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scaffolding.py
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from dataclasses import dataclass
from pathlib import Path
from typing import Optional, Union
from aibs_informatics_aws_utils.batch import build_retry_strategy
from aibs_informatics_aws_utils.constants.efs import (
EFS_SCRATCH_ACCESS_POINT_NAME,
EFS_SCRATCH_PATH,
EFS_SHARED_ACCESS_POINT_NAME,
EFS_SHARED_PATH,
EFS_TMP_ACCESS_POINT_NAME,
EFS_TMP_PATH,
)
from aibs_informatics_aws_utils.efs import MountPointConfiguration
from aibs_informatics_core.env import EnvBase
from aibs_informatics_core.models.data_sync import DataSyncRequest
from aibs_informatics_aws_lambda.common.handler import LambdaHandler
from aibs_informatics_aws_lambda.handlers.demand.context_manager import (
BatchEFSConfiguration,
DemandExecutionContextManager,
)
from aibs_informatics_aws_lambda.handlers.demand.model import (
CreateDefinitionAndPrepareArgsRequest,
DemandExecutionCleanupConfigs,
DemandExecutionSetupConfigs,
PrepareDemandScaffoldingRequest,
PrepareDemandScaffoldingResponse,
)
@dataclass
class PrepareDemandScaffoldingHandler(
LambdaHandler[PrepareDemandScaffoldingRequest, PrepareDemandScaffoldingResponse]
):
def handle(self, request: PrepareDemandScaffoldingRequest) -> PrepareDemandScaffoldingResponse:
scratch_vol_configuration = construct_batch_efs_configuration(
env_base=self.env_base,
file_system=request.file_system_configurations.scratch.file_system,
access_point=request.file_system_configurations.scratch.access_point
if request.file_system_configurations.scratch.access_point
else EFS_SCRATCH_ACCESS_POINT_NAME,
container_path=request.file_system_configurations.scratch.container_path
if request.file_system_configurations.scratch.container_path
else f"/opt/efs{EFS_SCRATCH_PATH}",
read_only=False,
)
shared_vol_configuration = construct_batch_efs_configuration(
env_base=self.env_base,
file_system=request.file_system_configurations.shared.file_system,
access_point=request.file_system_configurations.shared.access_point
if request.file_system_configurations.shared.access_point
else EFS_SHARED_ACCESS_POINT_NAME,
container_path=request.file_system_configurations.shared.container_path
if request.file_system_configurations.shared.container_path
else f"/opt/efs{EFS_SHARED_PATH}",
read_only=True,
)
if request.file_system_configurations.tmp is not None:
tmp_vol_configuration = construct_batch_efs_configuration(
env_base=self.env_base,
file_system=request.file_system_configurations.tmp.file_system,
access_point=request.file_system_configurations.tmp.access_point
if request.file_system_configurations.tmp.access_point
else EFS_TMP_ACCESS_POINT_NAME,
container_path=request.file_system_configurations.tmp.container_path
if request.file_system_configurations.tmp.container_path
else f"/opt/efs{EFS_TMP_PATH}",
read_only=False,
)
else:
tmp_vol_configuration = None
context_manager = DemandExecutionContextManager(
demand_execution=request.demand_execution,
scratch_vol_configuration=scratch_vol_configuration,
shared_vol_configuration=shared_vol_configuration,
tmp_vol_configuration=tmp_vol_configuration,
configuration=request.context_manager_configuration,
env_base=self.env_base,
)
batch_job_builder = context_manager.batch_job_builder
self.setup_file_system(context_manager)
setup_configs = DemandExecutionSetupConfigs(
data_sync_requests=[
sync_request.from_dict(sync_request.to_dict())
for sync_request in context_manager.pre_execution_data_sync_requests
],
batch_create_request=CreateDefinitionAndPrepareArgsRequest(
image=batch_job_builder.image,
job_definition_name=batch_job_builder.job_definition_name,
job_name=batch_job_builder.job_name,
job_queue_name=context_manager.batch_job_queue_name,
job_definition_tags=batch_job_builder.job_definition_tags,
command=batch_job_builder.command,
environment=batch_job_builder.environment,
resource_requirements=batch_job_builder.resource_requirements,
mount_points=batch_job_builder.mount_points,
volumes=batch_job_builder.volumes,
retry_strategy=build_retry_strategy(num_retries=5),
privileged=batch_job_builder.privileged,
),
)
cleanup_configs = DemandExecutionCleanupConfigs(
data_sync_requests=[
sync_request.from_dict(sync_request.to_dict())
for sync_request in context_manager.post_execution_data_sync_requests
]
)
return PrepareDemandScaffoldingResponse(
demand_execution=context_manager.demand_execution,
setup_configs=setup_configs,
cleanup_configs=cleanup_configs,
)
def setup_file_system(self, context_manager: DemandExecutionContextManager):
"""Sets up working directory for file system
Args:
context_manager (DemandExecutionContextManager): context manager
"""
working_path = context_manager.container_working_path
# working_path.mkdir(parents=True, exist_ok=True)
def construct_batch_efs_configuration(
env_base: EnvBase,
container_path: Union[Path, str],
file_system: Optional[str],
access_point: Optional[str],
read_only: bool = False,
) -> BatchEFSConfiguration:
mount_point_config = MountPointConfiguration.build(
mount_point=container_path,
access_point=access_point,
file_system=file_system,
access_point_tags={"env_base": env_base},
file_system_tags={"env_base": env_base},
)
return BatchEFSConfiguration(mount_point_config=mount_point_config, read_only=read_only)
handler = PrepareDemandScaffoldingHandler.get_handler()