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2 changes: 2 additions & 0 deletions _modules/cyto_dl/api/cyto_dl_model/cyto_dl_base_model.html
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<li class="toctree-l5"><a class="reference internal" href="../../../../cyto_dl.datamodules.dataframe.utils.html">cyto_dl.datamodules.dataframe.utils module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="../../../../cyto_dl.datamodules.array.html">cyto_dl.datamodules.array module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../../cyto_dl.datamodules.data_dict.html">cyto_dl.datamodules.data_dict module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../../cyto_dl.datamodules.folder.html">cyto_dl.datamodules.folder module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../../cyto_dl.datamodules.multidim_image.html">cyto_dl.datamodules.multidim_image module</a></li>
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<li class="toctree-l5"><a class="reference internal" href="../../../../cyto_dl.utils.spharm.rotation.html">cyto_dl.utils.spharm.rotation module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="../../../../cyto_dl.utils.array.html">cyto_dl.utils.array module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../../cyto_dl.utils.config.html">cyto_dl.utils.config module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../../cyto_dl.utils.download_test_data.html">cyto_dl.utils.download_test_data module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../../cyto_dl.utils.dummy_dataset.html">cyto_dl.utils.dummy_dataset module</a></li>
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<li class="toctree-l5"><a class="reference internal" href="../../../../cyto_dl.datamodules.dataframe.utils.html">cyto_dl.datamodules.dataframe.utils module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="../../../../cyto_dl.datamodules.array.html">cyto_dl.datamodules.array module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../../cyto_dl.datamodules.data_dict.html">cyto_dl.datamodules.data_dict module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../../cyto_dl.datamodules.folder.html">cyto_dl.datamodules.folder module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../../cyto_dl.datamodules.multidim_image.html">cyto_dl.datamodules.multidim_image module</a></li>
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<li class="toctree-l5"><a class="reference internal" href="../../../../cyto_dl.utils.spharm.rotation.html">cyto_dl.utils.spharm.rotation module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="../../../../cyto_dl.utils.array.html">cyto_dl.utils.array module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../../cyto_dl.utils.config.html">cyto_dl.utils.config module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../../cyto_dl.utils.download_test_data.html">cyto_dl.utils.download_test_data module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../../cyto_dl.utils.dummy_dataset.html">cyto_dl.utils.dummy_dataset module</a></li>
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5 changes: 4 additions & 1 deletion _modules/cyto_dl/api/data.html
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<li class="toctree-l5"><a class="reference internal" href="../../../cyto_dl.datamodules.dataframe.utils.html">cyto_dl.datamodules.dataframe.utils module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.array.html">cyto_dl.datamodules.array module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.data_dict.html">cyto_dl.datamodules.data_dict module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.folder.html">cyto_dl.datamodules.folder module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.multidim_image.html">cyto_dl.datamodules.multidim_image module</a></li>
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<li class="toctree-l5"><a class="reference internal" href="../../../cyto_dl.utils.spharm.rotation.html">cyto_dl.utils.spharm.rotation module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.array.html">cyto_dl.utils.array module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.config.html">cyto_dl.utils.config module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.download_test_data.html">cyto_dl.utils.download_test_data module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.dummy_dataset.html">cyto_dl.utils.dummy_dataset module</a></li>
Expand Down Expand Up @@ -434,7 +436,8 @@ <h1>Source code for cyto_dl.api.data</h1><div class="highlight"><pre>
<span class="n">INSTANCE_SEG</span> <span class="o">=</span> <span class="s2">&quot;instance_seg&quot;</span>
<span class="n">LABEL_FREE</span> <span class="o">=</span> <span class="s2">&quot;labelfree&quot;</span>
<span class="n">SEGMENTATION_PLUGIN</span> <span class="o">=</span> <span class="s2">&quot;segmentation_plugin&quot;</span>
<span class="n">SEGMENTATION</span> <span class="o">=</span> <span class="s2">&quot;segmentation&quot;</span></div>
<span class="n">SEGMENTATION</span> <span class="o">=</span> <span class="s2">&quot;segmentation&quot;</span>
<span class="n">SEGMENTATION_ARRAY</span> <span class="o">=</span> <span class="s2">&quot;segmentation_array&quot;</span></div>


<div class="viewcode-block" id="HardwareType"><a class="viewcode-back" href="../../../cyto_dl.api.data.html#cyto_dl.api.data.HardwareType">[docs]</a><span class="k">class</span> <span class="nc">HardwareType</span><span class="p">(</span><span class="n">Enum</span><span class="p">):</span>
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10 changes: 6 additions & 4 deletions _modules/cyto_dl/api/model.html
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<li class="toctree-l5"><a class="reference internal" href="../../../cyto_dl.datamodules.dataframe.utils.html">cyto_dl.datamodules.dataframe.utils module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.array.html">cyto_dl.datamodules.array module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.data_dict.html">cyto_dl.datamodules.data_dict module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.folder.html">cyto_dl.datamodules.folder module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.multidim_image.html">cyto_dl.datamodules.multidim_image module</a></li>
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<li class="toctree-l5"><a class="reference internal" href="../../../cyto_dl.utils.spharm.rotation.html">cyto_dl.utils.spharm.rotation module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.array.html">cyto_dl.utils.array module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.config.html">cyto_dl.utils.config module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.download_test_data.html">cyto_dl.utils.download_test_data module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.dummy_dataset.html">cyto_dl.utils.dummy_dataset module</a></li>
Expand Down Expand Up @@ -524,19 +526,19 @@ <h1>Source code for cyto_dl.api.model</h1><div class="highlight"><pre>
<span class="k">async</span> <span class="k">def</span> <span class="nf">_predict_async</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
<span class="k">return</span> <span class="n">evaluate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cfg</span><span class="p">)</span>

<div class="viewcode-block" id="CytoDLModel.train"><a class="viewcode-back" href="../../../cyto_dl.api.model.html#cyto_dl.api.model.CytoDLModel.train">[docs]</a> <span class="k">def</span> <span class="nf">train</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">run_async</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
<div class="viewcode-block" id="CytoDLModel.train"><a class="viewcode-back" href="../../../cyto_dl.api.model.html#cyto_dl.api.model.CytoDLModel.train">[docs]</a> <span class="k">def</span> <span class="nf">train</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">run_async</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">data</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">cfg</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Configuration must be loaded before training!&quot;</span><span class="p">)</span>
<span class="k">if</span> <span class="n">run_async</span><span class="p">:</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_train_async</span><span class="p">()</span>
<span class="k">return</span> <span class="n">train_model</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cfg</span><span class="p">)</span></div>
<span class="k">return</span> <span class="n">train_model</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cfg</span><span class="p">,</span> <span class="n">data</span><span class="p">)</span></div>

<div class="viewcode-block" id="CytoDLModel.predict"><a class="viewcode-back" href="../../../cyto_dl.api.model.html#cyto_dl.api.model.CytoDLModel.predict">[docs]</a> <span class="k">def</span> <span class="nf">predict</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">run_async</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
<div class="viewcode-block" id="CytoDLModel.predict"><a class="viewcode-back" href="../../../cyto_dl.api.model.html#cyto_dl.api.model.CytoDLModel.predict">[docs]</a> <span class="k">def</span> <span class="nf">predict</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">run_async</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">data</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">cfg</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Configuration must be loaded before predicting!&quot;</span><span class="p">)</span>
<span class="k">if</span> <span class="n">run_async</span><span class="p">:</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_predict_async</span><span class="p">()</span>
<span class="k">return</span> <span class="n">evaluate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cfg</span><span class="p">)</span></div></div>
<span class="k">return</span> <span class="n">evaluate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cfg</span><span class="p">,</span> <span class="n">data</span><span class="p">)</span></div></div>
</pre></div>
</article>
</div>
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<li class="toctree-l5"><a class="reference internal" href="../../../cyto_dl.datamodules.dataframe.utils.html">cyto_dl.datamodules.dataframe.utils module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.array.html">cyto_dl.datamodules.array module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.data_dict.html">cyto_dl.datamodules.data_dict module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.folder.html">cyto_dl.datamodules.folder module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.multidim_image.html">cyto_dl.datamodules.multidim_image module</a></li>
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<li class="toctree-l5"><a class="reference internal" href="../../../cyto_dl.utils.spharm.rotation.html">cyto_dl.utils.spharm.rotation module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.array.html">cyto_dl.utils.array module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.config.html">cyto_dl.utils.config module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.download_test_data.html">cyto_dl.utils.download_test_data module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.dummy_dataset.html">cyto_dl.utils.dummy_dataset module</a></li>
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2 changes: 2 additions & 0 deletions _modules/cyto_dl/callbacks/image_saver.html
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<li class="toctree-l5"><a class="reference internal" href="../../../cyto_dl.datamodules.dataframe.utils.html">cyto_dl.datamodules.dataframe.utils module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.array.html">cyto_dl.datamodules.array module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.data_dict.html">cyto_dl.datamodules.data_dict module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.folder.html">cyto_dl.datamodules.folder module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.multidim_image.html">cyto_dl.datamodules.multidim_image module</a></li>
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<li class="toctree-l5"><a class="reference internal" href="../../../cyto_dl.utils.spharm.rotation.html">cyto_dl.utils.spharm.rotation module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.array.html">cyto_dl.utils.array module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.config.html">cyto_dl.utils.config module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.download_test_data.html">cyto_dl.utils.download_test_data module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.dummy_dataset.html">cyto_dl.utils.dummy_dataset module</a></li>
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2 changes: 2 additions & 0 deletions _modules/cyto_dl/callbacks/layer_freeze.html
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<li class="toctree-l5"><a class="reference internal" href="../../../cyto_dl.datamodules.dataframe.utils.html">cyto_dl.datamodules.dataframe.utils module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.array.html">cyto_dl.datamodules.array module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.data_dict.html">cyto_dl.datamodules.data_dict module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.folder.html">cyto_dl.datamodules.folder module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.multidim_image.html">cyto_dl.datamodules.multidim_image module</a></li>
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<li class="toctree-l5"><a class="reference internal" href="../../../cyto_dl.utils.spharm.rotation.html">cyto_dl.utils.spharm.rotation module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.array.html">cyto_dl.utils.array module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.config.html">cyto_dl.utils.config module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.download_test_data.html">cyto_dl.utils.download_test_data module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.dummy_dataset.html">cyto_dl.utils.dummy_dataset module</a></li>
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2 changes: 2 additions & 0 deletions _modules/cyto_dl/callbacks/model_utils.html
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<li class="toctree-l5"><a class="reference internal" href="../../../cyto_dl.datamodules.dataframe.utils.html">cyto_dl.datamodules.dataframe.utils module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.array.html">cyto_dl.datamodules.array module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.data_dict.html">cyto_dl.datamodules.data_dict module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.folder.html">cyto_dl.datamodules.folder module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.multidim_image.html">cyto_dl.datamodules.multidim_image module</a></li>
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<li class="toctree-l5"><a class="reference internal" href="../../../cyto_dl.utils.spharm.rotation.html">cyto_dl.utils.spharm.rotation module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.array.html">cyto_dl.utils.array module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.config.html">cyto_dl.utils.config module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.download_test_data.html">cyto_dl.utils.download_test_data module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.dummy_dataset.html">cyto_dl.utils.dummy_dataset module</a></li>
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2 changes: 2 additions & 0 deletions _modules/cyto_dl/callbacks/outlier_detection.html
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<li class="toctree-l5"><a class="reference internal" href="../../../cyto_dl.datamodules.dataframe.utils.html">cyto_dl.datamodules.dataframe.utils module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.array.html">cyto_dl.datamodules.array module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.data_dict.html">cyto_dl.datamodules.data_dict module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.folder.html">cyto_dl.datamodules.folder module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.datamodules.multidim_image.html">cyto_dl.datamodules.multidim_image module</a></li>
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<li class="toctree-l5"><a class="reference internal" href="../../../cyto_dl.utils.spharm.rotation.html">cyto_dl.utils.spharm.rotation module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.array.html">cyto_dl.utils.array module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.config.html">cyto_dl.utils.config module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.download_test_data.html">cyto_dl.utils.download_test_data module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../../../cyto_dl.utils.dummy_dataset.html">cyto_dl.utils.dummy_dataset module</a></li>
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