2.0.0
+numpy==2.0.1
     # via
     #   partseg (pyproject.toml)
     #   czifile
@@ -270,7 +270,7 @@ psygnal==0.11.1
     #   npe2
 ptyprocess==0.7.0
     # via pexpect
-pure-eval==0.2.2
+pure-eval==0.2.3
     # via stack-data
 pyconify==0.1.6
     # via superqt
@@ -326,7 +326,7 @@ pyside6-essentials==6.4.2
     # via
     #   pyside6
     #   pyside6-addons
-pytest==8.2.2
+pytest==8.3.1
     # via
     #   partseg (pyproject.toml)
     #   pytest-qt
@@ -397,7 +397,7 @@ sentry-sdk==2.10.0
     # via
     #   -r requirements/version_denylist.txt
     #   partseg (pyproject.toml)
-setuptools==71.0.3
+setuptools==71.1.0
     # via
     #   pyinstaller
     #   pyinstaller-hooks-contrib
@@ -419,17 +419,17 @@ six==1.16.0
     #   python-dateutil
 snowballstemmer==2.2.0
     # via sphinx
-sphinx==7.4.6
+sphinx==7.4.7
     # via numpydoc
 sphinxcontrib-applehelp==1.0.8
     # via sphinx
 sphinxcontrib-devhelp==1.0.6
     # via sphinx
-sphinxcontrib-htmlhelp==2.0.5
+sphinxcontrib-htmlhelp==2.0.6
     # via sphinx
 sphinxcontrib-jsmath==1.0.1
     # via sphinx
-sphinxcontrib-qthelp==1.0.7
+sphinxcontrib-qthelp==1.0.8
     # via sphinx
 sphinxcontrib-serializinghtml==1.1.10
     # via sphinx
@@ -444,7 +444,7 @@ sympy==1.13.1
     # via partseg (pyproject.toml)
 tabulate==0.9.0
     # via numpydoc
-tifffile==2024.7.2
+tifffile==2024.7.21
     # via
     #   partseg (pyproject.toml)
     #   czifile

requirements/constraints_py3.10_pydantic_1.txt

@@ -4,7 +4,7 @@ alabaster==0.7.16
     # via sphinx
 altgraph==0.17.4
     # via pyinstaller
-app-model==0.2.7
+app-model==0.2.8
     # via napari
 appdirs==1.4.4
     # via
@@ -43,7 +43,7 @@ coverage==7.6.0
     # via partseg (pyproject.toml)
 czifile==2019.7.2
     # via partseg (pyproject.toml)
-dask==2024.7.0
+dask==2024.7.1
     # via napari
 debugpy==1.8.2
     # via ipykernel
@@ -181,7 +181,7 @@ npe2==0.7.6
     # via
     #   -r requirements/version_denylist.txt
     #   napari
-numpy==2.0.0
+numpy==2.0.1
     # via
     #   partseg (pyproject.toml)
     #   czifile
@@ -268,7 +268,7 @@ psygnal==0.11.1
     #   npe2
 ptyprocess==0.7.0
     # via pexpect
-pure-eval==0.2.2
+pure-eval==0.2.3
     # via stack-data
 pyconify==0.1.6
     # via superqt
@@ -323,7 +323,7 @@ pyside6-essentials==6.4.2
     # via
     #   pyside6
     #   pyside6-addons
-pytest==8.2.2
+pytest==8.3.1
     # via
     #   partseg (pyproject.toml)
     #   pytest-qt
@@ -394,7 +394,7 @@ sentry-sdk==2.10.0
     # via
     #   -r requirements/version_denylist.txt
     #   partseg (pyproject.toml)
-setuptools==71.0.3
+setuptools==71.1.0
     # via
     #   pyinstaller
     #   pyinstaller-hooks-contrib
@@ -416,17 +416,17 @@ six==1.16.0
     #   python-dateutil
 snowballstemmer==2.2.0
     # via sphinx
-sphinx==7.4.6
+sphinx==7.4.7
     # via numpydoc
 sphinxcontrib-applehelp==1.0.8
     # via sphinx
 sphinxcontrib-devhelp==1.0.6
     # via sphinx
-sphinxcontrib-htmlhelp==2.0.5
+sphinxcontrib-htmlhelp==2.0.6
     # via sphinx
 sphinxcontrib-jsmath==1.0.1
     # via sphinx
-sphinxcontrib-qthelp==1.0.7
+sphinxcontrib-qthelp==1.0.8
     # via sphinx
 sphinxcontrib-serializinghtml==1.1.10
     # via sphinx
@@ -441,7 +441,7 @@ sympy==1.13.1
     # via partseg (pyproject.toml)
 tabulate==0.9.0
     # via numpydoc
-tifffile==2024.7.2
+tifffile==2024.7.21
     # via
     #   partseg (pyproject.toml)
     #   czifile

requirements/constraints_py3.11.txt

@@ -6,7 +6,7 @@ altgraph==0.17.4
     # via pyinstaller
 annotated-types==0.7.0
     # via pydantic
-app-model==0.2.7
+app-model==0.2.8
     # via napari
 appdirs==1.4.4
     # via
@@ -45,7 +45,7 @@ coverage==7.6.0
     # via partseg (pyproject.toml)
 czifile==2019.7.2
     # via partseg (pyproject.toml)
-dask==2024.7.0
+dask==2024.7.1
     # via napari
 debugpy==1.8.2
     # via ipykernel
@@ -177,7 +177,7 @@ npe2==0.7.6
     # via
     #   -r requirements/version_denylist.txt
     #   napari
-numpy==2.0.0
+numpy==2.0.1
     # via
     #   partseg (pyproject.toml)
     #   czifile
@@ -264,7 +264,7 @@ psygnal==0.11.1
     #   npe2
 ptyprocess==0.7.0
     # via pexpect
-pure-eval==0.2.2
+pure-eval==0.2.3
     # via stack-data
 pyconify==0.1.6
     # via superqt
@@ -319,7 +319,7 @@ pyside6-essentials==6.4.2
     # via
     #   pyside6
     #   pyside6-addons
-pytest==8.2.2
+pytest==8.3.1
     # via
     #   partseg (pyproject.toml)
     #   pytest-qt
@@ -390,7 +390,7 @@ sentry-sdk==2.10.0
     # via
     #   -r requirements/version_denylist.txt
     #   partseg (pyproject.toml)
-setuptools==71.0.3
+setuptools==71.1.0
     # via
     #   pyinstaller
     #   pyinstaller-hooks-contrib
@@ -412,17 +412,17 @@ six==1.16.0
     #   python-dateutil
 snowballstemmer==2.2.0
     # via sphinx
-sphinx==7.4.6
+sphinx==7.4.7
     # via numpydoc
 sphinxcontrib-applehelp==1.0.8
     # via sphinx
 sphinxcontrib-devhelp==1.0.6
     # via sphinx
-sphinxcontrib-htmlhelp==2.0.5
+sphinxcontrib-htmlhelp==2.0.6
     # via sphinx
 sphinxcontrib-jsmath==1.0.1
     # via sphinx
-sphinxcontrib-qthelp==1.0.7
+sphinxcontrib-qthelp==1.0.8
     # via sphinx
 sphinxcontrib-serializinghtml==1.1.10
     # via sphinx
@@ -437,7 +437,7 @@ sympy==1.13.1
     # via partseg (pyproject.toml)
 tabulate==0.9.0
     # via numpydoc
-tifffile==2024.7.2
+tifffile==2024.7.21
     # via
     #   partseg (pyproject.toml)
     #   czifile

requirements/constraints_py3.11_docs.txt

@@ -4,7 +4,7 @@ alabaster==0.7.16
     # via sphinx
 annotated-types==0.7.0
     # via pydantic
-app-model==0.2.7
+app-model==0.2.8
     # via napari
 appdirs==1.4.4
     # via
@@ -43,7 +43,7 @@ comm==0.2.2
     # via ipykernel
 czifile==2019.7.2
     # via partseg (pyproject.toml)
-dask==2024.7.0
+dask==2024.7.1
     # via napari
 debugpy==1.8.2
     # via ipykernel
@@ -169,7 +169,7 @@ npe2==0.7.6
     # via
     #   -r requirements/version_denylist.txt
     #   napari
-numpy==2.0.0
+numpy==2.0.1
     # via
     #   partseg (pyproject.toml)
     #   czifile
@@ -249,7 +249,7 @@ psygnal==0.11.1
     #   npe2
 ptyprocess==0.7.0
     # via pexpect
-pure-eval==0.2.2
+pure-eval==0.2.3
     # via stack-data
 pyconify==0.1.6
     # via superqt
@@ -379,7 +379,7 @@ six==1.16.0
     #   python-dateutil
 snowballstemmer==2.2.0
     # via sphinx
-sphinx==7.4.6
+sphinx==7.4.7
     # via
     #   partseg (pyproject.toml)
     #   autodoc-pydantic
@@ -394,11 +394,11 @@ sphinxcontrib-applehelp==1.0.8
     # via sphinx
 sphinxcontrib-devhelp==1.0.6
     # via sphinx
-sphinxcontrib-htmlhelp==2.0.5
+sphinxcontrib-htmlhelp==2.0.6
     # via sphinx
 sphinxcontrib-jsmath==1.0.1
     # via sphinx
-sphinxcontrib-qthelp==1.0.7
+sphinxcontrib-qthelp==1.0.8
     # via sphinx
 sphinxcontrib-serializinghtml==1.1.10
     # via sphinx
@@ -413,7 +413,7 @@ sympy==1.13.1
     # via partseg (pyproject.toml)
 tabulate==0.9.0
     # via numpydoc
-tifffile==2024.7.2
+tifffile==2024.7.21
     # via
     #   partseg (pyproject.toml)
     #   czifile