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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 343 149

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 22 14

Repositories

Showing 10 of 392 repositories
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 23 7 287 10 Updated Oct 27, 2024
  • np_codeocean Public

    Tools for uploading and interacting with Mindscope Neuropixels experiments on Code Ocean

    AllenInstitute/np_codeocean’s past year of commit activity
    Python 0 2 1 0 Updated Oct 26, 2024
  • npc_sessions Public

    Tools for accessing and packaging data from behavior and epyhys sessions from the Mindscope Neuropixels team, in the cloud.

    AllenInstitute/npc_sessions’s past year of commit activity
    Python 1 1 51 (3 issues need help) 0 Updated Oct 26, 2024
  • np_session Public

    Tools for accessing data, metadata, and jobs related to ecephys and behavior sessions for the Mindscope Neuropixels team.

    AllenInstitute/np_session’s past year of commit activity
    Python 1 1 1 0 Updated Oct 25, 2024
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 3 BSD-3-Clause 1 46 6 Updated Oct 25, 2024
  • scrattch.bigcat Public

    iterative clustering pipeline of big single cell datasets.

    AllenInstitute/scrattch.bigcat’s past year of commit activity
    R 25 10 4 2 Updated Oct 25, 2024
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims’s past year of commit activity
    Python 0 MIT 0 6 1 Updated Oct 25, 2024
  • abc_atlas_access Public

    Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

    AllenInstitute/abc_atlas_access’s past year of commit activity
    Jupyter Notebook 50 21 14 5 Updated Oct 25, 2024
  • jem Public

    Repository containing JEM (JSON Electrophysiology Metadata), a web-form for logging metadata during slice electrophysiology experiments.

    AllenInstitute/jem’s past year of commit activity
    HTML 3 3 0 0 Updated Oct 25, 2024
  • microns_tutorial Public

    MICrONS databook and analysis tutorials

    AllenInstitute/microns_tutorial’s past year of commit activity
    Jupyter Notebook 1 2 0 0 Updated Oct 25, 2024

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