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Merge pull request #423 from AllenCellModeling/admin/requirements-upd…
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…ate_2024-08-30_00-51

admin/requirements-update_2024-08-30_00-51
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pgarrison authored Aug 30, 2024
2 parents 558e887 + 61d58d2 commit bbc7475
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304 changes: 158 additions & 146 deletions requirements/linux/all-requirements.txt
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# This file is @generated by PDM.
# Please do not edit it manually.

aicscytoparam==0.1.10
aicsimageio==4.11.0
aicscytoparam==0.1.12
aicsimageio==4.14.0
aicspylibczi==3.2.0
aicsshparam==0.1.7
aiobotocore==2.4.2
aiohttp==3.9.3
aiohappyeyeballs==2.4.0
aiohttp==3.10.5
aioitertools==0.11.0
aiosignal==1.3.1
alembic==1.13.1
alembic==1.13.2
aniso8601==9.0.1
anndata==0.9.2
annotated-types==0.6.0
anndata==0.10.9
annotated-types==0.7.0
antlr4-python3-runtime==4.9.3
anyio==4.3.0
arrow==1.3.0
array-api-compat==1.8
asciitree==0.3.3
astropy==5.2.2
async-timeout==4.0.3
attrs==23.2.0
autograd==1.6.2
astropy==6.0.1
astropy-iers-data==0.2024.8.27.10.28.29
async-timeout==4.0.3; python_version < "3.11"
attrs==24.2.0
autograd==1.7.0
autopage==0.5.2
backoff==2.2.1
beautifulsoup4==4.12.3
bfio==2.3.0
blessed==1.20.0
blinker==1.7.0
bioio==1.1.0
bioio-base==1.0.4
bioio-czi==1.0.1
bioio-ome-tiff==1.0.0
bioio-tifffile==1.0.0
blinker==1.8.2
boto3==1.24.4
botocore==1.27.59
certifi==2024.2.2
cachetools==5.5.0
certifi==2024.7.4
charset-normalizer==3.3.2
click==8.1.7
cliff==4.6.0
cliff==4.7.0
cloudpickle==3.0.0
cmaes==0.10.0
cmake==3.28.4
cmaes==0.11.1
cmake==3.30.2; platform_system == "Linux" and platform_machine == "x86_64"
cmd2==2.4.3
colorama==0.4.6
colorama==0.4.6; sys_platform == "win32" or platform_system == "Windows"
colorlog==6.8.2
contourpy==1.1.1
croniter==1.4.1
contourpy==1.3.0
cycler==0.12.1
dask==2023.5.0
dateutils==0.6.12
deepdiff==6.7.1
Deprecated==1.2.14
distributed==2023.5.0
docker==7.0.0
dask==2024.8.0
dask[array,distributed]==2024.8.0
dask[array]==2024.8.0
databricks-sdk==0.31.1
deprecated==1.2.14
distributed==2024.8.0
docker==7.1.0
e3nn==0.5.1
edt==2.4.0
einops==0.7.0
edt==2.4.1
einops==0.8.0
elementpath==4.4.0
entrypoints==0.4
escnn==1.0.11
exceptiongroup==1.2.0
fastapi==0.110.0
exceptiongroup==1.2.2; python_version < "3.11"
fasteners==0.19
filelock==3.13.1
filelock==3.15.4
fire==0.6.0
Flask==3.0.2
fonttools==4.50.0
flask==3.0.3
fonttools==4.53.1
frozenlist==1.4.1
fsspec==2023.3.0
future==1.0.0
fsspec[http]==2023.3.0
fsspec[s3]==2023.3.0
geomloss==0.2.6
gitdb==4.0.11
gitpython==3.1.42
gitpython==3.1.43
google-auth==2.34.0
gorilla==0.4.0
graphene==3.3
graphql-core==3.2.3
graphql-relay==3.2.0
greenlet==3.0.3
gunicorn==21.2.0
h11==0.14.0
h5py==3.10.0
greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13"
gunicorn==22.0.0; platform_system != "Windows"
h5py==3.11.0
huggingface-hub==0.17.3
humanize==4.9.0
humanize==4.10.0
hydra-colorlog==1.2.0
hydra-core==1.3.2
hydra-optuna-sweeper==1.2.0
idna==3.6
imagecodecs==2023.3.16
imageio==2.34.0
importlib-metadata==7.1.0
inquirer==3.1.4
itsdangerous==2.1.2
Jinja2==3.1.3
idna==3.8
imagecodecs==2024.6.1
imageio==2.27.0
imageio-ffmpeg==0.5.1
imageio[ffmpeg]==2.27.0
importlib-metadata==7.2.1
importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten"
itkwasm==1.0b178
itkwasm-downsample==1.4.0
itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten"
itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten"
itsdangerous==2.2.0
jinja2==3.1.4
jmespath==1.0.1
joblib==1.3.2
joblib==1.4.2
kiwisolver==1.4.5
lazy-loader==0.3
lazy-loader==0.4
lie-learn==0.0.1.post1
lightning==2.0.9.post0
lightning-cloud==0.5.65
lightning-utilities==0.11.0
lit==18.1.2
lightning==2.3.3
lightning-utilities==0.11.6
lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64"
locket==1.0.0
lxml==4.9.4
Mako==1.3.2
markdown==3.6
mako==1.3.5
markdown==3.7
markdown-it-py==3.0.0
MarkupSafe==2.1.5
matplotlib==3.7.5
markupsafe==2.1.5
matplotlib==3.9.2
mdurl==0.1.2
mlflow==2.11.3
monai-weekly==1.4.dev2411
mlflow==2.15.1
mlflow-skinny==2.15.1
monai-weekly==1.4.dev2434
mpmath==1.3.0
msgpack==1.0.8
multidict==6.0.5
natsort==8.4.0
networkx==3.1
networkx==3.2.1
ngff-zarr==0.8.7
nibabel==5.2.1
Ninja==1.11.1.1
ninja==1.11.1.1
numcodecs==0.12.1
numpy==1.24.4
nvidia-cublas-cu11==11.10.3.66
nvidia-cuda-cupti-cu11==11.7.101
nvidia-cuda-nvrtc-cu11==11.7.99
nvidia-cuda-runtime-cu11==11.7.99
nvidia-cudnn-cu11==8.5.0.96
nvidia-cufft-cu11==10.9.0.58
nvidia-curand-cu11==10.2.10.91
nvidia-cusolver-cu11==11.4.0.1
nvidia-cusparse-cu11==11.7.4.91
nvidia-nccl-cu11==2.14.3
nvidia-nvtx-cu11==11.7.91
ome-types==0.5.1
ome-zarr==0.8.3
numpy==1.25.2
nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64"
nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64"
nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64"
nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64"
nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64"
nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64"
nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64"
nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64"
nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64"
nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64"
nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64"
ome-types==0.5.1.post1
ome-types[lxml]==0.5.1.post1
ome-zarr==0.9.0
omegaconf==2.3.0
online-stats==2023.6
opentelemetry-api==1.27.0
opentelemetry-sdk==1.27.0
opentelemetry-semantic-conventions==0.48b0
opt-einsum==3.3.0
opt-einsum-fx==0.1.4
optuna==2.10.1
ordered-set==4.1.0
ostat==0.2
packaging==23.2
pandas==1.5.3
partd==1.4.1
pbr==6.0.0
pillow==10.2.0
platformdirs==4.2.0
packaging==24.1
pandas==2.2.2
partd==1.4.2
pbr==6.1.0
pillow==10.4.0
platformdirs==4.2.2
point-cloud-utils==0.30.4
pooch==1.8.1
PrettyTable==3.10.0
protobuf==3.20.1
psutil==5.9.8
pooch==1.8.2
positional-encodings==6.0.3
prettytable==3.11.0
protobuf==5.28.0
psutil==6.0.0
py3nj==0.1.2
pyarrow==10.0.1
pydantic==2.1.1
pyarrow==15.0.2
pyasn1==0.6.0
pyasn1-modules==0.4.0
pydantic==2.8.2
pydantic-compat==0.1.2
pydantic-core==2.4.0
pyerfa==2.0.0.3
pygments==2.17.2
pyjwt==2.8.0
pydantic-core==2.20.1
pyerfa==2.0.1.4
pygments==2.18.0
pymanopt==2.2.0
pyntcloud==0.3.1
pyparsing==3.1.2
pyperclip==1.8.2
pyparsing==3.1.4
pyperclip==1.9.0
pyreadline3==3.4.1; sys_platform == "win32"
pyrootutils==1.0.4
pyshtools==4.10.3
python-dateutil==2.9.0.post0
python-dotenv==1.0.1
python-editor==1.0.4
python-multipart==0.0.9
pytorch-lightning==2.2.1
pytorch-lightning==2.3.3
pytz==2024.1
PyWavelets==1.4.1
PyYAML==6.0.1
pywin32==306; sys_platform == "win32"
pyyaml==6.0.2
querystring-parser==1.2.4
readchar==4.0.6
requests==2.31.0
requests==2.32.3
resource-backed-dask-array==0.1.0
rich==13.7.1
rich==13.8.0
rich-argparse==1.5.2
rsa==4.9
s3fs==2023.3.0
s3transfer==0.6.2
safetensors==0.4.2
scikit-image==0.21.0
scikit-learn==1.3.2
safetensors==0.4.4
scikit-image==0.22.0
scikit-learn==1.5.1
scipy==1.9.3
setuptools==69.2.0
semver==3.0.2
setuptools==74.0.0
shellingham==1.5.4
SimpleITK==2.3.1
simpleitk==2.4.0
six==1.16.0
smmap==5.0.1
sniffio==1.3.1
sortedcontainers==2.4.0
soupsieve==2.5
sqlalchemy==2.0.28
sqlparse==0.4.4
starlette==0.36.3
starsessions==1.3.0
stevedore==5.2.0
sympy==1.12
sqlalchemy==2.0.32
sqlparse==0.5.1
stevedore==5.3.0
sympy==1.13.2
tblib==3.0.0
termcolor==2.4.0
threadpoolctl==3.4.0
tifffile==2023.7.10
timm==0.9.16
threadpoolctl==3.5.0
tifffile==2023.2.28
timm==1.0.9
toolz==0.12.1
torch==2.0.1
torch-geometric==2.5.2
torchio==0.19.6
torchmetrics==1.3.2
torchserve==0.10.0
torch-geometric==2.5.3
torchio==0.19.9
torchmetrics==1.4.1
torchserve==0.11.1
torchvision==0.15.2
tornado==6.4
tqdm==4.66.2
traitlets==5.14.2
triton==2.0.0
typer==0.9.0
types-python-dateutil==2.9.0.20240316
typing-extensions==4.10.0
universal-pathlib==0.2.2
urllib3==1.26.18
uvicorn==0.29.0
vtk==9.3.0
tornado==6.4.1
tqdm==4.66.5
triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64"
typer==0.12.5
typer[all]==0.12.5
typing-extensions==4.12.2
tzdata==2024.1
universal-pathlib==0.2.3
urllib3==1.26.20
vtk==9.3.1
waitress==3.0.0; platform_system == "Windows"
wasmtime==24.0.0; sys_platform != "emscripten"
wcwidth==0.2.13
websocket-client==1.7.0
websockets==12.0
Werkzeug==3.0.1
wheel==0.43.0
werkzeug==3.0.4
wheel==0.44.0
wrapt==1.16.0
xarray==2023.1.0
xmlschema==3.1.0
xarray==2024.7.0
xmlschema==3.3.2
xsdata==24.3.1
yarl==1.9.4
zarr==2.16.1
zarr==2.15.0
zict==3.0.0
zipp==3.18.1
zipp==3.20.1
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