upload-files

.gitattributes

@@ -0,0 +1,2 @@
+*.grd filter=lfs diff=lfs merge=lfs -text
+*.gri filter=lfs diff=lfs merge=lfs -text

.gitignore

@@ -5,35 +5,22 @@
 # Session Data files
 .RData
 
-# User-specific files
-.Ruserdata
-
-# Example code in package build process
-*-Ex.R
-
-# Output files from R CMD build
-/*.tar.gz
-
-# Output files from R CMD check
-/*.Rcheck/
-
 # RStudio files
 .Rproj.user/
 
-# produced vignettes
-vignettes/*.html
-vignettes/*.pdf
-
-# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
-.httr-oauth
-
 # knitr and R markdown default cache directories
-*_cache/
+/*_cache/
 /cache/
 
-# Temporary files created by R markdown
+# Temporary files
 *.utf8.md
 *.knit.md
-
-# R Environment Variables
-.Renviron
+*.bmp
+*.bpw
+
+# Other files
+manuscript/
+temporary/
+data/gadm/world/
+.Rproj.user
+processing/enm/

README.md

@@ -1 +1,3 @@
-# euro-cwr
+# euro-cwr
+
+Crop wild relatives as ecosystem service: a case study from Europe

data/bioclim/README.md

@@ -0,0 +1,22 @@
+# Bioclimatic data
+
+## WorldClim 1.4
+
+Rasters tagged with "bio_" are WorldClim data downloaded from http://worldclim.org/version1
+
+### Citation:
+
+Hijmans RJ, Cameron SE, Parra JL, et al (2005) Very high resolution interpolated climate surfaces for global land areas. 
+Int J Climatol 25:1965–1978. doi: 10.1002/joc.1276
+
+
+## Global Aridity Index and Potential Evapo-Transpiration
+
+Rasters tagged with "eto" and "ai" are data from the Global Aridity Index and Potential Evapo-Transpiration (ET0) Climate Database v2.
+
+### Citation
+
+Trabucco, A., and Zomer, R.J. 2018. Global Aridity Index and Potential
+Evapo-Transpiration (ET0) Climate Database v2. CGIAR Consortium for Spatial Information
+(CGIAR-CSI). Published online, available from the CGIAR-CSI GeoPortal at
+https://cgiarcsi.community

data/country_iso.csv

@@ -0,0 +1,250 @@
+name,alpha2,alpha3,region,subregion,intermediate-region
+Afghanistan,AF,AFG,Asia,Southern Asia,
+�land Islands,AX,ALA,Europe,Northern Europe,
+Albania,AL,ALB,Europe,Southern Europe,
+Algeria,DZ,DZA,Africa,Northern Africa,
+American Samoa,AS,ASM,Oceania,Polynesia,
+Andorra,AD,AND,Europe,Southern Europe,
+Angola,AO,AGO,Africa,Sub-Saharan Africa,Middle Africa
+Anguilla,AI,AIA,Americas,Latin America and the Caribbean,Caribbean
+Antarctica,AQ,ATA,,,
+Antigua and Barbuda,AG,ATG,Americas,Latin America and the Caribbean,Caribbean
+Argentina,AR,ARG,Americas,Latin America and the Caribbean,South America
+Armenia,AM,ARM,Asia,Western Asia,
+Aruba,AW,ABW,Americas,Latin America and the Caribbean,Caribbean
+Australia,AU,AUS,Oceania,Australia and New Zealand,
+Austria,AT,AUT,Europe,Western Europe,
+Azerbaijan,AZ,AZE,Asia,Western Asia,
+Bahamas,BS,BHS,Americas,Latin America and the Caribbean,Caribbean
+Bahrain,BH,BHR,Asia,Western Asia,
+Bangladesh,BD,BGD,Asia,Southern Asia,
+Barbados,BB,BRB,Americas,Latin America and the Caribbean,Caribbean
+Belarus,BY,BLR,Europe,Eastern Europe,
+Belgium,BE,BEL,Europe,Western Europe,
+Belize,BZ,BLZ,Americas,Latin America and the Caribbean,Central America
+Benin,BJ,BEN,Africa,Sub-Saharan Africa,Western Africa
+Bermuda,BM,BMU,Americas,Northern America,
+Bhutan,BT,BTN,Asia,Southern Asia,
+Bolivia (Plurinational State of),BO,BOL,Americas,Latin America and the Caribbean,South America
+"Bonaire, Sint Eustatius and Saba",BQ,BES,Americas,Latin America and the Caribbean,Caribbean
+Bosnia and Herzegovina,BA,BIH,Europe,Southern Europe,
+Botswana,BW,BWA,Africa,Sub-Saharan Africa,Southern Africa
+Bouvet Island,BV,BVT,Americas,Latin America and the Caribbean,South America
+Brazil,BR,BRA,Americas,Latin America and the Caribbean,South America
+British Indian Ocean Territory,IO,IOT,Africa,Sub-Saharan Africa,Eastern Africa
+Brunei Darussalam,BN,BRN,Asia,South-eastern Asia,
+Bulgaria,BG,BGR,Europe,Eastern Europe,
+Burkina Faso,BF,BFA,Africa,Sub-Saharan Africa,Western Africa
+Burundi,BI,BDI,Africa,Sub-Saharan Africa,Eastern Africa
+Cabo Verde,CV,CPV,Africa,Sub-Saharan Africa,Western Africa
+Cambodia,KH,KHM,Asia,South-eastern Asia,
+Cameroon,CM,CMR,Africa,Sub-Saharan Africa,Middle Africa
+Canada,CA,CAN,Americas,Northern America,
+Cayman Islands,KY,CYM,Americas,Latin America and the Caribbean,Caribbean
+Central African Republic,CF,CAF,Africa,Sub-Saharan Africa,Middle Africa
+Chad,TD,TCD,Africa,Sub-Saharan Africa,Middle Africa
+Chile,CL,CHL,Americas,Latin America and the Caribbean,South America
+China,CN,CHN,Asia,Eastern Asia,
+Christmas Island,CX,CXR,Oceania,Australia and New Zealand,
+Cocos (Keeling) Islands,CC,CCK,Oceania,Australia and New Zealand,
+Colombia,CO,COL,Americas,Latin America and the Caribbean,South America
+Comoros,KM,COM,Africa,Sub-Saharan Africa,Eastern Africa
+Congo,CG,COG,Africa,Sub-Saharan Africa,Middle Africa
+"Congo, Democratic Republic of the",CD,COD,Africa,Sub-Saharan Africa,Middle Africa
+Cook Islands,CK,COK,Oceania,Polynesia,
+Costa Rica,CR,CRI,Americas,Latin America and the Caribbean,Central America
+C�te d'Ivoire,CI,CIV,Africa,Sub-Saharan Africa,Western Africa
+Croatia,HR,HRV,Europe,Southern Europe,
+Cuba,CU,CUB,Americas,Latin America and the Caribbean,Caribbean
+Cura�ao,CW,CUW,Americas,Latin America and the Caribbean,Caribbean
+Cyprus,CY,CYP,Asia,Western Asia,
+Czechia,CZ,CZE,Europe,Eastern Europe,
+Denmark,DK,DNK,Europe,Northern Europe,
+Djibouti,DJ,DJI,Africa,Sub-Saharan Africa,Eastern Africa
+Dominica,DM,DMA,Americas,Latin America and the Caribbean,Caribbean
+Dominican Republic,DO,DOM,Americas,Latin America and the Caribbean,Caribbean
+Ecuador,EC,ECU,Americas,Latin America and the Caribbean,South America
+Egypt,EG,EGY,Africa,Northern Africa,
+El Salvador,SV,SLV,Americas,Latin America and the Caribbean,Central America
+Equatorial Guinea,GQ,GNQ,Africa,Sub-Saharan Africa,Middle Africa
+Eritrea,ER,ERI,Africa,Sub-Saharan Africa,Eastern Africa
+Estonia,EE,EST,Europe,Northern Europe,
+Eswatini,SZ,SWZ,Africa,Sub-Saharan Africa,Southern Africa
+Ethiopia,ET,ETH,Africa,Sub-Saharan Africa,Eastern Africa
+Falkland Islands (Malvinas),FK,FLK,Americas,Latin America and the Caribbean,South America
+Faroe Islands,FO,FRO,Europe,Northern Europe,
+Fiji,FJ,FJI,Oceania,Melanesia,
+Finland,FI,FIN,Europe,Northern Europe,
+France,FR,FRA,Europe,Western Europe,
+French Guiana,GF,GUF,Americas,Latin America and the Caribbean,South America
+French Polynesia,PF,PYF,Oceania,Polynesia,
+French Southern Territories,TF,ATF,Africa,Sub-Saharan Africa,Eastern Africa
+Gabon,GA,GAB,Africa,Sub-Saharan Africa,Middle Africa
+Gambia,GM,GMB,Africa,Sub-Saharan Africa,Western Africa
+Georgia,GE,GEO,Asia,Western Asia,
+Germany,DE,DEU,Europe,Western Europe,
+Ghana,GH,GHA,Africa,Sub-Saharan Africa,Western Africa
+Gibraltar,GI,GIB,Europe,Southern Europe,
+Greece,GR,GRC,Europe,Southern Europe,
+Greenland,GL,GRL,Americas,Northern America,
+Grenada,GD,GRD,Americas,Latin America and the Caribbean,Caribbean
+Guadeloupe,GP,GLP,Americas,Latin America and the Caribbean,Caribbean
+Guam,GU,GUM,Oceania,Micronesia,
+Guatemala,GT,GTM,Americas,Latin America and the Caribbean,Central America
+Guernsey,GG,GGY,Europe,Northern Europe,Channel Islands
+Guinea,GN,GIN,Africa,Sub-Saharan Africa,Western Africa
+Guinea-Bissau,GW,GNB,Africa,Sub-Saharan Africa,Western Africa
+Guyana,GY,GUY,Americas,Latin America and the Caribbean,South America
+Haiti,HT,HTI,Americas,Latin America and the Caribbean,Caribbean
+Heard Island and McDonald Islands,HM,HMD,Oceania,Australia and New Zealand,
+Holy See,VA,VAT,Europe,Southern Europe,
+Honduras,HN,HND,Americas,Latin America and the Caribbean,Central America
+Hong Kong,HK,HKG,Asia,Eastern Asia,
+Hungary,HU,HUN,Europe,Eastern Europe,
+Iceland,IS,ISL,Europe,Northern Europe,
+India,IN,IND,Asia,Southern Asia,
+Indonesia,ID,IDN,Asia,South-eastern Asia,
+Iran (Islamic Republic of),IR,IRN,Asia,Southern Asia,
+Iraq,IQ,IRQ,Asia,Western Asia,
+Ireland,IE,IRL,Europe,Northern Europe,
+Isle of Man,IM,IMN,Europe,Northern Europe,
+Israel,IL,ISR,Asia,Western Asia,
+Italy,IT,ITA,Europe,Southern Europe,
+Jamaica,JM,JAM,Americas,Latin America and the Caribbean,Caribbean
+Japan,JP,JPN,Asia,Eastern Asia,
+Jersey,JE,JEY,Europe,Northern Europe,Channel Islands
+Jordan,JO,JOR,Asia,Western Asia,
+Kazakhstan,KZ,KAZ,Asia,Central Asia,
+Kenya,KE,KEN,Africa,Sub-Saharan Africa,Eastern Africa
+Kiribati,KI,KIR,Oceania,Micronesia,
+Korea (Democratic People's Republic of),KP,PRK,Asia,Eastern Asia,
+"Korea, Republic of",KR,KOR,Asia,Eastern Asia,
+Kuwait,KW,KWT,Asia,Western Asia,
+Kyrgyzstan,KG,KGZ,Asia,Central Asia,
+Lao People's Democratic Republic,LA,LAO,Asia,South-eastern Asia,
+Latvia,LV,LVA,Europe,Northern Europe,
+Lebanon,LB,LBN,Asia,Western Asia,
+Lesotho,LS,LSO,Africa,Sub-Saharan Africa,Southern Africa
+Liberia,LR,LBR,Africa,Sub-Saharan Africa,Western Africa
+Libya,LY,LBY,Africa,Northern Africa,
+Liechtenstein,LI,LIE,Europe,Western Europe,
+Lithuania,LT,LTU,Europe,Northern Europe,
+Luxembourg,LU,LUX,Europe,Western Europe,
+Macao,MO,MAC,Asia,Eastern Asia,
+Madagascar,MG,MDG,Africa,Sub-Saharan Africa,Eastern Africa
+Malawi,MW,MWI,Africa,Sub-Saharan Africa,Eastern Africa
+Malaysia,MY,MYS,Asia,South-eastern Asia,
+Maldives,MV,MDV,Asia,Southern Asia,
+Mali,ML,MLI,Africa,Sub-Saharan Africa,Western Africa
+Malta,MT,MLT,Europe,Southern Europe,
+Marshall Islands,MH,MHL,Oceania,Micronesia,
+Martinique,MQ,MTQ,Americas,Latin America and the Caribbean,Caribbean
+Mauritania,MR,MRT,Africa,Sub-Saharan Africa,Western Africa
+Mauritius,MU,MUS,Africa,Sub-Saharan Africa,Eastern Africa
+Mayotte,YT,MYT,Africa,Sub-Saharan Africa,Eastern Africa
+Mexico,MX,MEX,Americas,Latin America and the Caribbean,Central America
+Micronesia (Federated States of),FM,FSM,Oceania,Micronesia,
+"Moldova, Republic of",MD,MDA,Europe,Eastern Europe,
+Monaco,MC,MCO,Europe,Western Europe,
+Mongolia,MN,MNG,Asia,Eastern Asia,
+Montenegro,ME,MNE,Europe,Southern Europe,
+Montserrat,MS,MSR,Americas,Latin America and the Caribbean,Caribbean
+Morocco,MA,MAR,Africa,Northern Africa,
+Mozambique,MZ,MOZ,Africa,Sub-Saharan Africa,Eastern Africa
+Myanmar,MM,MMR,Asia,South-eastern Asia,
+Namibia,NA,NAM,Africa,Sub-Saharan Africa,Southern Africa
+Nauru,NR,NRU,Oceania,Micronesia,
+Nepal,NP,NPL,Asia,Southern Asia,
+Netherlands,NL,NLD,Europe,Western Europe,
+New Caledonia,NC,NCL,Oceania,Melanesia,
+New Zealand,NZ,NZL,Oceania,Australia and New Zealand,
+Nicaragua,NI,NIC,Americas,Latin America and the Caribbean,Central America
+Niger,NE,NER,Africa,Sub-Saharan Africa,Western Africa
+Nigeria,NG,NGA,Africa,Sub-Saharan Africa,Western Africa
+Niue,NU,NIU,Oceania,Polynesia,
+Norfolk Island,NF,NFK,Oceania,Australia and New Zealand,
+North Macedonia,MK,MKD,Europe,Southern Europe,
+Northern Mariana Islands,MP,MNP,Oceania,Micronesia,
+Norway,NO,NOR,Europe,Northern Europe,
+Oman,OM,OMN,Asia,Western Asia,
+Pakistan,PK,PAK,Asia,Southern Asia,
+Palau,PW,PLW,Oceania,Micronesia,
+"Palestine, State of",PS,PSE,Asia,Western Asia,
+Panama,PA,PAN,Americas,Latin America and the Caribbean,Central America
+Papua New Guinea,PG,PNG,Oceania,Melanesia,
+Paraguay,PY,PRY,Americas,Latin America and the Caribbean,South America
+Peru,PE,PER,Americas,Latin America and the Caribbean,South America
+Philippines,PH,PHL,Asia,South-eastern Asia,
+Pitcairn,PN,PCN,Oceania,Polynesia,
+Poland,PL,POL,Europe,Eastern Europe,
+Portugal,PT,PRT,Europe,Southern Europe,
+Puerto Rico,PR,PRI,Americas,Latin America and the Caribbean,Caribbean
+Qatar,QA,QAT,Asia,Western Asia,
+R�union,RE,REU,Africa,Sub-Saharan Africa,Eastern Africa
+Romania,RO,ROU,Europe,Eastern Europe,
+Russian Federation,RU,RUS,Europe,Eastern Europe,
+Rwanda,RW,RWA,Africa,Sub-Saharan Africa,Eastern Africa
+Saint Barth�lemy,BL,BLM,Americas,Latin America and the Caribbean,Caribbean
+"Saint Helena, Ascension and Tristan da Cunha",SH,SHN,Africa,Sub-Saharan Africa,Western Africa
+Saint Kitts and Nevis,KN,KNA,Americas,Latin America and the Caribbean,Caribbean
+Saint Lucia,LC,LCA,Americas,Latin America and the Caribbean,Caribbean
+Saint Martin (French part),MF,MAF,Americas,Latin America and the Caribbean,Caribbean
+Saint Pierre and Miquelon,PM,SPM,Americas,Northern America,
+Saint Vincent and the Grenadines,VC,VCT,Americas,Latin America and the Caribbean,Caribbean
+Samoa,WS,WSM,Oceania,Polynesia,
+San Marino,SM,SMR,Europe,Southern Europe,
+Sao Tome and Principe,ST,STP,Africa,Sub-Saharan Africa,Middle Africa
+Saudi Arabia,SA,SAU,Asia,Western Asia,
+Senegal,SN,SEN,Africa,Sub-Saharan Africa,Western Africa
+Serbia,RS,SRB,Europe,Southern Europe,
+Seychelles,SC,SYC,Africa,Sub-Saharan Africa,Eastern Africa
+Sierra Leone,SL,SLE,Africa,Sub-Saharan Africa,Western Africa
+Singapore,SG,SGP,Asia,South-eastern Asia,
+Sint Maarten (Dutch part),SX,SXM,Americas,Latin America and the Caribbean,Caribbean
+Slovakia,SK,SVK,Europe,Eastern Europe,
+Slovenia,SI,SVN,Europe,Southern Europe,
+Solomon Islands,SB,SLB,Oceania,Melanesia,
+Somalia,SO,SOM,Africa,Sub-Saharan Africa,Eastern Africa
+South Africa,ZA,ZAF,Africa,Sub-Saharan Africa,Southern Africa
+South Georgia and the South Sandwich Islands,GS,SGS,Americas,Latin America and the Caribbean,South America
+South Sudan,SS,SSD,Africa,Sub-Saharan Africa,Eastern Africa
+Spain,ES,ESP,Europe,Southern Europe,
+Sri Lanka,LK,LKA,Asia,Southern Asia,
+Sudan,SD,SDN,Africa,Northern Africa,
+Suriname,SR,SUR,Americas,Latin America and the Caribbean,South America
+Svalbard and Jan Mayen,SJ,SJM,Europe,Northern Europe,
+Sweden,SE,SWE,Europe,Northern Europe,
+Switzerland,CH,CHE,Europe,Western Europe,
+Syrian Arab Republic,SY,SYR,Asia,Western Asia,
+"Taiwan, Province of China",TW,TWN,Asia,Eastern Asia,
+Tajikistan,TJ,TJK,Asia,Central Asia,
+"Tanzania, United Republic of",TZ,TZA,Africa,Sub-Saharan Africa,Eastern Africa
+Thailand,TH,THA,Asia,South-eastern Asia,
+Timor-Leste,TL,TLS,Asia,South-eastern Asia,
+Togo,TG,TGO,Africa,Sub-Saharan Africa,Western Africa
+Tokelau,TK,TKL,Oceania,Polynesia,
+Tonga,TO,TON,Oceania,Polynesia,
+Trinidad and Tobago,TT,TTO,Americas,Latin America and the Caribbean,Caribbean
+Tunisia,TN,TUN,Africa,Northern Africa,
+Turkey,TR,TUR,Asia,Western Asia,
+Turkmenistan,TM,TKM,Asia,Central Asia,
+Turks and Caicos Islands,TC,TCA,Americas,Latin America and the Caribbean,Caribbean
+Tuvalu,TV,TUV,Oceania,Polynesia,
+Uganda,UG,UGA,Africa,Sub-Saharan Africa,Eastern Africa
+Ukraine,UA,UKR,Europe,Eastern Europe,
+United Arab Emirates,AE,ARE,Asia,Western Asia,
+United Kingdom of Great Britain and Northern Ireland,GB,GBR,Europe,Northern Europe,
+United States of America,US,USA,Americas,Northern America,
+United States Minor Outlying Islands,UM,UMI,Oceania,Micronesia,
+Uruguay,UY,URY,Americas,Latin America and the Caribbean,South America
+Uzbekistan,UZ,UZB,Asia,Central Asia,
+Vanuatu,VU,VUT,Oceania,Melanesia,
+Venezuela (Bolivarian Republic of),VE,VEN,Americas,Latin America and the Caribbean,South America
+Viet Nam,VN,VNM,Asia,South-eastern Asia,
+Virgin Islands (British),VG,VGB,Americas,Latin America and the Caribbean,Caribbean
+Virgin Islands (U.S.),VI,VIR,Americas,Latin America and the Caribbean,Caribbean
+Wallis and Futuna,WF,WLF,Oceania,Polynesia,
+Western Sahara,EH,ESH,Africa,Northern Africa,
+Yemen,YE,YEM,Asia,Western Asia,
+Zambia,ZM,ZMB,Africa,Sub-Saharan Africa,Eastern Africa
+Zimbabwe,ZW,ZWE,Africa,Sub-Saharan Africa,Eastern Africa

data/gadm/README.md

@@ -0,0 +1,7 @@
+# GADM
+
+This is Global Administrative Areas data downloaded from https://gadm.org/index.html
+
+## Citation:
+
+Global Administrative Areas (2012). GADM database of Global Administrative Areas, version 2.0. [online] URL: www.gadm.org.

data/gadm/europe/europe.prj

@@ -0,0 +1 @@
+GEOGCS["GCS_WGS_1984",DATUM["D_WGS_1984",SPHEROID["WGS_1984",6378137,298.257223563]],PRIMEM["Greenwich",0],UNIT["Degree",0.017453292519943295]]

data/gadm/europe/europe_adm0.prj

@@ -0,0 +1 @@
+GEOGCS["GCS_WGS_1984",DATUM["D_WGS_1984",SPHEROID["WGS_1984",6378137,298.257223563]],PRIMEM["Greenwich",0],UNIT["Degree",0.017453292519943295]]

data/gadm/europe/europe_buffer_010arcmin.prj

@@ -0,0 +1 @@
+GEOGCS["GCS_WGS_1984",DATUM["D_WGS_1984",SPHEROID["WGS_1984",6378137,298.257223563]],PRIMEM["Greenwich",0],UNIT["Degree",0.017453292519943295]]

data/gadm/europe/europe_coast_points.prj

@@ -0,0 +1 @@
+GEOGCS["GCS_WGS_1984",DATUM["D_WGS_1984",SPHEROID["WGS_1984",6378137,298.257223563]],PRIMEM["Greenwich",0],UNIT["Degree",0.017453292519943295]]

data/gadm/fennoscandia/coast_points.prj

@@ -0,0 +1 @@
+GEOGCS["GCS_WGS_1984",DATUM["D_WGS_1984",SPHEROID["WGS_1984",6378137,298.257223563]],PRIMEM["Greenwich",0],UNIT["Degree",0.017453292519943295]]

data/gadm/fennoscandia/fennoscandia.prj

@@ -0,0 +1 @@
+GEOGCS["GCS_WGS_1984",DATUM["D_WGS_1984",SPHEROID["WGS_1984",6378137,298.257223563]],PRIMEM["Greenwich",0],UNIT["Degree",0.017453292519943295]]

data/gadm/fennoscandia/fennoscandia_buffer.cpg

@@ -0,0 +1 @@
+UTF-8

data/gadm/fennoscandia/fennoscandia_buffer.prj

@@ -0,0 +1 @@
+GEOGCS["GCS_WGS_1984",DATUM["D_WGS_1984",SPHEROID["WGS_1984",6378137.0,298.257223563]],PRIMEM["Greenwich",0.0],UNIT["Degree",0.0174532925199433]]