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Release 0.31.0#2649

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dweindl merged 18 commits intoAMICI-dev:masterAMICI-dev/AMICI:masterfrom dweindl:release_0.31.0dweindl/AMICI:release_0.31.0Copy head branch name to clipboardFeb 18, 2025

+1,685-607

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Commits on Dec 16, 2024

• Add RDataReporting::observables_likelihood (AMICI-dev#2627)

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Commits on Dec 17, 2024

• remove eqx.debug.nan, fixes 2629 (AMICI-dev#2630)

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Commits on Dec 18, 2024

• update diffrax & jaxlib (AMICI-dev#2632)

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• Avoid silent preequilibration failure in JAX (AMICI-dev#2631)

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Commits on Dec 19, 2024

• Fix RDataReporting::observables_likelihood (AMICI-dev#2633)

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Commits on Jan 7, 2025

• pre-commit autoupdate (AMICI-dev#2635)

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Commits on Jan 30, 2025

• Faster parameter mapping (AMICI-dev#2638)

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• jax vectorisation (AMICI-dev#2636)

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Commits on Feb 5, 2025

• fix AMICI-dev#2642 (AMICI-dev#2643)

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• No flattening of timepoint specific overrides in jax (AMICI-dev#2641)

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  dweindl

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• PEtab parameter mapping: minor speedup (AMICI-dev#2640)

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Commits on Feb 6, 2025

• Update references (AMICI-dev#2634)

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Commits on Feb 15, 2025

• Fix CVodeGetSensDky error message (AMICI-dev#2644)

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Commits on Feb 17, 2025

• Disable CvodeF checkpointing (AMICI-dev#2645)

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• Update valgrind suppressions (AMICI-dev#2646)

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Commits on Feb 18, 2025

• Fix crashes due to uncaught exceptions in ~FinalStateStorer (AMICI-dev#2647)

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• Merge branch 'master' into develop

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• Bump version; update changelog

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