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Merge pull request #434 from AllenCellModeling/admin/requirements-upd…
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…ate_2024-10-03_18-46

admin/requirements-update_2024-10-03_18-46
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@pgarrison
pgarrison authored Oct 3, 2024
2 parents 7e0334b + 7f53725 commit a96358d
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Showing 24 changed files with 1,113 additions and 96 deletions.
4 changes: 2 additions & 2 deletions requirements/linux/all-requirements.txt
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Expand Up @@ -15,7 +15,7 @@ aniso8601==9.0.1
anndata==0.10.9
annotated-types==0.7.0
antlr4-python3-runtime==4.9.3
array-api-compat==1.8
array-api-compat==1.9
asciitree==0.3.3
astropy==6.0.1
astropy-iers-data==0.2024.9.30.0.32.59
Expand Down Expand Up @@ -113,7 +113,7 @@ matplotlib==3.9.2
mdurl==0.1.2
mlflow==2.16.2
mlflow-skinny==2.16.2
monai-weekly==1.4.dev2439
monai==1.3.2
mpmath==1.3.0
msgpack==1.1.0
multidict==6.1.0
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4 changes: 2 additions & 2 deletions requirements/linux/docs-requirements.txt
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Expand Up @@ -13,7 +13,7 @@ aniso8601==9.0.1
anndata==0.10.9
annotated-types==0.7.0
antlr4-python3-runtime==4.9.3
array-api-compat==1.8
array-api-compat==1.9
asciitree==0.3.3
astropy==6.0.1
astropy-iers-data==0.2024.9.30.0.32.59
Expand Down Expand Up @@ -111,7 +111,7 @@ mdurl==0.1.2
mistune==0.8.4
mlflow==2.16.2
mlflow-skinny==2.16.2
monai-weekly==1.4.dev2439
monai==1.3.2
mpmath==1.3.0
msgpack==1.1.0
multidict==6.1.0
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4 changes: 2 additions & 2 deletions requirements/linux/equiv-requirements.txt
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Expand Up @@ -12,7 +12,7 @@ aniso8601==9.0.1
anndata==0.10.9
annotated-types==0.7.0
antlr4-python3-runtime==4.9.3
array-api-compat==1.8
array-api-compat==1.9
asciitree==0.3.3
astropy==6.0.1
astropy-iers-data==0.2024.9.30.0.32.59
Expand Down Expand Up @@ -107,7 +107,7 @@ matplotlib==3.9.2
mdurl==0.1.2
mlflow==2.16.2
mlflow-skinny==2.16.2
monai-weekly==1.4.dev2439
monai==1.3.2
mpmath==1.3.0
msgpack==1.1.0
multidict==6.1.0
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369 changes: 354 additions & 15 deletions requirements/linux/pdm.lock
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8 changes: 4 additions & 4 deletions requirements/linux/requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ aniso8601==9.0.1
anndata==0.10.9
annotated-types==0.7.0
antlr4-python3-runtime==4.9.3
array-api-compat==1.8
array-api-compat==1.9
asciitree==0.3.3
astropy==6.0.1
astropy-iers-data==0.2024.9.30.0.32.59
Expand All @@ -23,8 +23,8 @@ bioio-czi==1.0.1
bioio-ome-tiff==1.0.0
bioio-tifffile==1.0.0
blinker==1.8.2
boto3==1.35.31
botocore==1.35.31
boto3==1.35.32
botocore==1.35.32
cachetools==5.5.0
certifi==2024.8.30
charset-normalizer==3.3.2
Expand Down Expand Up @@ -101,7 +101,7 @@ matplotlib==3.9.2
mdurl==0.1.2
mlflow==2.16.2
mlflow-skinny==2.16.2
monai-weekly==1.4.dev2439
monai==1.3.2
mpmath==1.3.0
msgpack==1.1.0
multidict==6.1.0
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4 changes: 2 additions & 2 deletions requirements/linux/spharm-requirements.txt
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Expand Up @@ -15,7 +15,7 @@ aniso8601==9.0.1
anndata==0.10.9
annotated-types==0.7.0
antlr4-python3-runtime==4.9.3
array-api-compat==1.8
array-api-compat==1.9
asciitree==0.3.3
astropy==6.0.1
astropy-iers-data==0.2024.9.30.0.32.59
Expand Down Expand Up @@ -106,7 +106,7 @@ matplotlib==3.9.2
mdurl==0.1.2
mlflow==2.16.2
mlflow-skinny==2.16.2
monai-weekly==1.4.dev2439
monai==1.3.2
mpmath==1.3.0
msgpack==1.1.0
multidict==6.1.0
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6 changes: 3 additions & 3 deletions requirements/linux/test-requirements.txt
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Expand Up @@ -12,7 +12,7 @@ aniso8601==9.0.1
anndata==0.10.9
annotated-types==0.7.0
antlr4-python3-runtime==4.9.3
array-api-compat==1.8
array-api-compat==1.9
asciitree==0.3.3
astropy==6.0.1
astropy-iers-data==0.2024.9.30.0.32.59
Expand Down Expand Up @@ -106,7 +106,7 @@ matplotlib==3.9.2
mdurl==0.1.2
mlflow==2.16.2
mlflow-skinny==2.16.2
monai-weekly==1.4.dev2439
monai==1.3.2
mpmath==1.3.0
msgpack==1.1.0
multidict==6.1.0
Expand Down Expand Up @@ -191,7 +191,7 @@ termcolor==2.4.0
threadpoolctl==3.5.0
tifffile==2023.2.28
timm==1.0.9
tomli==2.0.1; python_version < "3.11"
tomli==2.0.2; python_version < "3.11"
toolz==0.12.1
torch==2.0.1
torchmetrics==1.4.2
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4 changes: 2 additions & 2 deletions requirements/linux/torchserve-requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ aniso8601==9.0.1
anndata==0.10.9
annotated-types==0.7.0
antlr4-python3-runtime==4.9.3
array-api-compat==1.8
array-api-compat==1.9
asciitree==0.3.3
astropy==6.0.1
astropy-iers-data==0.2024.9.30.0.32.59
Expand Down Expand Up @@ -104,7 +104,7 @@ matplotlib==3.9.2
mdurl==0.1.2
mlflow==2.16.2
mlflow-skinny==2.16.2
monai-weekly==1.4.dev2439
monai==1.3.2
mpmath==1.3.0
msgpack==1.1.0
multidict==6.1.0
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4 changes: 2 additions & 2 deletions requirements/macos/all-requirements.txt
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Expand Up @@ -15,7 +15,7 @@ aniso8601==9.0.1
anndata==0.10.9
annotated-types==0.7.0
antlr4-python3-runtime==4.9.3
array-api-compat==1.8
array-api-compat==1.9
asciitree==0.3.3
astropy==6.0.1
astropy-iers-data==0.2024.9.30.0.32.59
Expand Down Expand Up @@ -113,7 +113,7 @@ matplotlib==3.9.2
mdurl==0.1.2
mlflow==2.16.2
mlflow-skinny==2.16.2
monai-weekly==1.4.dev2439
monai==1.3.2
mpmath==1.3.0
msgpack==1.1.0
multidict==6.1.0
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4 changes: 2 additions & 2 deletions requirements/macos/docs-requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ aniso8601==9.0.1
anndata==0.10.9
annotated-types==0.7.0
antlr4-python3-runtime==4.9.3
array-api-compat==1.8
array-api-compat==1.9
asciitree==0.3.3
astropy==6.0.1
astropy-iers-data==0.2024.9.30.0.32.59
Expand Down Expand Up @@ -111,7 +111,7 @@ mdurl==0.1.2
mistune==0.8.4
mlflow==2.16.2
mlflow-skinny==2.16.2
monai-weekly==1.4.dev2439
monai==1.3.2
mpmath==1.3.0
msgpack==1.1.0
multidict==6.1.0
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4 changes: 2 additions & 2 deletions requirements/macos/equiv-requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ aniso8601==9.0.1
anndata==0.10.9
annotated-types==0.7.0
antlr4-python3-runtime==4.9.3
array-api-compat==1.8
array-api-compat==1.9
asciitree==0.3.3
astropy==6.0.1
astropy-iers-data==0.2024.9.30.0.32.59
Expand Down Expand Up @@ -107,7 +107,7 @@ matplotlib==3.9.2
mdurl==0.1.2
mlflow==2.16.2
mlflow-skinny==2.16.2
monai-weekly==1.4.dev2439
monai==1.3.2
mpmath==1.3.0
msgpack==1.1.0
multidict==6.1.0
Expand Down
369 changes: 354 additions & 15 deletions requirements/macos/pdm.lock
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8 changes: 4 additions & 4 deletions requirements/macos/requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ aniso8601==9.0.1
anndata==0.10.9
annotated-types==0.7.0
antlr4-python3-runtime==4.9.3
array-api-compat==1.8
array-api-compat==1.9
asciitree==0.3.3
astropy==6.0.1
astropy-iers-data==0.2024.9.30.0.32.59
Expand All @@ -23,8 +23,8 @@ bioio-czi==1.0.1
bioio-ome-tiff==1.0.0
bioio-tifffile==1.0.0
blinker==1.8.2
boto3==1.35.31
botocore==1.35.31
boto3==1.35.32
botocore==1.35.32
cachetools==5.5.0
certifi==2024.8.30
charset-normalizer==3.3.2
Expand Down Expand Up @@ -101,7 +101,7 @@ matplotlib==3.9.2
mdurl==0.1.2
mlflow==2.16.2
mlflow-skinny==2.16.2
monai-weekly==1.4.dev2439
monai==1.3.2
mpmath==1.3.0
msgpack==1.1.0
multidict==6.1.0
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4 changes: 2 additions & 2 deletions requirements/macos/spharm-requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ aniso8601==9.0.1
anndata==0.10.9
annotated-types==0.7.0
antlr4-python3-runtime==4.9.3
array-api-compat==1.8
array-api-compat==1.9
asciitree==0.3.3
astropy==6.0.1
astropy-iers-data==0.2024.9.30.0.32.59
Expand Down Expand Up @@ -106,7 +106,7 @@ matplotlib==3.9.2
mdurl==0.1.2
mlflow==2.16.2
mlflow-skinny==2.16.2
monai-weekly==1.4.dev2439
monai==1.3.2
mpmath==1.3.0
msgpack==1.1.0
multidict==6.1.0
Expand Down
6 changes: 3 additions & 3 deletions requirements/macos/test-requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ aniso8601==9.0.1
anndata==0.10.9
annotated-types==0.7.0
antlr4-python3-runtime==4.9.3
array-api-compat==1.8
array-api-compat==1.9
asciitree==0.3.3
astropy==6.0.1
astropy-iers-data==0.2024.9.30.0.32.59
Expand Down Expand Up @@ -106,7 +106,7 @@ matplotlib==3.9.2
mdurl==0.1.2
mlflow==2.16.2
mlflow-skinny==2.16.2
monai-weekly==1.4.dev2439
monai==1.3.2
mpmath==1.3.0
msgpack==1.1.0
multidict==6.1.0
Expand Down Expand Up @@ -191,7 +191,7 @@ termcolor==2.4.0
threadpoolctl==3.5.0
tifffile==2023.2.28
timm==1.0.9
tomli==2.0.1; python_version < "3.11"
tomli==2.0.2; python_version < "3.11"
toolz==0.12.1
torch==2.0.1
torchmetrics==1.4.2
Expand Down
4 changes: 2 additions & 2 deletions requirements/macos/torchserve-requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ aniso8601==9.0.1
anndata==0.10.9
annotated-types==0.7.0
antlr4-python3-runtime==4.9.3
array-api-compat==1.8
array-api-compat==1.9
asciitree==0.3.3
astropy==6.0.1
astropy-iers-data==0.2024.9.30.0.32.59
Expand Down Expand Up @@ -104,7 +104,7 @@ matplotlib==3.9.2
mdurl==0.1.2
mlflow==2.16.2
mlflow-skinny==2.16.2
monai-weekly==1.4.dev2439
monai==1.3.2
mpmath==1.3.0
msgpack==1.1.0
multidict==6.1.0
Expand Down
4 changes: 2 additions & 2 deletions requirements/windows/all-requirements.txt
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Expand Up @@ -15,7 +15,7 @@ aniso8601==9.0.1
anndata==0.10.9
annotated-types==0.7.0
antlr4-python3-runtime==4.9.3
array-api-compat==1.8
array-api-compat==1.9
asciitree==0.3.3
astropy==6.0.1
astropy-iers-data==0.2024.9.30.0.32.59
Expand Down Expand Up @@ -113,7 +113,7 @@ matplotlib==3.9.2
mdurl==0.1.2
mlflow==2.16.2
mlflow-skinny==2.16.2
monai-weekly==1.4.dev2439
monai==1.3.2
mpmath==1.3.0
msgpack==1.1.0
multidict==6.1.0
Expand Down
4 changes: 2 additions & 2 deletions requirements/windows/docs-requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ aniso8601==9.0.1
anndata==0.10.9
annotated-types==0.7.0
antlr4-python3-runtime==4.9.3
array-api-compat==1.8
array-api-compat==1.9
asciitree==0.3.3
astropy==6.0.1
astropy-iers-data==0.2024.9.30.0.32.59
Expand Down Expand Up @@ -111,7 +111,7 @@ mdurl==0.1.2
mistune==0.8.4
mlflow==2.16.2
mlflow-skinny==2.16.2
monai-weekly==1.4.dev2439
monai==1.3.2
mpmath==1.3.0
msgpack==1.1.0
multidict==6.1.0
Expand Down
4 changes: 2 additions & 2 deletions requirements/windows/equiv-requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ aniso8601==9.0.1
anndata==0.10.9
annotated-types==0.7.0
antlr4-python3-runtime==4.9.3
array-api-compat==1.8
array-api-compat==1.9
asciitree==0.3.3
astropy==6.0.1
astropy-iers-data==0.2024.9.30.0.32.59
Expand Down Expand Up @@ -107,7 +107,7 @@ matplotlib==3.9.2
mdurl==0.1.2
mlflow==2.16.2
mlflow-skinny==2.16.2
monai-weekly==1.4.dev2439
monai==1.3.2
mpmath==1.3.0
msgpack==1.1.0
multidict==6.1.0
Expand Down
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