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@vgteam @graph-genome @pangenome @waveygang

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  1. pangenome/odgi pangenome/odgi Public

    Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

    C++ 194 40

  2. pangenome/pggb pangenome/pggb Public

    the pangenome graph builder

    Shell 394 44

  3. waveygang/wfmash waveygang/wfmash Public

    base-accurate DNA sequence alignments using WFA and mashmap3

    C++ 177 19

  4. pangenome/smoothxg pangenome/smoothxg Public

    linearize and simplify variation graphs using blocked partial order alignment

    C++ 56 7

  5. paf2chain paf2chain Public

    convert PAF format to CHAIN format

    Rust 26 2

  6. pangenome/impg pangenome/impg Public

    implicit pangenome graph

    Rust 43 5